BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137553.12 + phase: 0
(535 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT38702.1| putative RNase H domain containing protein [Solan... 125 3e-27
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 125 4e-27
gb|AAU89759.1| hypothetical protein [Solanum tuberosum] 114 6e-24
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 113 1e-23
gb|AAM09536.1| reverse transcriptase [Medicago sativa] 112 2e-23
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 110 1e-22
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 106 2e-21
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 105 5e-21
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 103 2e-20
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 100 2e-19
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 97 2e-18
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 95 6e-18
pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana gi... 92 4e-17
ref|NP_197389.1| expressed protein [Arabidopsis thaliana] 92 4e-17
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 90 2e-16
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 89 3e-16
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript... 87 1e-15
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 87 2e-15
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 86 4e-15
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 86 4e-15
>gb|AAT38702.1| putative RNase H domain containing protein [Solanum demissum]
Length = 722
Score = 125 bits (314), Expect = 3e-27
Identities = 117/451 (25%), Positives = 188/451 (40%), Gaps = 40/451 (8%)
Query: 66 SSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNMLPK---- 121
S WS ++ +N W++ G+ ++ W DNW G + N+LP
Sbjct: 63 SHTWSKMLKIRHSVENNILWIIYAGN-VSMWWDNWMGNGALS---------NILPPPSHY 112
Query: 122 ---KLRNYMQNFNWCFPDDILSLFPDM---RLLASKVTIPKHCIRDKLIWKHSNNGELTL 175
+++++ W F D + + P ++++ + P D IW S NG T
Sbjct: 113 NKDNVKDFIHKREWDF-DKLSDILPPQVVNQIVSIPIGDPNQS--DYAIWIPSENGHFTT 169
Query: 176 QDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLPSMCSL 235
+ AY K + IW P + L WR + NKLP D + N+ S C
Sbjct: 170 KSAYVDCSNTREKNDMRNKIWHGKFPFKMSFLTWRLVQNKLPFYDTVGKFVDNIDSNCVC 229
Query: 236 CNNM-SETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDL----WNICNGSWNPQCKT 290
C NM +ET +H+FL A LW F G L S +L WN+ +
Sbjct: 230 CKNMKTETINHVFLNSDVASYLWKKFGGTLGIDTRASSTINLLKTWWNV---QTHNSIHN 286
Query: 291 VIIASL-INIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGNLSRKVASPSI---S 346
VII +L I I IW R ++ + K W ++ + + +S ++ PS +
Sbjct: 287 VIIHTLPILIFWEIWKRRCACKYGDQKKMWYRTMEN---HVWWNLKMSLRMTFPSFEIGN 343
Query: 347 NFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTDGSTSGSLSSCGGIFRNCNSEML 406
++ L +L P KI+ W P +N K NTDGS S + G I R+ M+
Sbjct: 344 SWRDLLNKVESLRPYPKWKIVH--WNTPNINCVKINTDGSFSSGNAGLGWIVRDHTRRMI 401
Query: 407 ICFGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVIRAFKNQSIVPWHLRN 466
+ F + ++ AE A I + + N +LE+DS+LV+ +N ++
Sbjct: 402 MAFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVVDMVRNGQATNLKIKG 461
Query: 467 RWMNCMLLTRNMNFIATHIFRERNVCADLLA 497
+ + + MN H +RE N AD LA
Sbjct: 462 VVEDIIQVVAKMNCEVNHCYREANQVADALA 492
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 125 bits (313), Expect = 4e-27
Identities = 127/512 (24%), Positives = 210/512 (40%), Gaps = 35/512 (6%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRV----IRNST 58
+AW +VC EGGLGIRS +N A K+ W L + WA+VLRS+ +R++T
Sbjct: 87 IAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARVLRSKYRIGGLRDTT 146
Query: 59 CIH-HHVYSSIWSGAKTEFQN-LIDNSNWLVGDGDTINCWLDNWCGETLV-DLFDIDSQQ 115
I+ SS W K+ + +I NW+VGDG I W D W E + DL ++
Sbjct: 147 WINTKRNASSTWRSIKSGLREVVIPGMNWVVGDGKDICFWDDKWLVEDPIRDLAAVELPA 206
Query: 116 LNMLPKKLRNYMQNFNWCFPDDILSLFPDMRL-LASKVTIPKHCIRDKLIWKHSNNGELT 174
K + + W I + +RL L S V D+ W + NG+ T
Sbjct: 207 DFQGIKIRELWHEGSGWDLAKIIPYVSEGVRLRLLSMVVDTVTGSNDRTSWGATANGQFT 266
Query: 175 LQDAYKFKKTNFPKV----NWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLP 230
++ AY F + + + +W + +W + + TD + +
Sbjct: 267 VKSAYSFLLQSETQAQNMRQFFDRVWRVTTTERVRVFIWLVVHQVIMTDVERRRRHLSAS 326
Query: 231 SMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDLWNICNGSWNPQCKT 290
+C +C ET H+ +C +W + S W N S + +
Sbjct: 327 GVCQVCKGGDETILHVLRDCPSIAGIWGRLVPRGKITAFFASNILDWVYQNLSDVTEIRG 386
Query: 291 VIIASLINIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGNLSRKVASPSISNFVI 350
A+L I+ +W+A W+ ++ + R V + +
Sbjct: 387 CPWATLFAIV--VWWA------------WKWRCGNVFGENGRCRDRVRFVVDQ--AREIW 430
Query: 351 LKKFCVTLHPPRAPKI-IEVIWQPPPLNWTKCNTDGSTSGS--LSSCGGIFRNCNSEMLI 407
+ + R ++ + + W PP W K NTDG++ G+ L++ GG+ R+ + +
Sbjct: 431 IAHLNLRRGAMRGSEVEMSIKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCV 490
Query: 408 CFGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVIRAFKNQSIVPWHLRNR 467
F N GI ++ AEL G + +A L LEVDS LV+ F I H +
Sbjct: 491 GFVLNIGICSAPLAELWGVYYGLHIAWERGIRRLELEVDSTLVV-GFLQAGIEDSHPLSF 549
Query: 468 WMNCM--LLTRNMNFIATHIFRERNVCADLLA 497
+ ++R+ +H++RE N AD LA
Sbjct: 550 LVRLCYGFISRDWIVRISHVYREANRLADGLA 581
>gb|AAU89759.1| hypothetical protein [Solanum tuberosum]
Length = 1095
Score = 114 bits (286), Expect = 6e-24
Identities = 98/346 (28%), Positives = 147/346 (42%), Gaps = 17/346 (4%)
Query: 161 DKLIWKHSNNGELTLQDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDD 220
D IW S NG T + AY K + IW P + L WR + NKLP D
Sbjct: 333 DYAIWIPSENGHFTTKSAYVDCSNTREKNDMRNKIWHGKFPFKMSFLTWRLVQNKLPFYD 392
Query: 221 NLMNKGCNLPSMCSLCNNM-SETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDL--- 276
+ N+ S C C NM +ET +H+FL A LW F G L S +L
Sbjct: 393 TVGKFVDNIDSNCVCCKNMKTETINHVFLNSDVASYLWKKFGGTLGIDTRASSTINLLKT 452
Query: 277 -WNICNGSWNPQCKTVIIASL-INIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTG 334
WN+ + VII +L I I IW R ++ + K W ++ + +
Sbjct: 453 WWNV---QTHNSIHNVIIHTLPILIFWEIWKRRCACKYGDQKKMWYRTMEN---HVWWNL 506
Query: 335 NLSRKVASPSI---SNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTDGSTSGSL 391
+S ++ PS +++ L +L P KI+ W P +N K NTDGS S
Sbjct: 507 KMSLRMTFPSFEIGNSWRDLLNKVESLRPYPKWKIVH--WNTPNINCVKINTDGSFSSGN 564
Query: 392 SSCGGIFRNCNSEMLICFGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVI 451
+ G I R+ M++ F + ++ AE A I + + N +LE+DS+LV+
Sbjct: 565 AGLGWIVRDHTRRMIMAFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVV 624
Query: 452 RAFKNQSIVPWHLRNRWMNCMLLTRNMNFIATHIFRERNVCADLLA 497
+N ++ + + + MN H +RE N AD LA
Sbjct: 625 DMVRNGQATNLKIKGVVEDIIQVVAKMNCEVNHCYREANQVADALA 670
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 113 bits (283), Expect = 1e-23
Identities = 130/535 (24%), Positives = 222/535 (41%), Gaps = 85/535 (15%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSR-----VIRNS 57
++W+K+C EGG+G+RS +N A K+ W L Q +E WA+V+R + V S
Sbjct: 702 LSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTS 761
Query: 58 TCIHHHVYSSIWSGAKTEFQN-LIDNSNWLVGDGDTINCWLDNW-CGETLVDLFDIDSQQ 115
+SS W + ++ W+ GDG TI WLD W E LV+L
Sbjct: 762 WLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVEL------G 815
Query: 116 LNMLPKKLRNYMQNFNWC----FPDDILSLF-PD--MRLLASKVTIPKHCIRDKLIWKHS 168
+M+P+ R + W + +IL L+ P+ R L S V D++ WK +
Sbjct: 816 TDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGT 875
Query: 169 NNGELTLQDAYKFKKTNF---PKV-NWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMN 224
+G T++ AY + + P + ++ IW P + +W N + T+ +
Sbjct: 876 QDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVR 935
Query: 225 KGCNLPSMCSLCNNMSETTHHLFLECSFALNLW----------SWFAGILN--CSINIQS 272
+ + ++CS+CN ET H+ +C +W +F+ L N+
Sbjct: 936 RHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDP 995
Query: 273 KEDLWNICNG-----SWNPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASII 327
+ +W G +W +C V +R+ ++ + +A +
Sbjct: 996 VKGIWPTLFGMGIWWAWKWRCCDVF---------------GERKICRDRLKFIKDMAEEV 1040
Query: 328 SNASLTGNLSRKVASPSISNFVILKKFCVTLHPPRAPKIIEVI-WQPPPLNWTKCNTDGS 386
R+V ++ N P ++ +I WQ P W K TDG+
Sbjct: 1041 ----------RRVHVGAVGN------------RPNGVRVERMIRWQVPSDGWVKITTDGA 1078
Query: 387 TSGS--LSSCGGIFRNCNSEMLICFGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLE 444
+ G+ L++ GG RN E L F N G + AEL GA + +A + + L+
Sbjct: 1079 SRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELD 1138
Query: 445 VDSELVIRAFKNQSIVPWHLRNRWMNCM--LLTRNMNFIATHIFRERNVCADLLA 497
+D +LV+ F + + H + + TR+ +H++RE N AD LA
Sbjct: 1139 LDCKLVV-GFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLA 1192
>gb|AAM09536.1| reverse transcriptase [Medicago sativa]
Length = 168
Score = 112 bits (281), Expect = 2e-23
Identities = 54/162 (33%), Positives = 82/162 (50%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQWAQVLRSRVIRNSTCIHHH 63
V+W KVC D G L +R +N AS + + W L S EQWA + R R + N T H+
Sbjct: 3 VSWSKVCQSKDTGVLAVRDPAQVNRASLLLLTWKLITSNEQWAHICRVRFLNNYTPKSHY 62
Query: 64 VYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNMLPKKL 123
+ SS+W G K+ Q + +S W VG+G I W D W + + ++I ++ + K+
Sbjct: 63 ITSSVWPGLKSNIQYIFYHSIWTVGNGRNIRFWSDKWLDSPIAEHWNIPPSLISDIELKV 122
Query: 124 RNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHCIRDKLIW 165
+++ N WC PD I P + +T+P I D L W
Sbjct: 123 NDFIVNGTWCLPDYIQQKDPALAAKIQSITLPVDDIPDVLHW 164
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 110 bits (275), Expect = 1e-22
Identities = 87/344 (25%), Positives = 150/344 (43%), Gaps = 61/344 (17%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQWAQVLRSRVIRNSTCIHHH 63
V W VC+ D+GGLG+ L +N A K W L E W +++ ++ +
Sbjct: 645 VNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWRLENEEGWWQEIIYAKYCSDKPLSGLR 704
Query: 64 VY---SSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGE----------------- 103
+ S W G + +VG+G+ W D+W G
Sbjct: 705 LKAGSSHFWQGVMEVKDDFFSFCTKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVITK 764
Query: 104 --TLVDL----FDIDSQQLNMLPKKLRNYMQNFN-WCFPDDILSLFPDMRLLASKVTIPK 156
T+ DL D + ++ KLR++ + N W + + +
Sbjct: 765 RITIADLNRKGIDCMKFRRDLHGDKLRDWRKIVNSW-----------------EGLNLVE 807
Query: 157 HCIRDKLIWKHSNNGELTLQDAY---KFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFML 213
+C +DKL W S +G+ T++ Y K ++T+FP K IW +P + +W F
Sbjct: 808 NC-KDKLWWTLSKDGKFTVRSFYRALKLQQTSFPN----KKIWKFRVPLKIRIFIWFFTK 862
Query: 214 NKLPTDDNLMNKGCNL-PSMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQ- 271
NK+ T DNL+ +G + C C+ + ET HLF +C A +W+ I+ C++N++
Sbjct: 863 NKILTKDNLLKRGWRKGDNKCQFCDKV-ETVQHLFFDCPLARLIWN----IIACALNVKP 917
Query: 272 --SKEDLWNICNGSWNPQCKTVIIASLINIINSIWYARNQRRFQ 313
S++DL+ S + K ++I + ++ SIW RN+ F+
Sbjct: 918 VLSRQDLFGSWIQSMDKFTKNLVIVGIAAVLWSIWKCRNKACFE 961
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411640|pir||H84529 hypothetical protein
At2g15510 [imported] - Arabidopsis thaliana
Length = 1138
Score = 106 bits (264), Expect = 2e-21
Identities = 108/476 (22%), Positives = 190/476 (39%), Gaps = 76/476 (15%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEE-QWAQVLRSRVIRNSTCIH- 61
V+W+K+C + GGLG R + N A K W + Q +A+ +SR + +
Sbjct: 615 VSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYPSFLFARFFKSRYFDDEEFLEA 674
Query: 62 ------HHVYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDID--- 112
+ SI G + + L VG+G ++N W+D W +FDI
Sbjct: 675 DLGVRPSYACCSILFGRELLAKGLRKE----VGNGKSLNVWMDPW-------IFDIAPRL 723
Query: 113 ------SQQLNMLPKKLRNYMQNFNWCFPDDILS--LFP-DMRLLASKVTIPKHCIRDKL 163
S L++ L N+ C+ D+L +P D+ L+ + + + D
Sbjct: 724 PLQRHFSVNLDLKVNDLINFEDR---CWKRDLLEELFYPTDVELITKRNPVVN--MDDFW 778
Query: 164 IWKHSNNGELTLQDAY----------KFKKTNF-PKVNWAKH-IWSPDIPPSKALLVWRF 211
+W H+ GE +++ Y ++ N P N K +WS P + +WR
Sbjct: 779 VWLHAKTGEYSVKSGYWLAFQSNKLDLIQQANLLPSTNGLKEQVWSTKSSPKIKMFLWRI 838
Query: 212 MLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQ 271
+ LP D ++ +G ++ C +C + E+T+H+ CS A +W+ +G+ Q
Sbjct: 839 LSAALPVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWA-LSGVPTPEFGFQ 897
Query: 272 SKEDLWNICNGSWNPQCKTVIIASLIN-----IINSIWYARNQRRFQNIKIHWRSSIASI 326
+ NI K +++ L+ ++ +W RN+ F I +SI
Sbjct: 898 NASIFANI--QFLFELKKMILVPDLVKRSWPWVLWRLWKNRNKLFFDGITFCPLNSIV-- 953
Query: 327 ISNASLTGNLSRKVASPSISNFVILKKFCVTLHPPRAPKIIEVI--WQPPPLNWTKCNTD 384
K+ ++ F + V+ ++I W+PPP W KCN
Sbjct: 954 ------------KIQEDTLEWFQAQSQIRVS-ESEEGQRVIPFTHSWEPPPEGWVKCNIG 1000
Query: 385 GSTSGSLSSCGG--IFRNCNSEMLICFGEN-TGIGNSLHAELSGAMRAIELAISHQ 437
+ SG CGG + R+ + +++ G N A L AI+ SH+
Sbjct: 1001 SAWSGKKKVCGGAWVLRDEHGSVILHSRRAFNGCSNKKEASLRCIFWAIDSMRSHR 1056
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 105 bits (261), Expect = 5e-21
Identities = 113/471 (23%), Positives = 186/471 (38%), Gaps = 39/471 (8%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIHH 62
VAWK++ EGGLG R L N A K W L Q +A+V+++R ++ + +
Sbjct: 995 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDA 1054
Query: 63 HV---YSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNML 119
V S W+ L + L+GDG I LDN + + M
Sbjct: 1055 KVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMT 1114
Query: 120 PKKLRNYMQNFNWCFPDDILSLFPDM--RLLASKVTIPKHCIRDKLIWKHSNNGELTLQD 177
L ++ + + D +S F D ++ + K DK+IW ++ GE T++
Sbjct: 1115 INNLFERKGSY-YFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRS 1173
Query: 178 AYKF----KKTNFPKVN-------WAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKG 226
Y TN P +N IW+ I P +WR + L T + L +G
Sbjct: 1174 GYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRG 1233
Query: 227 CNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFAG---ILNCSINIQSKEDLWNICNGS 283
+ +C C+ +E+ +H C FA W W + I N ++ +E++ NI N
Sbjct: 1234 MRIDPICPRCHRENESINHALFTCPFATMAW-WLSDSSLIRNQLMSNDFEENISNILNFV 1292
Query: 284 WNPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGNLSRKVASP 343
+ + +I IW ARN F + S +++S + T + S
Sbjct: 1293 QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFR---ESPSKTVLSAKAETHDWLNATQSH 1349
Query: 344 SISNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTD-GSTSGSLSSCGGIFRNCN 402
KK T P R ++ W+ PP + KCN D G L + GG +
Sbjct: 1350 --------KK---TPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNH 1398
Query: 403 SEMLICFG--ENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVI 451
I +G + N L AE + A++ + +++E D + +I
Sbjct: 1399 YGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLI 1449
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 103 bits (256), Expect = 2e-20
Identities = 113/470 (24%), Positives = 185/470 (39%), Gaps = 37/470 (7%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIHH 62
VAWK++ EGGLG R L N A K W L Q +A+V+++R ++ + +
Sbjct: 1221 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDA 1280
Query: 63 HV---YSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNML 119
V S W+ L + L+GDG I LDN + + M
Sbjct: 1281 KVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMT 1340
Query: 120 PKKLRNYMQNFNWCFPDDILSLFPDM--RLLASKVTIPKHCIRDKLIWKHSNNGELTLQD 177
L ++ + + D +S F D ++ + K DK+IW ++ GE T++
Sbjct: 1341 INNLFERKGSY-YFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRS 1399
Query: 178 AYKF----KKTNFPKVN-------WAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKG 226
Y TN P +N IW+ I P +WR + L T + L +G
Sbjct: 1400 GYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRG 1459
Query: 227 CNLPSMCSLCNNMSETTHHLFLECSFALNLW--SWFAGILNCSINIQSKEDLWNICNGSW 284
+ C C+ +E+ +H C FA W S + I N ++ +E++ NI N
Sbjct: 1460 MRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQ 1519
Query: 285 NPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGNLSRKVASPS 344
+ + +I IW ARN F + S +++S + T + S
Sbjct: 1520 DTTMSDFHKLLPVWLIWRIWKARNNVVFNKFR---ESPSKTVLSAKAETHDWLNATQSH- 1575
Query: 345 ISNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTD-GSTSGSLSSCGGIFRNCNS 403
KK T P R ++ W+ PP + KCN D G L + GG +
Sbjct: 1576 -------KK---TPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHY 1625
Query: 404 EMLICFG--ENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVI 451
I +G + N L AE + A++ + +++E D + +I
Sbjct: 1626 GTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLI 1675
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 99.8 bits (247), Expect = 2e-19
Identities = 106/472 (22%), Positives = 185/472 (38%), Gaps = 81/472 (17%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQW-AQVLRSRVIRNSTCIHH 62
++W K+ + GGLG R + N A K W L Q + ++VLR++ C
Sbjct: 1040 LSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRP 1099
Query: 63 HVYSSI---WSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNML 119
S++ W + + L + W VGDG IN W D W + + N++
Sbjct: 1100 KQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGW-SRKPMTPRGANLV 1158
Query: 120 PKKLRNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHC-IRDKLIWKHSNNGELTLQDA 178
K + + + + +D+LS +A+ +IP H + D L W G T++ A
Sbjct: 1159 TK-VEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEMEDVLAWHFDARGCFTVKSA 1217
Query: 179 YKFKK--------TNFPKV-NWA-------KHIWSPDIPPSKALLVWRFMLNKLPTDDNL 222
YK ++ P V NW K +W +P +WR N L NL
Sbjct: 1218 YKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANL 1277
Query: 223 MNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDLWNICNG 282
++G ++ + C +C +E HLF +C +W ++N+ E+L ++
Sbjct: 1278 HHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQ--------ALNL---EELRSMLEQ 1326
Query: 283 SWNPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGNLSRKVAS 342
+ + N++ SI+ R
Sbjct: 1327 QTSGK----------NVLQSIYCRPENER------------------------------- 1345
Query: 343 PSISNFVILKKFCVTLHPPRAPKIIE-VIWQPPPLNWTKCNTDGSTSGSL--SSCGGIFR 399
S V L ++ + ++P+ E +W+ PPLN+ K NTDG+ S ++ G + R
Sbjct: 1346 --TSAIVCLWQWWKERNEEKSPRTGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIR 1403
Query: 400 NCNSEMLIC-FGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELV 450
+ +L G + ++ HAE+ AI+ A + LE DS ++
Sbjct: 1404 DQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASERGMSRIELETDSMML 1455
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 96.7 bits (239), Expect = 2e-18
Identities = 66/278 (23%), Positives = 115/278 (40%), Gaps = 38/278 (13%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQW-AQVLRSRVIRNSTCIHH 62
+AW+K+ GGLG R + C N A + W L S + A+V +++ N +
Sbjct: 751 IAWEKILYPKSHGGLGFRDMKCFNQALLARQAWRLLTSPDSLCARVFKAKYYPNGNLVDT 810
Query: 63 H---VYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNML 119
V SS+W G + L + W VG+G I W W + +N+L
Sbjct: 811 AFPTVSSSVWKGIQHGLDLLKQGTIWRVGNGHNIKIWRHKWVPH---------GEHINVL 861
Query: 120 PKKLRNYM-------QNFNWCFPDDILS--LFPDMRLLASKVTIPKHCIRDKLIWKHSNN 170
KK RN + N C+ + ++ L + K+ +P H + D W H +
Sbjct: 862 EKKGRNRLIYVNELINEENRCWNETLVRHVLKEEDANEVLKIRLPNHQMDDFPAWHHEKS 921
Query: 171 GELTLQDAYKFK---------------KTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNK 215
G T++ AYK T+ + W++ +W+ + + +W+ +K
Sbjct: 922 GLFTVKSAYKLAWNLSGKGVVQSSSSTATSGERKIWSR-VWNAKVQAKVKIFIWKLAQDK 980
Query: 216 LPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFA 253
LPT +N + + C +C E ++H +EC+ A
Sbjct: 981 LPTWENKRRRKIEMNGTCPVCGTKGENSYHATVECTKA 1018
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 94.7 bits (234), Expect = 6e-18
Identities = 100/411 (24%), Positives = 162/411 (39%), Gaps = 52/411 (12%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIHH 62
VAWK++ EGGLG R L N A K W + Q +A+V+++R ++++ I
Sbjct: 460 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDA 519
Query: 63 HVYSSI---WSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFD----IDSQQ 115
S WS + L + +++GDG TI +DN +VD + +Q
Sbjct: 520 KTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDN-----VVDSHPPRPLLTDEQ 574
Query: 116 LNMLPKKLRNYMQN--FNWCFPDDILSLFPDM--RLLASKVTIPKHCIRDKLIWKHSNNG 171
N L L N Q+ + C+ + L F D ++ + D+LIW +++ G
Sbjct: 575 HNGL--SLDNLFQHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTG 632
Query: 172 ELTLQDAYKFKKTNFPK------------VNWAKHIWSPDIPPSKALLVWRFMLNKLPTD 219
+ T++ Y + T+ P V+ IW+ I P +WR + LPT
Sbjct: 633 DYTVRSGY-WLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTT 691
Query: 220 DNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWF-AGILNCSINIQSKEDLWN 278
D L +G + C C +E+ +H C FA W + SI + ED N
Sbjct: 692 DRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIED--N 749
Query: 279 ICNGSWNPQCKTVIIASLIN---IINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGN 335
I N Q T+ + + ++ IW ARN F N++ S +++ + T
Sbjct: 750 ISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNNLR---ESPSITVVRAKAETNE 806
Query: 336 LSRKVASPSISNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTDGS 386
+ P R W P + + KCN D S
Sbjct: 807 WLNATQTQGPRRL-----------PKRTTAAGNTTWVKPQMPYIKCNFDAS 846
>pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana
gi|9755374|gb|AAF98181.1| F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 92.0 bits (227), Expect = 4e-17
Identities = 68/276 (24%), Positives = 119/276 (42%), Gaps = 25/276 (9%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQ-SEEQWAQVLRSRVIRNSTCIHH 62
++W VC EGGLG+R+L N S +K+ W + S W + + +IR +
Sbjct: 507 ISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSL 566
Query: 63 HVYSSIWSGAKTEFQNLIDNSNWL----VGDGDTINCWLDNWCG-----ETLVDLFDID- 112
+S+ S + + D + VG+G++ + W D+W +T+ D ID
Sbjct: 567 KQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDL 626
Query: 113 --SQQLNMLPKKLRNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHCIRDKLIWKHSNN 170
++ ++ R + ++I + R+ S D ++W+ N+
Sbjct: 627 GIPREASVADAWTRRSRRRHRTSLLNEIEEMMAYQRIHHSDA-------EDTVLWRGKND 679
Query: 171 ---GELTLQDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLM--NK 225
+ +D + K V+W K +W P AL W + N+LPT D ++ N
Sbjct: 680 VFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNS 739
Query: 226 GCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFA 261
++ C LC N S+T HLF CS+A +W+ A
Sbjct: 740 SGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALA 775
>ref|NP_197389.1| expressed protein [Arabidopsis thaliana]
Length = 295
Score = 92.0 bits (227), Expect = 4e-17
Identities = 69/240 (28%), Positives = 108/240 (44%), Gaps = 15/240 (6%)
Query: 87 VGDGDTINCWLDNWC--GETLVDLFDIDSQQLNMLPK-KLRNYMQNFNWCFP---DDILS 140
+G+G++ + W D W G+ L L +QL + ++ +N +W P D
Sbjct: 16 MGNGESASFWYDAWTDFGQLLTFLGAAGPRQLRIRQDARVVEASRNGDWFLPAARSDNSQ 75
Query: 141 LFPDMRLLASKVTIPKHCIR--DKLIWKHSNNGEL---TLQDAYKFKKTNFPKVNWAKHI 195
LF L A + H R D +W+++ L + +D ++ + + P V WAK +
Sbjct: 76 LF----LAALTMAPVPHESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVV 131
Query: 196 WSPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALN 255
W + P +L+ W L +LPT D L G N+PS LC+N ET HLF ECSF+L
Sbjct: 132 WFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLA 191
Query: 256 LWSWFAGILNCSINIQSKEDLWNICNGSWNPQCKTVIIASLINIINSIWYARNQRRFQNI 315
+W +FA S I T++ L + + +W RN R F +I
Sbjct: 192 IWEFFASKFRPSPPFGLPAASSWILQLPLRSHSTTILKLLLQSAVYHVWKERNARIFTSI 251
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 90.1 bits (222), Expect = 2e-16
Identities = 100/438 (22%), Positives = 161/438 (35%), Gaps = 69/438 (15%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQ-SEEQWAQVLRSRVIRNSTCIHH 62
+ KK+ GG G + L C N A K W LF S+ +Q+ +SR N+ ++
Sbjct: 791 IGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNA 850
Query: 63 HVY---SSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGE-------TLVDLFDID 112
S W + L L+G+G+ N W+D W + L L +I
Sbjct: 851 RQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIH 910
Query: 113 SQQLNMLPKKLRNY-MQNFNWCFPDDILSLFPDMRLLASKVTIPKHCIRDKLIWKHSNNG 171
+ +++ RN+ ++ F + + L R L S D W +NNG
Sbjct: 911 MKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMHQRPLISS--------EDSYCWAGTNNG 962
Query: 172 ELTLQDAYK----------FKKTN-FPKVN-WAKHIWSPDIPPSKALLVWRFMLNKLPTD 219
T++ Y+ FK+ + +P VN +WS + P + +W+ + L +
Sbjct: 963 LYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVE 1022
Query: 220 DNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWF-----AGILNCSINIQSKE 274
D L ++G C C ET +HL +C FA +W+ A SI
Sbjct: 1023 DRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINH 1082
Query: 275 DLWNICNGSWNPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTG 334
+ N N +TV ++ IW RN+ FQ + +A +L
Sbjct: 1083 VIQNSQNFGIPRHMRTVSPW----LLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWI 1138
Query: 335 NLSRKVA---SPSISNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCN--TDGSTSG 389
N K + SPS E W PPP KCN S
Sbjct: 1139 NAQEKSSGGVSPS-----------------------EHKWNPPPAGELKCNIGVAWSRQK 1175
Query: 390 SLSSCGGIFRNCNSEMLI 407
L+ + R+ ++L+
Sbjct: 1176 QLAGVSWVLRDSMGQVLL 1193
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana] gi|7488320|pir||T01301
RNA-directed DNA polymerase homolog T14P8.10 -
Arabidopsis thaliana
Length = 657
Score = 89.0 bits (219), Expect = 3e-16
Identities = 68/276 (24%), Positives = 114/276 (40%), Gaps = 44/276 (15%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ---------WAQVLRSRVI 54
++W VC+ + GGLG++ L N +K+ W LF + W ++ + R +
Sbjct: 401 ISWDIVCSSKESGGLGLKRLSSWNKVLALKLIWLLFTASGSLWVSWVRWVWRKLCKLREV 460
Query: 55 RNSTCIHHHVYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGE-TLVDLFDIDS 113
I VG G T W DNW G L+ L +
Sbjct: 461 ARPFVICE------------------------VGSGITARFWQDNWTGHGPLIHLTGLTG 496
Query: 114 QQL--NMLPKKLRNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHCI----RDKLIWKH 167
QL + +R+ ++N +W S P + LL S + + + D +WK
Sbjct: 497 PQLVGLSITSVVRDAIRNDDWWIASS-RSRNPVILLLKSLLPPVGNLVDCEHDDSYLWKV 555
Query: 168 SN---NGELTLQDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMN 224
+ + + + D ++ + V+W K +W + P A + W N+L T D L +
Sbjct: 556 GDRVPSSKFSTADTWRALQPFSVSVSWHKAVWFTNQVPKHAFISWVTAWNRLHTRDRLRS 615
Query: 225 KGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWF 260
G +P+ C LCN + ET HLF C F+ +W++F
Sbjct: 616 WGLIVPAECVLCNLVDETRDHLFFACRFSSRIWTFF 651
>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25370673|pir||G84536 hypothetical protein
At2g16110 [imported] - Arabidopsis thaliana
Length = 323
Score = 87.0 bits (214), Expect = 1e-15
Identities = 56/184 (30%), Positives = 85/184 (45%), Gaps = 11/184 (5%)
Query: 87 VGDGDTINCWLDNWCGE-TLVDLFDIDSQQLNMLPKK--LRNYMQNFNWCFPDDILSLFP 143
+G G+T + W DNW G+ L+DL + + +P +R+ ++ NW S P
Sbjct: 41 IGSGETASFWQDNWTGQGPLIDLTGTNGPRSVGMPLNAVVRDALRGDNWWLSSS-RSRNP 99
Query: 144 DMRLLASKVTIPKHCIR----DKLIWKHSNNGELTLQDAYKFKKTNFPK---VNWAKHIW 196
+ LL S + + I D WK ++ + A K P V W K +W
Sbjct: 100 SIALLKSVLPSSESMIECQHDDVYKWKPDHHAPSNIFSASKTWTALNPDGVLVPWQKSVW 159
Query: 197 SPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNL 256
D P A + W +L T D L G N+P++C LCN + ET HLF +C F+ +
Sbjct: 160 FKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQCQFSNEI 219
Query: 257 WSWF 260
WS+F
Sbjct: 220 WSFF 223
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 86.7 bits (213), Expect = 2e-15
Identities = 68/277 (24%), Positives = 112/277 (39%), Gaps = 37/277 (13%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQ-SEEQWAQVLRSRVIRNSTC--I 60
++W VC DEGGLG+RSL N +K+ W + S W + + ++RN++ +
Sbjct: 860 ISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEV 919
Query: 61 HHHVYSSIWSGAKT-EFQNLIDN-SNWLVGDGDTINCWLDNWCG----------ETLVDL 108
V W K +++ + S VG+G + W DNW L+DL
Sbjct: 920 KQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDL 979
Query: 109 -----FDIDSQQLNMLPKKLRNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHCIRDKL 163
++ N ++ RN + N +D L D R DK+
Sbjct: 980 GISRRMTVEEAWTNRRQRRHRNDVYNVI----EDALKKSWDTRTETE----------DKV 1025
Query: 164 IWKHSNN---GELTLQDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDD 220
+W+ ++ + +D + ++ +V W K IW P + W +LPT D
Sbjct: 1026 LWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGD 1085
Query: 221 NLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLW 257
++N + + C C ET HLF CSF +W
Sbjct: 1086 RMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIW 1122
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 85.5 bits (210), Expect = 4e-15
Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 42/284 (14%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIH- 61
++W+++ D+GG G + L C N A K W + Q + +++V +SR NS +
Sbjct: 817 LSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSA 876
Query: 62 ------HHVYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGE-------TLVDL 108
+ + SI G + Q L ++G+G W D W +
Sbjct: 877 TRGSRPSYAWRSILFGRELLMQGL----RTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRF 932
Query: 109 FDIDSQQLNMLPKKLRNYMQNFNWCFPDDILSLFP--DMRLLASKVTIPKHCIRDKLIWK 166
++D + ++ RN+ N + LFP D+ ++ + P D W
Sbjct: 933 INVDLKVSQLIDPTSRNWNLNM-------LRDLFPWKDVEIILKQR--PLFFKEDSFCWL 983
Query: 167 HSNNGELTLQDAYKFKKTNF-----------PKVNWA-KHIWSPDIPPSKALLVWRFMLN 214
HS+NG +++ Y+F P VN IW+ P + +W+ +
Sbjct: 984 HSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHG 1043
Query: 215 KLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWS 258
+P +D L +G C +C+ +ET +H+ EC A +W+
Sbjct: 1044 AIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWA 1087
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 85.5 bits (210), Expect = 4e-15
Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 42/284 (14%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIH- 61
++W+++ D+GG G + L C N A K W + Q + +++V +SR NS +
Sbjct: 838 LSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSA 897
Query: 62 ------HHVYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGE-------TLVDL 108
+ + SI G + Q L ++G+G W D W +
Sbjct: 898 TRGSRPSYAWRSILFGRELLMQGL----RTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRF 953
Query: 109 FDIDSQQLNMLPKKLRNYMQNFNWCFPDDILSLFP--DMRLLASKVTIPKHCIRDKLIWK 166
++D + ++ RN+ N + LFP D+ ++ + P D W
Sbjct: 954 INVDLKVSQLIDPTSRNWNLNM-------LRDLFPWKDVEIILKQR--PLFFKEDSFCWL 1004
Query: 167 HSNNGELTLQDAYKFKKTNF-----------PKVNWA-KHIWSPDIPPSKALLVWRFMLN 214
HS+NG +++ Y+F P VN IW+ P + +W+ +
Sbjct: 1005 HSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHG 1064
Query: 215 KLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWS 258
+P +D L +G C +C+ +ET +H+ EC A +W+
Sbjct: 1065 AIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWA 1108
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.136 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,007,084,725
Number of Sequences: 2540612
Number of extensions: 43591669
Number of successful extensions: 115220
Number of sequences better than 10.0: 330
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 114501
Number of HSP's gapped (non-prelim): 494
length of query: 535
length of database: 863,360,394
effective HSP length: 133
effective length of query: 402
effective length of database: 525,458,998
effective search space: 211234517196
effective search space used: 211234517196
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)
Medicago: description of AC137553.12