BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137994.3 - phase: 0
(155 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB5... 66 3e-10
gb|AAT39964.1| putative gag polyprotein [Solanum demissum] 49 4e-05
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 49 5e-05
gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum] 48 9e-05
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 47 2e-04
gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum... 46 3e-04
gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum] 39 0.042
emb|CAH77656.1| conserved hypothetical protein [Plasmodium chaba... 37 0.12
emb|CAF90671.1| unnamed protein product [Tetraodon nigroviridis] 37 0.21
gb|AAQ10290.1| class V chitin synthase [Coccidioides posadasii] 35 0.47
emb|CAA76365.1| secretagogin [Homo sapiens] 35 0.80
emb|CAG79759.1| unnamed protein product [Yarrowia lipolytica CLI... 35 0.80
gb|EAA55501.1| hypothetical protein MG09308.4 [Magnaporthe grise... 34 1.0
emb|CAD91902.1| interleukin-12 beta chain precursor [Gallus gallus] 33 1.8
emb|CAH72415.1| SCGN [Homo sapiens] gi|56202611|emb|CAI21585.1| ... 33 2.3
ref|XP_518281.1| PREDICTED: similar to secretagogin precursor [P... 33 2.3
gb|EAL30421.1| GA17699-PA [Drosophila pseudoobscura] 33 2.3
gb|EAL31132.1| GA21134-PA [Drosophila pseudoobscura] 33 3.0
ref|NP_637753.1| hypothetical protein XCC2399 [Xanthomonas campe... 32 3.9
ref|YP_242799.1| hypothetical protein XC_1713 [Xanthomonas campe... 32 3.9
>pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB50037.1| RPE15
gene product
Length = 219
Score = 65.9 bits (159), Expect = 3e-10
Identities = 31/58 (53%), Positives = 43/58 (73%)
Query: 77 AQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEEGVREGRLVKE 134
A++ P L+E+E T+ FLKTL + + + M+ SAPNNF++MVTM LEE VREG +V E
Sbjct: 15 ARVSPRLDEEELTQTFLKTLKKEHKERMIVSAPNNFSDMVTMGTRLEEAVREGIIVLE 72
>gb|AAT39964.1| putative gag polyprotein [Solanum demissum]
Length = 421
Score = 48.9 bits (115), Expect = 4e-05
Identities = 18/70 (25%), Positives = 42/70 (59%)
Query: 65 FKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEE 124
F+ YA WR+ A+++P ++E E +FL+ + Y+ ++++ F E++ + +E
Sbjct: 294 FREYAVRWREQAARVKPPMKELEMIDVFLQAQEPDYFHYLLSAVGKTFTEVIKVGEMVEN 353
Query: 125 GVREGRLVKE 134
G++ G++V +
Sbjct: 354 GIKSGKIVSQ 363
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 48.5 bits (114), Expect = 5e-05
Identities = 26/84 (30%), Positives = 44/84 (51%), Gaps = 4/84 (4%)
Query: 48 TYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVAS 107
T L Q ESFK Y AQ WR+ A+++P + E+E T +F+ TL + D M +
Sbjct: 252 TQLQSLCQKSNESFKEY----AQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSC 307
Query: 108 APNNFAEMVTMSMHLEEGVREGRL 131
+F+++V E ++ G++
Sbjct: 308 PFGSFSDVVICGERTESLIKTGKI 331
>gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum]
Length = 1105
Score = 47.8 bits (112), Expect = 9e-05
Identities = 26/84 (30%), Positives = 44/84 (51%), Gaps = 4/84 (4%)
Query: 48 TYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVAS 107
T L Q ESFK Y AQ WR+ A+++P + E+E T +F+ TL + D M +
Sbjct: 253 TQLQSLCQKSGESFKEY----AQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSC 308
Query: 108 APNNFAEMVTMSMHLEEGVREGRL 131
+F+++V E ++ G++
Sbjct: 309 PFGSFSDVVICGERTESLIKTGKI 332
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 46.6 bits (109), Expect = 2e-04
Identities = 26/84 (30%), Positives = 44/84 (51%), Gaps = 4/84 (4%)
Query: 48 TYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVAS 107
T L Q ESFK Y AQ WR+ A+++P + E+E T +F+ TL + D M +
Sbjct: 253 TQLQSLCQKSGESFKEY----AQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSC 308
Query: 108 APNNFAEMVTMSMHLEEGVREGRL 131
+F+++V E ++ G++
Sbjct: 309 PFVSFSDVVICGERTESLIKTGKI 332
>gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Length = 1784
Score = 46.2 bits (108), Expect = 3e-04
Identities = 17/70 (24%), Positives = 41/70 (58%)
Query: 65 FKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEE 124
F+ YA WR+ A+++ ++E E +FL+ + Y+ ++++ F E++ + +E
Sbjct: 786 FREYAVRWREQAARVKLSMKESEMIDVFLQAQEPDYFHYLLSAVGKTFVEVIKVGEMVEN 845
Query: 125 GVREGRLVKE 134
G++ G++V +
Sbjct: 846 GIKSGKIVSQ 855
>gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum]
Length = 1716
Score = 38.9 bits (89), Expect = 0.042
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 58 KESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVT 117
K+ ++ +A WR A++RP + EKE ++F++ FAE+V
Sbjct: 308 KQKSTESYREFAYRWRKEAARVRPPMSEKEIVEVFVRVA--------------KFAEIVK 353
Query: 118 MSMHLEEGVREGRLV 132
+ +E+G+R G++V
Sbjct: 354 IGETIEDGLRTGKIV 368
>emb|CAH77656.1| conserved hypothetical protein [Plasmodium chabaudi]
Length = 1323
Score = 37.4 bits (85), Expect = 0.12
Identities = 29/104 (27%), Positives = 48/104 (45%), Gaps = 8/104 (7%)
Query: 41 PFPQAAMTYSSPLTQNDKESFK--TYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQ 98
P Q Y+ LT N++ K + K Y+ + ++ L++ E +K FL LDQ
Sbjct: 1053 PSKQLDNHYTKLLTTNEQIKLKMENFQKIYSYFLNHIITFLKQKLKQFE-SKSFLSHLDQ 1111
Query: 99 FYYDNMVASA--PNNFAEMVTMSMHLEEGV---REGRLVKENVP 137
Y + SA PNN + T + H E + + L+ +N+P
Sbjct: 1112 NYQNKNETSAKSPNNVVDTFTFNYHTENNIDVQKLNELILDNIP 1155
>emb|CAF90671.1| unnamed protein product [Tetraodon nigroviridis]
Length = 751
Score = 36.6 bits (83), Expect = 0.21
Identities = 26/91 (28%), Positives = 42/91 (45%), Gaps = 2/91 (2%)
Query: 59 ESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVT- 117
ES K Y ++D R L+EKE + LK L + ++ A P +E++
Sbjct: 22 ESQKKQMLQYQTRFKDVVRAYRSLLKEKEALEASLKVLSASHETDLSAQRPQQTSELLED 81
Query: 118 -MSMHLEEGVREGRLVKENVPTDRSEDEDQE 147
S+H E+ V V E+ ++SE+E E
Sbjct: 82 GCSLHSEDSVDTAASVDESSRGEQSEEEQAE 112
>gb|AAQ10290.1| class V chitin synthase [Coccidioides posadasii]
Length = 1772
Score = 35.4 bits (80), Expect = 0.47
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 MLEGYLWSTPLSSGEVFRPVVSEVQAPFVQQTTPIPQTGLPFPQAAMTYSSPLT 54
+L +L S PL + E+ ++ ++ PFV Q TP L +P A+TY+ LT
Sbjct: 108 LLPAFLASLPLPTPEIAYTALAAIR-PFVSQVTPFDPARLLYPSFAVTYTFALT 160
>emb|CAA76365.1| secretagogin [Homo sapiens]
Length = 276
Score = 34.7 bits (78), Expect = 0.80
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 70 QWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEEGVREG 129
Q WR F A + ++EEKE FL L + D+ V A N ++ M ++ ++G
Sbjct: 19 QVWRRFDADEKGYIEEKELDAFFLHMLMKLGTDDTVMKA--NLHKVKQQFMTTQDASKDG 76
Query: 130 RL-VKENVPTDRSEDED 145
R+ +KE SEDE+
Sbjct: 77 RIRMKELAGMFLSEDEN 93
>emb|CAG79759.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50553506|ref|XP_504164.1| hypothetical protein
[Yarrowia lipolytica]
Length = 352
Score = 34.7 bits (78), Expect = 0.80
Identities = 24/76 (31%), Positives = 39/76 (50%), Gaps = 8/76 (10%)
Query: 63 TYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHL 122
TY+++ W Q + + +K TK L + Y + N+ A + MSMHL
Sbjct: 256 TYYRSRKLNWE----QDKENFLDKGATKKDLTVNVPYLY----IGSTNDIALIPEMSMHL 307
Query: 123 EEGVREGRLVKENVPT 138
+E V +G+L +E+VPT
Sbjct: 308 DEYVEKGKLTREHVPT 323
>gb|EAA55501.1| hypothetical protein MG09308.4 [Magnaporthe grisea 70-15]
gi|39959096|ref|XP_364463.1| hypothetical protein
MG09308.4 [Magnaporthe grisea 70-15]
Length = 1084
Score = 34.3 bits (77), Expect = 1.0
Identities = 17/55 (30%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
Query: 9 TPLSSGEVFRPVVSEVQAPFVQQTTPIPQTGLPFPQAAMTYSSPLTQNDKESFKT 63
+P ++G FR V+ E+++ +Q P+P+ P P + M ++ PL + E KT
Sbjct: 737 SPRTTGAKFR-VLPELRSSLARQQPPLPEELEPSPSSTMDFNKPLPKTPPEQQKT 790
>emb|CAD91902.1| interleukin-12 beta chain precursor [Gallus gallus]
Length = 314
Score = 33.5 bits (75), Expect = 1.8
Identities = 27/105 (25%), Positives = 50/105 (46%), Gaps = 21/105 (20%)
Query: 21 VSEVQAPFVQQTTPIPQTGLPFPQAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIR 80
++E ++P V+ T L Q +T SSP+ + DK ++TAQ +
Sbjct: 144 MTENESPSVKFTI----RSLKGSQGDVTCSSPVARTDKSV------------TEYTAQCQ 187
Query: 81 -----PHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSM 120
P EE + T++FL+ +D+ Y+N +S+ + ++ SM
Sbjct: 188 KENYCPFAEEHQPTEMFLEVIDEVEYENYTSSSSSEISKARPTSM 232
>emb|CAH72415.1| SCGN [Homo sapiens] gi|56202611|emb|CAI21585.1| SCGN [Homo sapiens]
gi|12804351|gb|AAH03036.1| Secretagogin, precursor [Homo
sapiens] gi|12653139|gb|AAH00336.1| Secretagogin,
precursor [Homo sapiens]
gi|21264511|sp|O76038|SEGN_HUMAN Secretagogin
gi|15055537|ref|NP_008929.2| secretagogin precursor
[Homo sapiens]
Length = 276
Score = 33.1 bits (74), Expect = 2.3
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 70 QWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEEGVREG 129
Q W+ F A + ++EEKE FL L + D+ V A N ++ M ++ ++G
Sbjct: 19 QVWQRFDADEKGYIEEKELDAFFLHMLMKLGTDDTVMKA--NLHKVKQQFMTTQDASKDG 76
Query: 130 RL-VKENVPTDRSEDED 145
R+ +KE SEDE+
Sbjct: 77 RIRMKELAGMFLSEDEN 93
>ref|XP_518281.1| PREDICTED: similar to secretagogin precursor [Pan troglodytes]
Length = 230
Score = 33.1 bits (74), Expect = 2.3
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 70 QWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEEGVREG 129
Q W+ F A + ++EEKE FL L + D+ V A N ++ M ++ ++G
Sbjct: 19 QVWQRFDADEKGYIEEKELDAFFLHMLMKLGTDDTVMKA--NLHKVKQQFMTTQDASKDG 76
Query: 130 RL-VKENVPTDRSEDED 145
R+ +KE SEDE+
Sbjct: 77 RIRMKELAGMFLSEDEN 93
>gb|EAL30421.1| GA17699-PA [Drosophila pseudoobscura]
Length = 631
Score = 33.1 bits (74), Expect = 2.3
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 25/131 (19%)
Query: 2 LEGYLWSTPLSSGEVFRPVVSEVQAPFVQ---------------QTTPIPQTGLPFPQAA 46
L GY W G V + + ++ A +Q Q T + T P A
Sbjct: 111 LNGYKWK-----GRVLKALAAKASADPLQKKRAAEGATDGKPKRQRTAVEAT---CPLAG 162
Query: 47 MTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIF-LKTLDQFYYDNMV 105
+TY L Q +E T K Y Q R Q +PHL+ ++ ++ T++ + N
Sbjct: 163 ITYDDQLKQKSEE-MSTLLKKYTQELRKINPQAKPHLDSFKFNEVLPSPTVNGYRNKNEF 221
Query: 106 ASAPNNFAEMV 116
N+ E+V
Sbjct: 222 TVGKNSEGEVV 232
>gb|EAL31132.1| GA21134-PA [Drosophila pseudoobscura]
Length = 1103
Score = 32.7 bits (73), Expect = 3.0
Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 7/58 (12%)
Query: 6 LWSTPLSSGEVFR-------PVVSEVQAPFVQQTTPIPQTGLPFPQAAMTYSSPLTQN 56
L+++PL SG V++ P S Q VQ +P+P P Q + Y+ P+T N
Sbjct: 135 LYTSPLPSGYVYQTSSPPTPPAESTPQRIQVQAPSPLPLVTQPIAQPFIMYTQPITTN 192
>ref|NP_637753.1| hypothetical protein XCC2399 [Xanthomonas campestris pv. campestris
str. ATCC 33913] gi|21113553|gb|AAM41677.1| conserved
hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 1445
Score = 32.3 bits (72), Expect = 3.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 10 PLSSGEVFRP----VVSEVQAPFVQQTTPIP-QTGL---PFPQAAMTYSSPLTQNDKESF 61
P SG+ FR +V EV P + PI Q GL P+A Y Q+ ++++
Sbjct: 252 PRLSGDGFRVDGARLVREVAVPATGEAAPIKVQLGLLTHELPEAQAEYDRIAGQSPQQAY 311
Query: 62 KTYFKAYAQWWRD 74
+ + Y +WW D
Sbjct: 312 QQHVARYNRWWVD 324
>ref|YP_242799.1| hypothetical protein XC_1713 [Xanthomonas campestris pv. campestris
str. 8004] gi|66573369|gb|AAY48779.1| conserved
hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 1445
Score = 32.3 bits (72), Expect = 3.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 10 PLSSGEVFRP----VVSEVQAPFVQQTTPIP-QTGL---PFPQAAMTYSSPLTQNDKESF 61
P SG+ FR +V EV P + PI Q GL P+A Y Q+ ++++
Sbjct: 252 PRLSGDGFRVDGARLVREVAVPATGEAAPIKVQLGLLTHELPEAQAEYDRIAGQSPQQAY 311
Query: 62 KTYFKAYAQWWRD 74
+ + Y +WW D
Sbjct: 312 QQHVARYNRWWVD 324
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,458,335
Number of Sequences: 2540612
Number of extensions: 11792843
Number of successful extensions: 31262
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 31242
Number of HSP's gapped (non-prelim): 45
length of query: 155
length of database: 863,360,394
effective HSP length: 117
effective length of query: 38
effective length of database: 566,108,790
effective search space: 21512134020
effective search space used: 21512134020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC137994.3