BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137546.8 + phase: 0 /pseudo
(374 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 271 2e-71
gb|AAP54167.1| putative reverse transcriptase [Oryza sativa (jap... 198 2e-49
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 195 2e-48
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 194 5e-48
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 191 4e-47
ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (j... 189 9e-47
ref|NP_912454.1| Putative reverse transcriptase [Oryza sativa (j... 189 1e-46
gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cult... 188 3e-46
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 187 3e-46
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 187 3e-46
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 185 2e-45
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 185 2e-45
emb|CAE05638.2| OSJNBa0038O10.4 [Oryza sativa (japonica cultivar... 184 5e-45
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 183 6e-45
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 183 8e-45
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 182 1e-44
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 182 1e-44
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 182 2e-44
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 181 4e-44
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 181 4e-44
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 271 bits (694), Expect = 2e-71
Identities = 133/295 (45%), Positives = 191/295 (64%)
Query: 80 SRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQHFMSH 139
SR W++EGD N+++FH+L + RR N + + E I ++ +F F
Sbjct: 212 SRARWIKEGDSNTRYFHTLATIRRHKNHLQYIKTEGKNISKPGEIKEEAVAYFQHIFAEE 271
Query: 140 NVVRPSVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIKEFWI 199
RP + L F LS +E LI PF+ +E+ EA+ D+ K+ GPDG NF FIK W
Sbjct: 272 FSTRPVFNGLNFNKLSESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWE 331
Query: 200 VLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKIIAKLL 259
V+K DI + V +F +G L G N+ FI LI K +P+ N+FRPIS+VG + KIIAK+L
Sbjct: 332 VIKKDIYKIVEDFWASGSLPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKIIAKIL 391
Query: 260 ANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLKKDLMLFKVDFEKTYDSV 319
A RL+ V+ ++ QS+F+K RQILDG+LIA+E++D ++K + ++ K+DF K +DS+
Sbjct: 392 ARRLQRVMDHLIGPYQSSFIKGRQILDGVLIASELIDSCRRMKNEAVVLKLDFHKAFDSI 451
Query: 320 DWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGDPL 374
W YL VL M+FP++WR WIR CV +A+A+VL+NGSP+ F L+RGLRQGDPL
Sbjct: 452 SWNYLEWVLCQMNFPLVWRSWIRSCVMSASAAVLINGSPSSVFKLQRGLRQGDPL 506
>gb|AAP54167.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37535156|ref|NP_921880.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|22758328|gb|AAN05532.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 820
Score = 198 bits (504), Expect = 2e-49
Identities = 113/298 (37%), Positives = 162/298 (53%), Gaps = 2/298 (0%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQHFM 137
Q SR WL+EGD N++FFH M++RRR N I + + + E + HF +
Sbjct: 110 QASRVKWLKEGDANTRFFHIKMNARRRKNFIHCLQQDGNTLHTHEDKAAHLHAHF-NSIL 168
Query: 138 SHNVVRPSVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIKEF 197
R N + LS + + + +PF+ DE+ EAI + K+ GPD F K
Sbjct: 169 GTRRQRGCTLNWEALRLSTIQDDSMDEPFTEDEIWEAIKNSPKEKAPGPDDFTGAFYKNC 228
Query: 198 WIVLKDDIMQFVSEFHR-NGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKIIA 256
W ++K +I+ + FH G IN I L+ K D+P+ +NDFRPISL+ S+ K+I+
Sbjct: 229 WHIIKKEIVDVFASFHNLTGGNFGSINRAMITLLPKKDSPRSMNDFRPISLIHSVAKLIS 288
Query: 257 KLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLKKDLMLFKVDFEKTY 316
K LA RL +G +VS QSAF+KKR I D L + +K + FK+D K +
Sbjct: 289 KTLAMRLAARLGDLVSHAQSAFIKKRCIQDNFLYVRNMARSLHMQRKPSLFFKLDITKAF 348
Query: 317 DSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGDPL 374
DSV W YL E+L+C F WR WI + TA++ +L+NG + +RGLRQGDPL
Sbjct: 349 DSVSWEYLVEMLQCRGFSQHWRNWIVLLLSTASSRILLNGIAGEPTTHRRGLRQGDPL 406
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 195 bits (495), Expect = 2e-48
Identities = 114/305 (37%), Positives = 174/305 (56%), Gaps = 8/305 (2%)
Query: 77 WQQ-SRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRI-EGVEPVRNAIFTHFAQ 134
WQ+ SR W+R GD N+K+FH+ +RR N I ++ E+ R E + +F +
Sbjct: 336 WQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKK 395
Query: 135 HFMSHNVVRPSVSNLQFQALSVTE--GEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFG 192
F S +V +V L+ V++ L+ P + +EV+ A + K GPDG+N
Sbjct: 396 LFASEDVGY-TVEELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGF 454
Query: 193 FIKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMN 252
++FW + D I + V F R+G + +G+N T I LI K+ +++ DFRPISL +
Sbjct: 455 LYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIY 514
Query: 253 KIIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEV---VDEAFKLKKDLMLFK 309
K+I KL+ANRL+ ++ S++SETQ+AFVK R I D ILIA+E+ + K ++ + K
Sbjct: 515 KVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIK 574
Query: 310 VDFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLR 369
D K YD V+W +L + ++ + F W + I ECV + VL+NG+P E RGLR
Sbjct: 575 TDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLR 634
Query: 370 QGDPL 374
QGDPL
Sbjct: 635 QGDPL 639
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana] gi|7488321|pir||T01871
RNA-directed DNA polymerase homolog T24M8.8 -
Arabidopsis thaliana
Length = 1164
Score = 194 bits (492), Expect = 5e-48
Identities = 113/316 (35%), Positives = 176/316 (54%), Gaps = 8/316 (2%)
Query: 66 RFIP*LNTSICWQQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDV--RIEGVEP 123
R + S +Q+SR +WLREGDMNS +FH + S+R+ N I L + V RIEG +
Sbjct: 239 RILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHI-HFLSDPVGDRIEGQQN 297
Query: 124 VRNAIFTHFAQHFMSHNVV----RPSVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYD 179
+ N +F + S + + +SNL S + L PFS +++K A
Sbjct: 298 LENHCVEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLP 357
Query: 180 SFKSSGPDGVNFGFIKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRL 239
K+SGPDG + F W ++ ++ + + EF +GKL K N T +VLI K+ N +
Sbjct: 358 RNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSM 417
Query: 240 NDFRPISLVGSMNKIIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAF 299
+DFRPIS + ++ K+I+KLL +RL+ + + +S +QSAF+ R L+ +L+A E+V
Sbjct: 418 SDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYN 477
Query: 300 KLK-KDLMLFKVDFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSP 358
K + KVD K +DSV W ++ L+ ++ P + WI EC+ TA+ SV++NG
Sbjct: 478 KKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHS 537
Query: 359 TDEFPLKRGLRQGDPL 374
F +GLRQGDP+
Sbjct: 538 AGHFWSSKGLRQGDPM 553
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 191 bits (484), Expect = 4e-47
Identities = 116/302 (38%), Positives = 162/302 (53%), Gaps = 5/302 (1%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQH-F 136
Q+SR +WL+EGD N++FFHS R + N I + E+ I + V + T + Q +
Sbjct: 890 QRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSMTSVLETMATEYFQEVY 949
Query: 137 MSHNVVRP-SVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIK 195
+ + P SV+ L + ++ E L + F +E+ +AI KS GPDG F +
Sbjct: 950 KADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQ 1009
Query: 196 EFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKII 255
W LK DI+ V F ++G + +G+N T IVLI K D P L D+RPISL + K++
Sbjct: 1010 RNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVV 1069
Query: 256 AKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLKK---DLMLFKVDF 312
+K L NRLR ++ +VS+ QSAF++ R I D L+A E K KK +K+D
Sbjct: 1070 SKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDL 1129
Query: 313 EKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGD 372
K YD VDW +L L + F W WI CV T SV NG+ F RGLRQGD
Sbjct: 1130 SKAYDRVDWRFLELALNKLGFAHRWVSWIMSCVTTVRYSVKFNGTLLRSFAPTRGLRQGD 1189
Query: 373 PL 374
PL
Sbjct: 1190 PL 1191
>ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29893671|gb|AAP06925.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 870
Score = 189 bits (481), Expect = 9e-47
Identities = 114/298 (38%), Positives = 168/298 (56%), Gaps = 2/298 (0%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQHFM 137
Q SR +REGD N+KFFH +++RRR NTI + + + I HFA FM
Sbjct: 352 QASRVTHIREGDANTKFFHLKVNARRRRNTIQRLKKDSGWAVTHGEKESTIHDHFAS-FM 410
Query: 138 SHNVVRPSVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIKEF 197
RP+ N + +++ + L +PF+ +EV AI + + K+ GPDG F K
Sbjct: 411 GRPGPRPNELNWETLDITLIDLATLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFKVC 470
Query: 198 WIVLKDDIMQ-FVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKIIA 256
W ++KDDI+ F S ++ +N+ IVLI K D + ++D+RPISL+ S+ KI A
Sbjct: 471 WEIIKDDILLVFSSIYNLRCAHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFA 530
Query: 257 KLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLKKDLMLFKVDFEKTY 316
K+LA RLR + ++S QSAF+K R I D L + +L++ ++LFK+D K +
Sbjct: 531 KMLALRLRPHMHELISVNQSAFIKGRSIHDNYLFVRNMTRRYHRLRRAMLLFKLDITKAF 590
Query: 317 DSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGDPL 374
DSV W YL +L+ FP W W+ + ++T+ VL+NGSP RGLRQGDPL
Sbjct: 591 DSVRWDYLLALLQRKGFPTRWIDWLGALLSSSTSQVLLNGSPGQRIKHGRGLRQGDPL 648
>ref|NP_912454.1| Putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27452911|gb|AAO15295.1| Putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1183
Score = 189 bits (480), Expect = 1e-46
Identities = 117/298 (39%), Positives = 167/298 (55%), Gaps = 2/298 (0%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQHFM 137
Q SR +REGD N+KFFH ++ R+R NTI + ++ + I HFA FM
Sbjct: 77 QASRVTHIREGDANTKFFHLKINVRKRKNTIQRLRKDNGWAVTHGEKESTIHDHFAS-FM 135
Query: 138 SHNVVRPSVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIKEF 197
+ RP+ N + + + L KPFS +EV AI + + K+ GPDG F K
Sbjct: 136 GRSGPRPNELNWEALDIMPVDLATLGKPFSEEEVHRAIKEMPADKAPGPDGFTGAFFKAC 195
Query: 198 WIVLKDDIMQ-FVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKIIA 256
W ++K+DI+ F S F+ IN+ IVLI K D + ++D+RPISL+ S+ KI +
Sbjct: 196 WEIIKEDILLVFNSIFNLRCAHLNLINSANIVLIPKKDGAESVSDYRPISLIHSIAKIFS 255
Query: 257 KLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLKKDLMLFKVDFEKTY 316
KLLA RLR + +++S QSAF+K R I D L + +L++ +LFK+D K +
Sbjct: 256 KLLALRLRPHMHALISVNQSAFIKGRSIHDNFLFVWNMARSYHRLRRAKLLFKLDITKAF 315
Query: 317 DSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGDPL 374
DSV W YL +L+ FP W W+ + T+T+ VL+NGSP RGLRQGDPL
Sbjct: 316 DSVRWDYLLALLQQRGFPTRWVDWLGALLSTSTSQVLLNGSPGQRIKHGRGLRQGDPL 373
>gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 188 bits (477), Expect = 3e-46
Identities = 114/298 (38%), Positives = 167/298 (55%), Gaps = 2/298 (0%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQHFM 137
Q SR +REGD N+KFFH +++RRR NTI + + I HFA FM
Sbjct: 186 QASRVTHIREGDANTKFFHLRVNARRRRNTIQRLKKDSGWAVTHGEKELTIHDHFAS-FM 244
Query: 138 SHNVVRPSVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIKEF 197
RP+ N + ++ + L +PF+ +EV AI + + K+ GPDG F K
Sbjct: 245 GRPGPRPNELNWETLDITPIDLATLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFKVC 304
Query: 198 WIVLKDDIMQ-FVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKIIA 256
W ++KDDI+ F S ++ +N+ IVLI K D + ++D+RPISL+ S+ KI A
Sbjct: 305 WEIIKDDILLVFSSIYNLRCAHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFA 364
Query: 257 KLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLKKDLMLFKVDFEKTY 316
K+LA RLR + ++S QSAF+K R I D L ++ +L++ ++LFK+D K +
Sbjct: 365 KMLALRLRPHMHELISVNQSAFIKGRSIHDNYLFVRNMIRRYHRLRRAMLLFKLDITKAF 424
Query: 317 DSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGDPL 374
DSV W YL +L+ FP W W+ + ++T+ VL+NGSP RGLRQGDPL
Sbjct: 425 DSVRWDYLLALLQRKGFPTRWIDWLGALLSSSTSQVLLNGSPGQRIKHGRGLRQGDPL 482
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 187 bits (476), Expect = 3e-46
Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 14/309 (4%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDV--RIEGVEPVRNAIFTHFAQH 135
Q+S WL EGD N+ +FH + R+ NTI + L++D RIE + ++ I H
Sbjct: 351 QKSSISWLYEGDNNTAYFHKMADMRKSINTI-NFLIDDFGERIETQQGIKEGIKEHSCNF 409
Query: 136 FMS-------HNVVRPSVSNLQFQ-ALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPD 187
F S N + S NL SV + L + FS +++EA K+SGPD
Sbjct: 410 FESLLCGVEGENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPD 469
Query: 188 GVNFGFIKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISL 247
G + F K W V+ ++ + V EF R+G+L K N T +VLI K+ N ++ DFRPIS
Sbjct: 470 GYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISC 529
Query: 248 VGSMNKIIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLK--KDL 305
+ ++ K+IAKLL +RL+ ++ V+S +QSAF+ R + + +L+A E+V + K
Sbjct: 530 LNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIV-HGYNTKNISSR 588
Query: 306 MLFKVDFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLK 365
+ KVD K +DSV W ++ + ++ P + WI +C+ T SV+VNGS + F
Sbjct: 589 GMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSN 648
Query: 366 RGLRQGDPL 374
+GLRQGDPL
Sbjct: 649 KGLRQGDPL 657
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 187 bits (476), Expect = 3e-46
Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 14/309 (4%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDV--RIEGVEPVRNAIFTHFAQH 135
Q+S WL EGD N+ +FH + R+ NTI + L++D RIE + ++ I H
Sbjct: 351 QKSSISWLYEGDNNTAYFHKMADMRKSINTI-NFLIDDFGERIETQQGIKEGIKEHSCNF 409
Query: 136 FMS-------HNVVRPSVSNLQFQ-ALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPD 187
F S N + S NL SV + L + FS +++EA K+SGPD
Sbjct: 410 FESLLCGVEGENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPD 469
Query: 188 GVNFGFIKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISL 247
G + F K W V+ ++ + V EF R+G+L K N T +VLI K+ N ++ DFRPIS
Sbjct: 470 GYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISC 529
Query: 248 VGSMNKIIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLK--KDL 305
+ ++ K+IAKLL +RL+ ++ V+S +QSAF+ R + + +L+A E+V + K
Sbjct: 530 LNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIV-HGYNTKNISSR 588
Query: 306 MLFKVDFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLK 365
+ KVD K +DSV W ++ + ++ P + WI +C+ T SV+VNGS + F
Sbjct: 589 GMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSN 648
Query: 366 RGLRQGDPL 374
+GLRQGDPL
Sbjct: 649 KGLRQGDPL 657
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 185 bits (470), Expect = 2e-45
Identities = 115/302 (38%), Positives = 160/302 (52%), Gaps = 5/302 (1%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQH-F 136
Q+SR +WL+EGD N++FFHS R + N I + E+ I V + T + Q +
Sbjct: 978 QRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVY 1037
Query: 137 MSHNVVRP-SVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIK 195
+ + P SV+ L + ++ E L + F +E+ +AI KS PDG F +
Sbjct: 1038 KADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQ 1097
Query: 196 EFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKII 255
W LK DI+ V F ++G + KG+N T IVLI K D P L D+RPISL + K++
Sbjct: 1098 RNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVV 1157
Query: 256 AKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLKK---DLMLFKVDF 312
+K L NRLR ++ +VS+ QSAF++ R I D L+A E K KK +K+D
Sbjct: 1158 SKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDL 1217
Query: 313 EKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGD 372
K YD VDW +L L + F W WI CV T SV NG+ F RGLRQG+
Sbjct: 1218 SKAYDRVDWRFLELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGE 1277
Query: 373 PL 374
PL
Sbjct: 1278 PL 1279
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 185 bits (469), Expect = 2e-45
Identities = 113/303 (37%), Positives = 166/303 (54%), Gaps = 5/303 (1%)
Query: 77 WQQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVR-IEGVEPVRNAIFTHFAQH 135
+Q+SR+ W++ GD NSK+FH+L RR N I + E+ + + V++ ++F
Sbjct: 187 YQKSRSLWMKVGDNNSKYFHALTKQRRARNRIIGLHDENGKWFAEDKDVQHIAVSYFETL 246
Query: 136 FMSHNVVRPSVSNLQFQALSVTE-GEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFI 194
F N + S + + L + + L P + DEV+ A+ K+ GPDG+ F
Sbjct: 247 FNKSNPQNIAESLSEVKTLITDQINDFLTTPATEDEVRAALFLMHPEKAPGPDGMTALFF 306
Query: 195 KEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKI 254
++ W +K D++ V+ F ++G K +NTT I LI K + P R+ + RPISL KI
Sbjct: 307 QKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPISLCNVGYKI 366
Query: 255 IAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEV---VDEAFKLKKDLMLFKVD 311
I+K+L RL+ ++ S++SET SAFV+ R I D ILIA E+ + K M K D
Sbjct: 367 ISKILCQRLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNPSCKGKFMAIKTD 426
Query: 312 FEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQG 371
K YD V+W ++ E+LK M F W WI C+ T VL+NG P KRGLRQG
Sbjct: 427 MSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQG 486
Query: 372 DPL 374
DPL
Sbjct: 487 DPL 489
>emb|CAE05638.2| OSJNBa0038O10.4 [Oryza sativa (japonica cultivar-group)]
gi|50926570|ref|XP_473232.1| OSJNBa0038O10.4 [Oryza
sativa (japonica cultivar-group)]
Length = 1045
Score = 184 bits (466), Expect = 5e-45
Identities = 115/300 (38%), Positives = 167/300 (55%), Gaps = 6/300 (2%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQHFM 137
Q SR +REG+ N+KFFH +++RRR N+I + E+ + I HFA H M
Sbjct: 302 QASRLTHIREGEANTKFFHLRVNTRRRKNSIQRLRKENGWAVTHDEKEMTILDHFA-HLM 360
Query: 138 SHNVVRPSVSNLQFQALSVTEGE--GLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIK 195
P + L ++AL + + L +PFS E+ AI + KS GPDG F K
Sbjct: 361 GRP--GPRTNELNWEALDIQPFDLSTLEEPFSEQEIHRAIKEMPVDKSPGPDGYTGIFFK 418
Query: 196 EFWIVLKDDI-MQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKI 254
W ++K+D+ + F S F+ +N IVLI K + + ++D+RPISL+ S+ KI
Sbjct: 419 SCWDIVKEDVSLVFNSIFNLRCASLGLLNLANIVLIPKKEGAESVSDYRPISLIHSIAKI 478
Query: 255 IAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLKKDLMLFKVDFEK 314
+KLLA RLR + S+VS QSAF+K R I D L + + + ++LFK+D K
Sbjct: 479 FSKLLALRLRPHMRSLVSINQSAFIKGRSIHDNFLFVRNMARRFHRTNRPMLLFKLDITK 538
Query: 315 TYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGDPL 374
+DS+ W YL +L+ + FPV WR W+ + T+T+ VL+NG P RGLRQGDPL
Sbjct: 539 AFDSIRWDYLMALLQRLGFPVKWRYWLGALLYTSTSQVLLNGIPGQRITHGRGLRQGDPL 598
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 183 bits (465), Expect = 6e-45
Identities = 112/298 (37%), Positives = 165/298 (54%), Gaps = 2/298 (0%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQHFM 137
Q SR +REGD N+KFFH +++RRR NTI + + I HFA FM
Sbjct: 352 QASRVTHIREGDANTKFFHLKVNARRRRNTIQRLKKDSGWAVTHGDKELTIHDHFAS-FM 410
Query: 138 SHNVVRPSVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIKEF 197
RP+ N + ++ + L +PF+ +EV +AI + + K+ GPDG F K
Sbjct: 411 GRPGPRPNELNWETLDITPIDLATLGEPFTEEEVHKAIKEMPADKAPGPDGFTGAFFKVC 470
Query: 198 WIVLKDDIMQ-FVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKIIA 256
W ++KDDI+ F S ++ +N+ IVLI K D + ++D+RPISL+ S+ KI A
Sbjct: 471 WEIIKDDILLVFSSIYNLRCAHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFA 530
Query: 257 KLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAFKLKKDLMLFKVDFEKTY 316
K+LA RLR + ++S QSAF+K R I D L + + ++ ++LFK+D K +
Sbjct: 531 KMLALRLRPHMHELISVNQSAFIKGRSIHDNYLFVRNTIRRYHRQRRAMLLFKLDITKAF 590
Query: 317 DSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGDPL 374
DSV W YL +L+ FP W W+ + ++ + VL+NGSP RGLRQGDPL
Sbjct: 591 DSVRWDYLLALLQRKGFPTRWIDWLGALLSSSISQVLLNGSPGQRIKHGRGLRQGDPL 648
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 183 bits (464), Expect = 8e-45
Identities = 111/304 (36%), Positives = 164/304 (53%), Gaps = 7/304 (2%)
Query: 77 WQQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEP--VRNAIFTHFAQ 134
+Q+SR+ W++ GD NSKFFH+L RR N I L ++ I +E ++N ++F
Sbjct: 121 YQKSRSLWMKLGDNNSKFFHALTKQRRARNRITG-LHDENGIWSIEDDDIQNIAVSYFQN 179
Query: 135 HFMSHNVVRPSVSNLQFQALSVTEGEGLIKPFSVD-EVKEAICDYDSFKSSGPDGVNFGF 193
F + N + + Q L L+ + + EV+ A+ K+ GPDG+ F
Sbjct: 180 LFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALF 239
Query: 194 IKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNK 253
++ W ++K D++ V+ F + G K +NTT I LI K + P R+ + RPISL K
Sbjct: 240 FQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYK 299
Query: 254 IIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEV---VDEAFKLKKDLMLFKV 310
+I+K+L RL+ V+ +++SETQSAFV R I D ILIA E+ + K M K
Sbjct: 300 VISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKT 359
Query: 311 DFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQ 370
D K YD V+W ++ +L+ M F W WI C+ T VL+NG P +RGLRQ
Sbjct: 360 DMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQ 419
Query: 371 GDPL 374
GDPL
Sbjct: 420 GDPL 423
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 182 bits (463), Expect = 1e-44
Identities = 105/306 (34%), Positives = 166/306 (53%), Gaps = 6/306 (1%)
Query: 75 ICWQQ-SRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRI-EGVEPVRNAIFTHF 132
I W+Q SRN W++EGD N+ +FH+ +R N + +++ + R+ G + + N F
Sbjct: 716 IYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFF 775
Query: 133 AQHFMSHNVVRPSVSNLQFQA-LSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNF 191
F ++ + + F++ ++ T L K FS E+ +AIC K+ GPDG+
Sbjct: 776 TNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTA 835
Query: 192 GFIKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSM 251
F K W ++ D++ V +F + IN T I +I K+ NP L+D+RPI+L +
Sbjct: 836 RFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVL 895
Query: 252 NKIIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDE---AFKLKKDLMLF 308
K+I+K L NRL+ + S+VS++Q+AF+ R I D ++IA+EV+ ++ K M
Sbjct: 896 YKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAV 955
Query: 309 KVDFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGL 368
K D K YD V+W +L ++ F W WI V + SVL+NGSP RG+
Sbjct: 956 KTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGI 1015
Query: 369 RQGDPL 374
RQGDPL
Sbjct: 1016 RQGDPL 1021
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 182 bits (463), Expect = 1e-44
Identities = 105/306 (34%), Positives = 166/306 (53%), Gaps = 6/306 (1%)
Query: 75 ICWQQ-SRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRI-EGVEPVRNAIFTHF 132
I W+Q SRN W++EGD N+ +FH+ +R N + +++ + R+ G + + N F
Sbjct: 490 IYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFF 549
Query: 133 AQHFMSHNVVRPSVSNLQFQA-LSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNF 191
F ++ + + F++ ++ T L K FS E+ +AIC K+ GPDG+
Sbjct: 550 TNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTA 609
Query: 192 GFIKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSM 251
F K W ++ D++ V +F + IN T I +I K+ NP L+D+RPI+L +
Sbjct: 610 RFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVL 669
Query: 252 NKIIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDE---AFKLKKDLMLF 308
K+I+K L NRL+ + S+VS++Q+AF+ R I D ++IA+EV+ ++ K M
Sbjct: 670 YKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAV 729
Query: 309 KVDFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGL 368
K D K YD V+W +L ++ F W WI V + SVL+NGSP RG+
Sbjct: 730 KTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGI 789
Query: 369 RQGDPL 374
RQGDPL
Sbjct: 790 RQGDPL 795
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 182 bits (461), Expect = 2e-44
Identities = 106/301 (35%), Positives = 163/301 (53%), Gaps = 5/301 (1%)
Query: 79 QSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFTHFAQHFMS 138
+SR+ W+ GD NSKFF + + + R N++ ++ E+ + V + I F + S
Sbjct: 68 KSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAVTFFEDLFS 127
Query: 139 HNVVRPSVSNLQFQALSVTE--GEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIKE 196
+ S L+ VTE + L K + E+ +A+ ++ + GPDG F +
Sbjct: 128 SSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDGFTALFFQR 187
Query: 197 FWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKIIA 256
W ++K+ I+ + F + G L + N T + LI K+ P R+ D RPISL M KII+
Sbjct: 188 QWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIIS 247
Query: 257 KLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEA---FKLKKDLMLFKVDFE 313
K+L+ RL+ + +VS TQSAFV +R + D I++A+E+V K+ KD M+FK D
Sbjct: 248 KILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMS 307
Query: 314 KTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLRQGDP 373
K YD V+W +L +L + F W W+ CV + + SVL+NG P RGLRQGDP
Sbjct: 308 KAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDP 367
Query: 374 L 374
L
Sbjct: 368 L 368
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 181 bits (458), Expect = 4e-44
Identities = 108/305 (35%), Positives = 160/305 (52%), Gaps = 11/305 (3%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFT-HFAQHF 136
Q+SR WLR G+ NSK+FH+ + R+ I + + ++ E + + +F F
Sbjct: 304 QKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLF 363
Query: 137 MSHNVVRPSVSNLQFQAL----SVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFG 192
S N PS F L S E L+ S E+KEA+ + GPDG++
Sbjct: 364 KSSN---PSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSAL 420
Query: 193 FIKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMN 252
F + +W + + + V +F +G + N T + LI K +P + D RPISL +
Sbjct: 421 FFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLY 480
Query: 253 KIIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAF---KLKKDLMLFK 309
KII+K++A RL+ + +VS+TQSAFV +R I D IL+A+E+V ++ + M K
Sbjct: 481 KIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVK 540
Query: 310 VDFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLR 369
D K YD V+W YL +L + F + W WI CV + T SVL+N P L+RGLR
Sbjct: 541 SDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLR 600
Query: 370 QGDPL 374
QGDPL
Sbjct: 601 QGDPL 605
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 181 bits (458), Expect = 4e-44
Identities = 108/305 (35%), Positives = 160/305 (52%), Gaps = 11/305 (3%)
Query: 78 QQSRNHWLREGDMNSKFFHSLMSSRRRFNTICSVLVEDVRIEGVEPVRNAIFT-HFAQHF 136
Q+SR WLR G+ NSK+FH+ + R+ I + + ++ E + + +F F
Sbjct: 301 QKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLF 360
Query: 137 MSHNVVRPSVSNLQFQAL----SVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFG 192
S N PS F L S E L+ S E+KEA+ + GPDG++
Sbjct: 361 KSSN---PSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSAL 417
Query: 193 FIKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMN 252
F + +W + + + V +F +G + N T + LI K +P + D RPISL +
Sbjct: 418 FFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLY 477
Query: 253 KIIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEVVDEAF---KLKKDLMLFK 309
KII+K++A RL+ + +VS+TQSAFV +R I D IL+A+E+V ++ + M K
Sbjct: 478 KIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVK 537
Query: 310 VDFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDEFPLKRGLR 369
D K YD V+W YL +L + F + W WI CV + T SVL+N P L+RGLR
Sbjct: 538 SDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLR 597
Query: 370 QGDPL 374
QGDPL
Sbjct: 598 QGDPL 602
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.333 0.145 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,013,582
Number of Sequences: 2540612
Number of extensions: 22662739
Number of successful extensions: 76197
Number of sequences better than 10.0: 877
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 74651
Number of HSP's gapped (non-prelim): 966
length of query: 374
length of database: 863,360,394
effective HSP length: 129
effective length of query: 245
effective length of database: 535,621,446
effective search space: 131227254270
effective search space used: 131227254270
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 76 (33.9 bits)
Medicago: description of AC137546.8