BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138131.4 + phase: 0 /pseudo
(1189 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 434 e-119
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 411 e-113
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 409 e-112
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 397 e-108
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 392 e-107
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 385 e-105
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 385 e-105
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 385 e-105
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 382 e-104
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 380 e-103
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 379 e-103
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 379 e-103
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 374 e-101
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 374 e-101
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 374 e-101
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 372 e-101
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 372 e-101
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 372 e-101
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 372 e-101
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 371 e-101
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 434 bits (1115), Expect = e-119
Identities = 209/478 (43%), Positives = 304/478 (62%), Gaps = 2/478 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK +L IS QSAFVPGR I DN++ A E+ H+M+ K G VG A KLD+SKAYDR
Sbjct: 725 RLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDR 784
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L +M K+GF W+ IM CV TV Y + VNG ++ P RGLRQGDPLSPYL
Sbjct: 785 VEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYL 844
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++CAEG SAL+ K E G ++G+++C AP +SHLLFADD + RAN +AQ+++ IL
Sbjct: 845 FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 904
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
+YE+ SGQ +N KS S N S + + L ++ KYLGLP +GRS+
Sbjct: 905 QIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTK 964
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F+++K+R+W++I W K LS+AG+E+LIK V Q IPT+ M F L LCD+I KM+
Sbjct: 965 IFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIA 1024
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+WW + + K +HW+SW+KL++ K GG+ F+++ FNLAML KQGWR++ D+L +
Sbjct: 1025 KYWWSNQEKDNK-MHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCS 1083
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R+ +A+YFP + F + N S+ WRSI K +L+ G W++GDG+ I++W + W+
Sbjct: 1084 RVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPR 1143
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPLYPSVRE 831
+ P+ L +V + I P +W+ LL+ F E+ V I S P++ + +
Sbjct: 1144 GWSRKPMTPRGANLVT-KVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEMED 1200
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 411 bits (1056), Expect = e-113
Identities = 210/481 (43%), Positives = 292/481 (60%), Gaps = 1/481 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK VL ISE QSAFV GR I DN++ A E+ H ++ +A+K D+SKAYD+
Sbjct: 308 RLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQ 367
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EWN++ ++ KMGF E+WI WIM C+ TV Y VL+NG G IIP RGLRQGDPLSPYL
Sbjct: 368 VEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYL 427
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C E L A IRKAE + I G+KV +P +SHLLFADD F +AN + + IL
Sbjct: 428 FILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEIL 487
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
YE SGQ +N KS V + +I ILG+ + G G YLGLP +G SK
Sbjct: 488 KQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTK 547
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F+F++DR+ +IN WS+K LSK G+EV+IK V ++P Y MS F LP ++ ++ +
Sbjct: 548 VFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVA 607
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW +G + +G+HWM+WDKL K DGG+ F+N+ FN A+L KQ WR++T D+L A
Sbjct: 608 KFWWSSNG-DSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFA 666
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
+++K RYF + N +S ++PS+ WRS+ ++ ++ G ++G G SISVWN+ W+
Sbjct: 667 KVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPA 726
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPLYPSVREDR 833
+ +L+V I WNI LL +F + V I + P+ ED
Sbjct: 727 QFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDT 786
Query: 834 L 834
L
Sbjct: 787 L 787
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 409 bits (1051), Expect = e-112
Identities = 207/481 (43%), Positives = 294/481 (61%), Gaps = 1/481 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK +L ISE SAFV GR I DN++ A E+ H ++ +A+K D+SKAYDR
Sbjct: 374 RLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNPSCKGKFMAIKTDMSKAYDR 433
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EWN++ +++ KMGF E+WI WIM C+ TV Y VL+NG G I+P RGLRQGDPLSPYL
Sbjct: 434 VEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYL 493
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C E L A IRKAE I G+KV +P +SHLLFA+D F +AN + + IL
Sbjct: 494 FILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFCKANKEQCGVILGIL 553
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
YE SGQ +N KS V I + LG+ ++ G G YLGLP +G SK
Sbjct: 554 KQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGSYLGLPESLGGSKTR 613
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F+F++DR+ +IN WS+K LSK G+EV+IK V+ +PTY MS F LP ++ ++ +
Sbjct: 614 IFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSKLTSAVA 673
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW G + +G+HWM+W+KL K DGG+ F+++ FN A+L KQ WR++T D+L A
Sbjct: 674 KFWWSSDGES-RGMHWMAWNKLCSSKADGGLGFRSVNDFNSALLAKQLWRLITVPDSLFA 732
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
+++K RYF + N + ++PS+ WRSI ++ ++K G ++G G SISVW + W+
Sbjct: 733 KVFKGRYFRKSNPLDKLKSYSPSYGWRSIISARSLVKKGLINRVGSGASISVWEDPWIPA 792
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPLYPSVREDR 833
+ + + +L+V++ I WNI LN IF + V I + L S +ED
Sbjct: 793 QFPRPAISNGSVIDPSLKVNNLIDSRSNFWNIDFLNEIFVPEDVLLISAMHLGSSTKEDS 852
Query: 834 L 834
L
Sbjct: 853 L 853
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 397 bits (1020), Expect = e-108
Identities = 197/479 (41%), Positives = 289/479 (60%), Gaps = 17/479 (3%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L +SEFQSAFVPGR I D+ + A E +H ++ + N ALK+D+ KAYDR
Sbjct: 540 RLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPF-FALKIDMMKAYDR 598
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW YL + K+GFS+ WI +M CV +V Y V +NG +T P++P RG+RQGDP+SPYL
Sbjct: 599 VEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYL 658
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C EGLS L+ K E G++ G+K + P ISHLLFADD F +A+ Q ++N L
Sbjct: 659 FLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTL 718
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
Y ASGQ +NL KS F + A ++ + L V + YLG+P+ IG +
Sbjct: 719 RSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTN 778
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F F+ +R+WK++N W+ + LS+AG E ++K V Q+IP Y MS F +P+S+C++++ +
Sbjct: 779 FFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIA 838
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
WWG KK +HW SW LS K GGM F+ TFN AMLG+Q WR+LT D+L +
Sbjct: 839 DHWWGFEDGKKK-MHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCS 897
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYW--- 770
R+ K RYFP +F+E+ +PSF WRS+ + +L G RW +GDG +I ++++ W
Sbjct: 898 RVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPG 957
Query: 771 ----MRNDVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPL 825
+ ++ FP D + L N + + W+ L+ S+F I + I+ P+
Sbjct: 958 FRPQLVTTLSPFPTDATVSCLMN--------EDARCWDGDLIRSLFPVDIAKEILQIPI 1008
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 392 bits (1007), Expect = e-107
Identities = 202/487 (41%), Positives = 301/487 (61%), Gaps = 10/487 (2%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK +L ISE Q+AFV GR I DN++ A E++H + K + +A+K DISKAYDR
Sbjct: 524 RLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDR 583
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW +L + M +GF++ WI+ IM CV++V Y VL+NG G IIP RGLRQGDPLSPYL
Sbjct: 584 VEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYL 643
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F+IC E L +++ AE + I G+KV AP ISHLLFADD + + N ++ I+
Sbjct: 644 FVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRII 703
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
Y ASGQ VN KS + +++S + LG++ G G YLGLP SK A
Sbjct: 704 EEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVA 763
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
T +++KDR+ KK+ W S LS G+E+L+K V ++PTY MS F +P ++C +IE +M
Sbjct: 764 TLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMA 823
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW + +G+HW +W LS K GG+ FK + FN+A+LGKQ WR++T+ D+L+A
Sbjct: 824 EFWWKNK-KEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMA 882
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWM-- 771
+++K+RYF + + + LG PSF W+SI +++ ++K G R IG+G +I+VW + W+
Sbjct: 883 KVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGA 942
Query: 772 ---RNDVTIFPLDDVATTLANL--RVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPLY 826
+ + V+ AN V D ++P+ + WN L++ +F + E+I++ L
Sbjct: 943 KPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILA--LR 1000
Query: 827 PSVREDR 833
P +E R
Sbjct: 1001 PGGKETR 1007
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 385 bits (989), Expect = e-105
Identities = 193/474 (40%), Positives = 286/474 (59%), Gaps = 2/474 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L +S QSAFVP R I DN++ A E+IH ++ + + +A K D+SKAYDR
Sbjct: 502 RLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDR 561
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW +L +M +GF+ +WI WIM+CV +V Y VL+NG G IIP RG+RQGDPLSP L
Sbjct: 562 VEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPAL 621
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C E L ++ KAE G I G++ + ++HLLFADD L +A + +++ L
Sbjct: 622 FVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCL 681
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
S Y + SGQ +NL KS +NV I + G+ GTGKYLGLP + SK+
Sbjct: 682 SQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRD 741
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F FIK+++ ++ W +K LS+ G+EVL+K + ++P Y MS F LP +LC ++ +M
Sbjct: 742 LFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMM 801
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW +S K+ IHW+SW +L++ K GG FK+L FN A+L KQ WR+L + +L +
Sbjct: 802 DFWW-NSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFS 860
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R++++RYF +F + G PS+ WRSI + +L G R IG+G VW + W+ +
Sbjct: 861 RVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHD 920
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIV-STPLY 826
PL+ +L+VS I P ++WN+ +L +F + VE I+ PL+
Sbjct: 921 GSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLF 974
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 385 bits (989), Expect = e-105
Identities = 193/451 (42%), Positives = 284/451 (62%), Gaps = 3/451 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK LD +S+ Q+AF+PGR + DNVM A E++H +K + + + +A+K D+SKAYDR
Sbjct: 906 RLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDR 965
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EWN+L M GFSE WIKWIM V++V+Y VLVNG G I P RG+RQGDPLSPYL
Sbjct: 966 VEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYL 1025
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+CA+ L+ LI+ A GDI G+++ N P ++HL FADD F ++N+ Q ++++
Sbjct: 1026 FILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVF 1085
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VYE SGQ +N+ KS V + NILG+++ G GKYLGLP GR K+
Sbjct: 1086 DVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRD 1145
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
FN+I +RV K+ +SWS+K LS AG+E+++K V S+P Y MS F LPL++ EIE ++
Sbjct: 1146 MFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLM 1205
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW + K+ I W++W +L KK+GG+ F++L FN A+L KQ WR++ ++L A
Sbjct: 1206 NFWW-EKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFA 1264
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
RI KARYF + +++ S+ W S+ ++K GSR+ +GDG + S YW +
Sbjct: 1265 RIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTGSY--RYWNAH 1322
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWN 804
++ D + N +S + ++ WN
Sbjct: 1323 LISQLVSPDDHRFVMNHHLSRIVHQDKLVWN 1353
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 385 bits (989), Expect = e-105
Identities = 193/474 (40%), Positives = 286/474 (59%), Gaps = 2/474 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L +S QSAFVP R I DN++ A E+IH ++ + + +A K D+SKAYDR
Sbjct: 523 RLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDR 582
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW +L +M +GF+ +WI WIM+CV +V Y VL+NG G IIP RG+RQGDPLSP L
Sbjct: 583 VEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPAL 642
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C E L ++ KAE G I G++ + ++HLLFADD L +A + +++ L
Sbjct: 643 FVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCL 702
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
S Y + SGQ +NL KS +NV I + G+ GTGKYLGLP + SK+
Sbjct: 703 SQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRD 762
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F FIK+++ ++ W +K LS+ G+EVL+K + ++P Y MS F LP +LC ++ +M
Sbjct: 763 LFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMM 822
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW +S K+ IHW+SW +L++ K GG FK+L FN A+L KQ WR+L + +L +
Sbjct: 823 DFWW-NSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFS 881
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R++++RYF +F + G PS+ WRSI + +L G R IG+G VW + W+ +
Sbjct: 882 RVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHD 941
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIV-STPLY 826
PL+ +L+VS I P ++WN+ +L +F + VE I+ PL+
Sbjct: 942 GSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLF 995
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 382 bits (980), Expect = e-104
Identities = 185/410 (45%), Positives = 269/410 (65%), Gaps = 1/410 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK LD +S+ Q+AF+PGR + DNVM A E++H +K + + + +A+K D+SKAYDR
Sbjct: 886 RLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDR 945
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EWN+L M GFSE WIKWIM V++V+Y VLVNG G I P RG+RQGDPLSPYL
Sbjct: 946 VEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYL 1005
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+CA+ L+ LI+ A GDI G+++ N P ++HL FADD F ++N+ Q ++++
Sbjct: 1006 FILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVF 1065
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VYE SGQ +N+ KS V + NILG+++ G GKYLGLP GR K+
Sbjct: 1066 DVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRD 1125
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
FN+I +RV K+ +SWS+K LS AG+E+++K V S+P Y MS F LPL++ EIE ++
Sbjct: 1126 MFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLM 1185
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW + K+ I W++W +L KK+GG+ F++L FN A+L KQ WR++ ++L A
Sbjct: 1186 NFWW-EKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFA 1244
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSI 763
RI KARYF + +++ S+ W S+ ++K GSR+ +GDG ++
Sbjct: 1245 RIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 380 bits (976), Expect = e-103
Identities = 190/479 (39%), Positives = 285/479 (58%), Gaps = 2/479 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RL+ +L + ISE QSAFVPGR I DN + A E H + + + ALKLD+SKAYDR
Sbjct: 512 RLRPLLQEIISETQSAFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDR 571
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
++W +L + K+GF W KWIMSCV +V Y V +NGN+ P P RGLR+GDPL+PYL
Sbjct: 572 VDWGFLDGALQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYL 631
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F+ A+GLS ++++ I +KVC +AP +SHLLFADD LFF+A + +A +++ L
Sbjct: 632 FLFIADGLSNILQRRRDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEAL 691
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
+YE+ +GQ +N ++ S I +L V+ K LGLP+ GR K
Sbjct: 692 DLYERCTGQLINPKECSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAE 751
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F IK+R K++ WS + LS AG+E LIK V Q++PTY M +F +P C+E E+++
Sbjct: 752 QFQPIKERFEKRLTDWSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVR 811
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWWGH KK +HW++W+KL+ K GG+ F+++ FN A+L +Q WR++ D+L A
Sbjct: 812 NFWWGHEKGEKK-VHWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCA 870
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R+ KA+Y+P ++ S W+ I +LK G W+IGDG+ +W N+W+ +
Sbjct: 871 RVLKAKYYPNGTITDTAFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAH 930
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPLYPSVRED 832
+ L+ T + V + I+ + K+WN PL+ I E+ + I+ + ED
Sbjct: 931 GENLKILEK-KTWNRVIYVRELIVTDTKTWNEPLIRHIIREEDADEILKIRIPQREEED 988
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 379 bits (974), Expect = e-103
Identities = 186/410 (45%), Positives = 267/410 (64%), Gaps = 1/410 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L+ +S+ Q+AF+PGR I DNVM A EI+H +K++ + + +A+K D+SKAYDR
Sbjct: 145 RLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDR 204
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L M GF ++WI WIM+ V++V Y VL+NG+ G I P RG+RQGDPLSPYL
Sbjct: 205 VEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYL 264
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C + LS LI+ + GDI GV++ N AP I+HL FADD F +AN+ Q ++++
Sbjct: 265 FILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVF 324
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VYE SGQ +N+QKS V + + +L + G GKYLGLP GR KK
Sbjct: 325 DVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKE 384
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
FN+I DRV ++ SWS+K LS AG+E+L+K V ++P Y MS F LP + EIE ++
Sbjct: 385 MFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLM 444
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW SNK+GI W++W +L KK+GG+ F++L FN A+L KQ WRI+ ++L A
Sbjct: 445 NFWW-EKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFA 503
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSI 763
R+ KARYF + +++ S+ W S+ +L+ G+R+ IGDG +I
Sbjct: 504 RVMKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTI 553
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 379 bits (973), Expect = e-103
Identities = 194/482 (40%), Positives = 282/482 (58%), Gaps = 9/482 (1%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RL+ +LD +S QSAFV GR I DN + A E H M+ K N A KLD+SKAYDR
Sbjct: 1258 RLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDR 1317
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
++W +L M+K+GF+ +W+ WIM CV +V Y V NG + P RGLRQGDPL P+L
Sbjct: 1318 VDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFL 1377
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F+ A+GLS L+++ A+ + KVC AP ISHLLFADD LFF+A+ +A+ ++ +L
Sbjct: 1378 FLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVL 1437
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
S Y +GQ +N K +PA + I+ IL V+ +YLG P+ GR K
Sbjct: 1438 SSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKG 1497
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F ++ ++WK++ W LS G+EVLIK V+Q+IP Y M +F LP S+ D++ K+
Sbjct: 1498 RFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTK 1557
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW +K HW +WD L+ K GG+ F++ FN A+L +Q WR++T D+L A
Sbjct: 1558 NFWWDSMNGQRK-THWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCA 1616
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R+ KA+YFP + ++ G N S WRSI +LK G W++G+G SI +W + W+
Sbjct: 1617 RVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPR 1676
Query: 774 DVTIFPLDDVATTLANLR---VSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPLYPSVR 830
D + P+ T AN R VSD ++ SW++P ++ F E I++ +
Sbjct: 1677 DHSRRPI----TGKANCRLKWVSD-LITEDGSWDVPKIHQYFHNLDAEVILNICISSRSE 1731
Query: 831 ED 832
ED
Sbjct: 1732 ED 1733
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 374 bits (960), Expect = e-101
Identities = 179/363 (49%), Positives = 246/363 (67%), Gaps = 1/363 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLKVVL + IS QSAFVP R I NV+ A E+ H++ + KG G A+KLD+SKAYDR
Sbjct: 872 RLKVVLLEIISPSQSAFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDR 931
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++LR +M ++GF +QW+ +M CV +V Y + +NG + I P RGLRQGDPLSPYL
Sbjct: 932 VEWDFLRHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYL 991
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FIICAEGLSAL++KA+A G I G+KVC + P I+HL FADD + RA N AQ++R +L
Sbjct: 992 FIICAEGLSALLQKAQADGKIEGIKVCRDTPRINHLFFADDSLVLMRAGQNDAQELRRVL 1051
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
++YE ASGQ +N KS S N +D + + L + +YLGLP IG+S++
Sbjct: 1052 NIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSALCINQEAKNERYLGLPVSIGKSRRK 1111
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F +IK +VW +I W K LSKAG+E+L+K V Q+IPTY MS F L LCDEI M++
Sbjct: 1112 AFEYIKRKVWLRIQGWQEKLLSKAGKEILVKAVAQAIPTYAMSCFDLTKGLCDEINSMIS 1171
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+WW + K IHW+SW+K+++ KK GG F++L FN+AML +Q WR+L D+L
Sbjct: 1172 KWWWSQNDKENK-IHWLSWEKMTLPKKLGGPGFRDLHLFNMAMLARQAWRLLLNVDSLCG 1230
Query: 714 RIY 716
+++
Sbjct: 1231 QVF 1233
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 374 bits (959), Expect = e-101
Identities = 181/412 (43%), Positives = 266/412 (63%), Gaps = 1/412 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L+ +S+ Q+AF+PGR I DNVM A E++H +K++ + + +A+K D+SKAYDR
Sbjct: 906 RLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDR 965
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L M GF +WI WIM+ V++V Y VL+NG+ G I P RG+RQGDPLSPYL
Sbjct: 966 VEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYL 1025
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C + LS LI + GD+ GV++ N AP I+HL FADD F +AN+ Q ++++
Sbjct: 1026 FILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVF 1085
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VYE SGQ +N+QKS V + + IL + G GKYLGLP GR KK
Sbjct: 1086 DVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKE 1145
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F +I DRV K+ ++WS++ LS AG+E+++K V ++P Y MS F LP + EIE ++
Sbjct: 1146 MFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLM 1205
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW SN++GI W++W +L KK+GG+ F++L FN A+L KQ WR++ ++L A
Sbjct: 1206 NFWW-EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFA 1264
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISV 765
R+ KARYF + ++++ S+ W S+ +LK G+R IGDG +I +
Sbjct: 1265 RVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRI 1316
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 374 bits (959), Expect = e-101
Identities = 181/412 (43%), Positives = 266/412 (63%), Gaps = 1/412 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L+ +S+ Q+AF+PGR I DNVM A E++H +K++ + + +A+K D+SKAYDR
Sbjct: 680 RLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDR 739
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L M GF +WI WIM+ V++V Y VL+NG+ G I P RG+RQGDPLSPYL
Sbjct: 740 VEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYL 799
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C + LS LI + GD+ GV++ N AP I+HL FADD F +AN+ Q ++++
Sbjct: 800 FILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVF 859
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VYE SGQ +N+QKS V + + IL + G GKYLGLP GR KK
Sbjct: 860 DVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKE 919
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F +I DRV K+ ++WS++ LS AG+E+++K V ++P Y MS F LP + EIE ++
Sbjct: 920 MFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLM 979
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWW SN++GI W++W +L KK+GG+ F++L FN A+L KQ WR++ ++L A
Sbjct: 980 NFWW-EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFA 1038
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISV 765
R+ KARYF + ++++ S+ W S+ +LK G+R IGDG +I +
Sbjct: 1039 RVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRI 1090
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 372 bits (954), Expect = e-101
Identities = 185/451 (41%), Positives = 273/451 (60%), Gaps = 1/451 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
R++++L K ISE QSAFVPGR I DNV+ E++H ++ +A+K D+SKAYDR
Sbjct: 419 RMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDR 478
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW++L++V+ + GF WI W++ CV +V Y L+NG G ++P RGLRQGDPLSP L
Sbjct: 479 VEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCL 538
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
FI+C E LS L +A+ + GV+V N P ++HLLFADD F +++ K+ IL
Sbjct: 539 FILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEIL 598
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
S Y KASGQ++N KS S + + IL ++ GTGKYLGLP GR K+
Sbjct: 599 SRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRD 658
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F I D++ +K +SW+S+ LS+AG++V++K VL S+P Y MS F LP +LC +I+ ++
Sbjct: 659 IFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLT 718
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
FWW +K W++W KL+ K GG+ F+++ N ++L K GWR+L ++L++
Sbjct: 719 RFWWDTKPDVRK-TSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLS 777
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
RI +Y +F E +L PS WRSI + ILK G W I +G +S+WN+ W+
Sbjct: 778 RILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSI 837
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWN 804
+ P+ +LRVS I N W+
Sbjct: 838 SKPLVPIGPALREHQDLRVSALINQNTLQWD 868
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 372 bits (954), Expect = e-101
Identities = 184/463 (39%), Positives = 278/463 (59%), Gaps = 23/463 (4%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK L IS+ Q+AFVPG++I DNV+ A E++H +K + + G VA+K DISKAYDR
Sbjct: 886 RLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDR 945
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EWN+L +VM ++GF+ +W+KWIM+CV +V Y VL+NG+ G I P RG+RQGDPLSPYL
Sbjct: 946 VEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYL 1005
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F+ CAE LS ++RKAE I+G+K+ + ISHLLFADD F RA+ +++ I
Sbjct: 1006 FLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIF 1065
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
YE+ASGQ +N KS + + + + +LG+ V G GKYLGLP +GR K
Sbjct: 1066 KKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVE 1125
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F +I +V ++ W+ LS AG+E++IK + ++P Y M+ F LP +C+EI ++
Sbjct: 1126 LFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLIT 1185
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWWG + +G + FK+L FN A+L KQ WRILT +L+A
Sbjct: 1186 AFWWG-------------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLA 1226
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R+YK Y+P + + G + S+ W SI + K +L+ G R ++GDG + +W + W+
Sbjct: 1227 RLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWL-- 1284
Query: 774 DVTIFPLDDVATTL-ANLRVSDCIMPNQKSWNIPLLNSIFTEQ 815
T+ P L +++V+D N++ W+ + + +
Sbjct: 1285 -PTLPPRPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPE 1326
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 372 bits (954), Expect = e-101
Identities = 184/467 (39%), Positives = 284/467 (60%), Gaps = 1/467 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RL+ L + +S+ QSAFV R I DN++ A E++H +K+ + + +A+K D+SKAYDR
Sbjct: 490 RLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDR 549
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW+YLR ++ +GF +W+ WIM CV +V Y VL+N G II RGLRQGDPLSP+L
Sbjct: 550 VEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFL 609
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C EGL+ L+ KA+ G + G++ N P++ HLLFADD +A+ ++ ++ IL
Sbjct: 610 FVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKIL 669
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VY A+GQ +NL KS V I LG+ T G G YLGLP SK
Sbjct: 670 KVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVD 729
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
+++KDR+ +K++ W ++CLS+ G+EVL+K V ++P + MS F LP++ C+ +E M
Sbjct: 730 MLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMA 789
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
SFWW ++K IHW SW++L + K GG+ F+++ +FN A+L KQ WR+L D L++
Sbjct: 790 SFWWDSCDHSRK-IHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLS 848
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R+ K+RYF +F ++ L PSF WRSI + +L G + ++GDG S+ VW + W+ +
Sbjct: 849 RLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDD 908
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHI 820
+ P L+V + P W+ +L+ +F + + I
Sbjct: 909 NGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRI 955
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 372 bits (954), Expect = e-101
Identities = 184/467 (39%), Positives = 284/467 (60%), Gaps = 1/467 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RL+ L + +S+ QSAFV R I DN++ A E++H +K+ + + +A+K D+SKAYDR
Sbjct: 487 RLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDR 546
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW+YLR ++ +GF +W+ WIM CV +V Y VL+N G II RGLRQGDPLSP+L
Sbjct: 547 VEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFL 606
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F++C EGL+ L+ KA+ G + G++ N P++ HLLFADD +A+ ++ ++ IL
Sbjct: 607 FVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKIL 666
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
VY A+GQ +NL KS V I LG+ T G G YLGLP SK
Sbjct: 667 KVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVD 726
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
+++KDR+ +K++ W ++CLS+ G+EVL+K V ++P + MS F LP++ C+ +E M
Sbjct: 727 MLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMA 786
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
SFWW ++K IHW SW++L + K GG+ F+++ +FN A+L KQ WR+L D L++
Sbjct: 787 SFWWDSCDHSRK-IHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLS 845
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
R+ K+RYF +F ++ L PSF WRSI + +L G + ++GDG S+ VW + W+ +
Sbjct: 846 RLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDD 905
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHI 820
+ P L+V + P W+ +L+ +F + + I
Sbjct: 906 NGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRI 952
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 371 bits (952), Expect = e-101
Identities = 189/479 (39%), Positives = 276/479 (57%), Gaps = 4/479 (0%)
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RL+ +LD +S+ QSAFVPGR I DN + A E HH++ A KLD+SKAYDR
Sbjct: 1138 RLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDR 1197
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
++W +L Q M K+GF+ W+KWIM+C+ V Y V +NG + P RGLRQGDPLSP+L
Sbjct: 1198 VDWEFLEQAMVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFL 1257
Query: 474 FIICAEGLSALIRKAEARGDINGVKVCNNAPIISHLLFADDCFLFFRANLNKAQKMRNIL 533
F+ A+GLS L+ + +G +N + +C +AP + HLLFADD LFF+A ++A M+ +L
Sbjct: 1258 FLFVADGLSFLLEEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVL 1317
Query: 534 SVYEKASGQAVNLQKSEFFCSRNVSPADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKA 593
Y +GQ +N K ++ A I L + KYLG P+ GR K
Sbjct: 1318 ETYASCTGQLINPSKCSIMFGQSSPTAVQNQIKQTLQISNSF-EDKYLGFPTPEGRMTKG 1376
Query: 594 TFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMN 653
F +++R+WK+I W K LS G+E+LIK VLQ++P Y M LF LP S+C+E+ K++
Sbjct: 1377 KFQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVR 1436
Query: 654 SFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIA 713
+FWWG + + HW SWD L K GGM F++ FN A+L +Q WR+L + D+L A
Sbjct: 1437 NFWWG-AEKGMRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCA 1495
Query: 714 RIYKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSISVWNNYWMRN 773
RI KA Y+P + ++ G N S WR+I +LK G W+IG+G S+ +W + W+
Sbjct: 1496 RILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPR 1555
Query: 774 DVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPLYPSVRED 832
+ P+ A LR ++ SW+ ++ F E I++ L + +D
Sbjct: 1556 SYSRRPIS--AKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRLEDD 1612
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.342 0.150 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,797,007,631
Number of Sequences: 2540612
Number of extensions: 69660792
Number of successful extensions: 198227
Number of sequences better than 10.0: 1032
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 355
Number of HSP's that attempted gapping in prelim test: 196013
Number of HSP's gapped (non-prelim): 1384
length of query: 1189
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1050
effective length of database: 510,215,326
effective search space: 535726092300
effective search space used: 535726092300
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 81 (35.8 bits)
Medicago: description of AC138131.4