BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137667.10 + phase: 0 /pseudo
(43 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_465923.1| putative Sm protein F [Oryza sativa (japonica c... 86 2e-16
gb|AAP37664.1| At2g43810 [Arabidopsis thaliana] gi|2281089|gb|AA... 80 2e-14
emb|CAB75800.1| U6 snRNA-associated Sm-like protein [Arabidopsis... 80 2e-14
gb|AAM63434.1| U6 snRNA-associated Sm-like protein [Arabidopsis ... 80 2e-14
gb|AAH30427.1| Lsm6 protein [Mus musculus] gi|51593502|gb|AAH785... 77 1e-13
ref|XP_574220.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 77 1e-13
ref|XP_420431.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 77 1e-13
gb|AAH72549.1| Zgc:92379 [Danio rerio] gi|50344808|ref|NP_001002... 76 2e-13
ref|XP_315329.2| ENSANGP00000021121 [Anopheles gambiae str. PEST... 76 3e-13
emb|CAG11060.1| unnamed protein product [Tetraodon nigroviridis] 76 3e-13
gb|AAR10017.1| similar to Drosophila melanogaster CG9344 [Drosop... 75 4e-13
ref|XP_134104.1| PREDICTED: LSM6 homolog, U6 small nuclear RNA a... 74 1e-12
gb|AAK73913.1| Lsm sm-like protein protein 6 [Caenorhabditis ele... 71 7e-12
emb|CAE74418.1| Hypothetical protein CBG22150 [Caenorhabditis br... 71 7e-12
gb|AAX30121.1| unknown [Schistosoma japonicum] 70 2e-11
emb|CAC18540.1| putative U6-snRNA-associated protein [Echinococc... 70 2e-11
ref|XP_643590.1| hypothetical protein DDB0202447 [Dictyostelium ... 67 2e-10
ref|XP_344138.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 63 2e-09
ref|XP_488137.2| PREDICTED: similar to Sm protein F [Mus musculus] 63 2e-09
ref|XP_532682.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 62 3e-09
>ref|XP_465923.1| putative Sm protein F [Oryza sativa (japonica cultivar-group)]
gi|48716974|dbj|BAD23667.1| putative Sm protein F [Oryza
sativa (japonica cultivar-group)]
Length = 101
Score = 86.3 bits (212), Expect = 2e-16
Identities = 41/43 (95%), Positives = 42/43 (97%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL +G
Sbjct: 58 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDG 100
>gb|AAP37664.1| At2g43810 [Arabidopsis thaliana] gi|2281089|gb|AAB64025.1|
putative small nuclear ribonucleoprotein polypeptide F
[Arabidopsis thaliana] gi|25408906|pir||G84870
hypothetical protein At2g43810 [imported] - Arabidopsis
thaliana gi|15224366|ref|NP_181909.1| small nuclear
ribonucleoprotein F, putative / U6 snRNA-associated
Sm-like protein, putative / Sm protein F, putative
[Arabidopsis thaliana]
Length = 91
Score = 80.1 bits (196), Expect = 2e-14
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K TL++G
Sbjct: 48 MNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSDG 90
>emb|CAB75800.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|28394039|gb|AAO42427.1| putative U6 snRNA-associated
Sm protein [Arabidopsis thaliana]
gi|27754440|gb|AAO22668.1| putative U6 snRNA-associated
Sm protein [Arabidopsis thaliana]
gi|15232179|ref|NP_191540.1| small nuclear
ribonucleoprotein F, putative / U6 snRNA-associated
Sm-like protein, putative / Sm protein F, putative
[Arabidopsis thaliana] gi|11358907|pir||T47805 U6
snRNA-associated Sm-like protein - Arabidopsis thaliana
Length = 91
Score = 80.1 bits (196), Expect = 2e-14
Identities = 38/43 (88%), Positives = 40/43 (92%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST T+A+G
Sbjct: 48 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTVNMTVADG 90
>gb|AAM63434.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 91
Score = 80.1 bits (196), Expect = 2e-14
Identities = 38/43 (88%), Positives = 40/43 (92%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST T+A+G
Sbjct: 48 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTVNMTVADG 90
>gb|AAH30427.1| Lsm6 protein [Mus musculus] gi|51593502|gb|AAH78551.1| MGC85411
protein [Xenopus laevis] gi|5262862|emb|CAB45869.1|
Lsm6 protein [Homo sapiens] gi|16359118|gb|AAH16026.1|
Sm protein F [Homo sapiens] gi|67514294|gb|AAH98230.1|
Unknown (protein for MGC:107039) [Mus musculus]
gi|5919153|gb|AAD56230.1| U6 snRNA-associated Sm-like
protein LSm6 [Homo sapiens]
gi|61227728|sp|P62313|LSM6_MOUSE U6 snRNA-associated
Sm-like protein LSm6 gi|61227727|sp|P62312|LSM6_HUMAN
U6 snRNA-associated Sm-like protein LSm6 (Sm protein F)
gi|63995242|gb|AAY41032.1| unknown [Homo sapiens]
gi|26347205|dbj|BAC37251.1| unnamed protein product
[Mus musculus] gi|12859166|dbj|BAB31555.1| unnamed
protein product [Mus musculus]
gi|5901998|ref|NP_009011.1| Sm protein F [Homo sapiens]
Length = 80
Score = 77.4 bits (189), Expect = 1e-13
Identities = 36/40 (90%), Positives = 38/40 (95%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 40
MNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Sbjct: 41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
>ref|XP_574220.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 (Sm
protein F) [Rattus norvegicus]
Length = 111
Score = 77.4 bits (189), Expect = 1e-13
Identities = 36/40 (90%), Positives = 38/40 (95%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 40
MNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Sbjct: 72 MNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 111
>ref|XP_420431.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 (Sm
protein F) [Gallus gallus]
Length = 614
Score = 77.4 bits (189), Expect = 1e-13
Identities = 36/40 (90%), Positives = 38/40 (95%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 40
MNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Sbjct: 575 MNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 614
>gb|AAH72549.1| Zgc:92379 [Danio rerio] gi|50344808|ref|NP_001002077.1| zgc:92379
[Danio rerio]
Length = 80
Score = 76.3 bits (186), Expect = 2e-13
Identities = 35/40 (87%), Positives = 38/40 (94%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 40
MNIA+EQTEEYVNGQLKNKYGDAF+RGNNVLYIST KR +
Sbjct: 41 MNIAVEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQKRKM 80
>ref|XP_315329.2| ENSANGP00000021121 [Anopheles gambiae str. PEST]
gi|55238130|gb|EAA11294.2| ENSANGP00000021121
[Anopheles gambiae str. PEST]
Length = 79
Score = 75.9 bits (185), Expect = 3e-13
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA++QTEEYVNGQLKNKYGDAFIRGNNVLYIST KR
Sbjct: 40 MNIALDQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKR 77
>emb|CAG11060.1| unnamed protein product [Tetraodon nigroviridis]
Length = 80
Score = 75.9 bits (185), Expect = 3e-13
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEYVNGQLKNKYGDAF+RGNNVLYIST KR
Sbjct: 41 MNIAIEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQKR 78
>gb|AAR10017.1| similar to Drosophila melanogaster CG9344 [Drosophila yakuba]
gi|21064499|gb|AAM29479.1| RE43665p [Drosophila
melanogaster] gi|7291213|gb|AAF46645.1| CG9344-PA
[Drosophila melanogaster] gi|24656550|ref|NP_611528.1|
CG9344-PA [Drosophila melanogaster]
gi|54636795|gb|EAL26198.1| GA21716-PA [Drosophila
pseudoobscura]
Length = 79
Score = 75.5 bits (184), Expect = 4e-13
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNI +EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR
Sbjct: 40 MNICLEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKR 77
>ref|XP_134104.1| PREDICTED: LSM6 homolog, U6 small nuclear RNA associated [Mus
musculus]
Length = 104
Score = 73.9 bits (180), Expect = 1e-12
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEYVNGQLKNKY DAFIRGNNVLYIST KR
Sbjct: 41 MNIALEQTEEYVNGQLKNKYRDAFIRGNNVLYISTQKR 78
>gb|AAK73913.1| Lsm sm-like protein protein 6 [Caenorhabditis elegans]
gi|17510579|ref|NP_490883.1| u6 snRNA-associated
Sm-like protein (lsm-5) [Caenorhabditis elegans]
Length = 77
Score = 71.2 bits (173), Expect = 7e-12
Identities = 33/38 (86%), Positives = 36/38 (93%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEY NGQL+NKYGDAFIRGNNVLYISTS +
Sbjct: 40 MNIALEQTEEYSNGQLQNKYGDAFIRGNNVLYISTSTK 77
>emb|CAE74418.1| Hypothetical protein CBG22150 [Caenorhabditis briggsae]
Length = 77
Score = 71.2 bits (173), Expect = 7e-12
Identities = 33/38 (86%), Positives = 36/38 (93%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEY NGQL+NKYGDAFIRGNNVLYISTS +
Sbjct: 40 MNIALEQTEEYSNGQLQNKYGDAFIRGNNVLYISTSTK 77
>gb|AAX30121.1| unknown [Schistosoma japonicum]
Length = 78
Score = 70.1 bits (170), Expect = 2e-11
Identities = 31/38 (81%), Positives = 34/38 (88%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MN+ +EQTEEYV+GQLKNKYGD FIRGNNV YIST KR
Sbjct: 40 MNVVLEQTEEYVDGQLKNKYGDTFIRGNNVFYISTQKR 77
>emb|CAC18540.1| putative U6-snRNA-associated protein [Echinococcus
multilocularis]
Length = 83
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/38 (81%), Positives = 33/38 (86%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MN+ +EQTEEYV GQLKNKYGD FIRGNNV YIST KR
Sbjct: 42 MNVVLEQTEEYVEGQLKNKYGDTFIRGNNVFYISTQKR 79
>ref|XP_643590.1| hypothetical protein DDB0202447 [Dictyostelium discoideum]
gi|60471654|gb|EAL69610.1| hypothetical protein
DDB0202447 [Dictyostelium discoideum]
Length = 88
Score = 66.6 bits (161), Expect = 2e-10
Identities = 30/38 (78%), Positives = 32/38 (83%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNI MEQTEEY+NGQLK KYGD F+RGNNVLYIS R
Sbjct: 50 MNIVMEQTEEYLNGQLKTKYGDCFLRGNNVLYISAQPR 87
>ref|XP_344138.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6
(Sm protein F) [Rattus norvegicus]
Length = 98
Score = 62.8 bits (151), Expect = 2e-09
Identities = 29/31 (93%), Positives = 30/31 (96%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 31
MNIA+EQTEEYVNGQLKNKYGDAFIRGNN L
Sbjct: 41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNGL 71
>ref|XP_488137.2| PREDICTED: similar to Sm protein F [Mus musculus]
Length = 336
Score = 62.8 bits (151), Expect = 2e-09
Identities = 29/31 (93%), Positives = 30/31 (96%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 31
MNIA+EQTEEYVNGQLKNKYGDAFIRGNN L
Sbjct: 65 MNIALEQTEEYVNGQLKNKYGDAFIRGNNDL 95
>ref|XP_532682.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 (Sm
protein F) [Canis familiaris]
Length = 287
Score = 62.4 bits (150), Expect = 3e-09
Identities = 28/29 (96%), Positives = 29/29 (99%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNN 29
MNIA+EQTEEYVNGQLKNKYGDAFIRGNN
Sbjct: 226 MNIALEQTEEYVNGQLKNKYGDAFIRGNN 254
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.312 0.130 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,484,151
Number of Sequences: 2540612
Number of extensions: 1351526
Number of successful extensions: 2733
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2638
Number of HSP's gapped (non-prelim): 99
length of query: 43
length of database: 863,360,394
effective HSP length: 19
effective length of query: 24
effective length of database: 815,088,766
effective search space: 19562130384
effective search space used: 19562130384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)
Medicago: description of AC137667.10