BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137081.4 - phase: 0
(325 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45752.1| pol protein [Cucumis melo] 352 8e-96
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 343 5e-93
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi... 328 2e-88
gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica ... 326 7e-88
emb|CAB46045.1| retrotransposon like protein [Arabidopsis thalia... 319 8e-86
gb|AAT66771.1| putative polyprotein [Solanum demissum] 318 1e-85
gb|AAV31169.1| putative polyprotein [Solanum tuberosum] 315 9e-85
gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum] g... 311 2e-83
gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum] 311 2e-83
gb|AAT39954.1| putative integrase [Solanum demissum] 311 2e-83
ref|XP_471220.1| OSJNBb0016B03.9 [Oryza sativa (japonica cultiva... 309 6e-83
gb|AAP52430.1| putative retroelement [Oryza sativa (japonica cul... 308 1e-82
gb|AAT85127.1| putative polyprotein [Oryza sativa (japonica cult... 308 1e-82
gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cult... 308 1e-82
gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cult... 308 2e-82
ref|XP_471545.1| OSJNBa0019J05.6 [Oryza sativa (japonica cultiva... 308 2e-82
gb|AAD37020.1| putative retroelement pol polyprotein [Arabidopsi... 307 2e-82
ref|XP_475728.1| putative polyprotein [Oryza sativa (japonica cu... 307 2e-82
emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa (japonica cultivar... 307 2e-82
gb|AAP52169.1| putative polyprotein [Oryza sativa (japonica cult... 307 3e-82
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 352 bits (903), Expect = 8e-96
Identities = 169/289 (58%), Positives = 215/289 (73%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD RFTS+FWK LQ A+G++L S+A+HPQTDGQ+ER Q LED+LR C LE
Sbjct: 633 PVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEF 692
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
G+ DSHL L+EF YNNSY ++IGMAPFEALYG CR+P+CW E GE ++GP+LV T
Sbjct: 693 PGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTN 752
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E ++ IR +M +QSRQKSY D RRKDLEF+ GD VFL+V P+ GV R + KL+P+F+
Sbjct: 753 EAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFV 812
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP++I ER+G VAYR+ LPP LS +HDVFHVS LRKYV DPSHV+ + +++ +NL+
Sbjct: 813 GPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE 872
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
P+ + R VK+LR K+IPLV+V+W E TWE E MR YPELF
Sbjct: 873 QPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 921
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 343 bits (879), Expect = 5e-93
Identities = 160/289 (55%), Positives = 222/289 (76%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SI+SDR +FT++FWKS Q LGSK+ LS+A+HPQTDGQ+ERTIQ+LED+LR CV++
Sbjct: 1307 PISIISDRGAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERTIQTLEDMLRACVIDF 1366
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
D HLPLIEF YNNSYHSSI MAP+EALYG RCR+P+ WFE GE+ ++GPDLVH+
Sbjct: 1367 KSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEVGEARLIGPDLVHQAM 1426
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
EKV++I+E++K +QSRQKSY D RR+ LEF+ D V+L+V+P+ GV R K KL+P++I
Sbjct: 1427 EKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYI 1486
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY+I +RVG+VAY + LP L+ +H VFH+S L+K + DPS ++P + V+++DNL+ E
Sbjct: 1487 GPYRIVQRVGSVAYELELPQELAAVHPVFHISMLKKCIGDPSLILPTESVKIKDNLSYEE 1546
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
+P++I +R+V+ LR K++ V+V+W E TWE E M++ YP LF
Sbjct: 1547 VPVQILDRQVRRLRTKDVASVKVLWRNQFVEEATWEAEEDMKKRYPHLF 1595
>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411368|pir||G84493 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1611
Score = 328 bits (840), Expect = 2e-88
Identities = 155/289 (53%), Positives = 211/289 (72%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD RFTS+FWK+ Q ALG+++ LS+AYHPQTD QSERTIQ+LED+LR CVL+
Sbjct: 1294 PVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDW 1353
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG + +L L+EF YNNS+ +SIGM+P+EALYG CRTPLCW GE + GP +V ETT
Sbjct: 1354 GGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETT 1413
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E+++ ++ K+K +Q RQKSY +KRRK+LEFQ GD V+L+ G GR +KL+P+++
Sbjct: 1414 ERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYV 1473
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY++ ERVG VAY++ LPP L+ H+VFHVSQLRK ++D + +++N+TVE
Sbjct: 1474 GPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVEA 1533
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
P+RI +R K RGK L++V+W E TWE E+KM+ ++PE F
Sbjct: 1534 WPVRIMDRMTKGTRGKARDLLKVLWNCRGREEYTWETENKMKANFPEWF 1582
>gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
Length = 552
Score = 326 bits (835), Expect = 7e-88
Identities = 156/289 (53%), Positives = 210/289 (71%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD +F S W+SLQ A+G+K+ LS+A+HPQTDGQSERTIQ+LED+LR CVL
Sbjct: 257 PKSIVSDRDSKFVSMLWQSLQRAMGTKISLSTAFHPQTDGQSERTIQTLEDMLRACVLSW 316
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
G + HL L+EF YNNSY +SI MAPFEALYG +C +PLCW GE +LGP++V +T+
Sbjct: 317 KGNWEDHLALVEFAYNNSYQASIKMAPFEALYGRKCVSPLCWESLGERALLGPEIVEQTS 376
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
+KV+ I + M A+QSRQKSY D RR+DLEF GD V LRV+P G+ R + KL+P++I
Sbjct: 377 KKVQEIGQNMLAAQSRQKSYADTRRRDLEFAVGDQVLLRVSPTKGIVRFGTTGKLSPRYI 436
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP+ I+ RVG++AYR+ LP ++ +HDVFHVS LRKY+ DP H I + + V +LT+E
Sbjct: 437 GPFVITARVGSLAYRLQLPESMNGVHDVFHVSMLRKYLRDPEHKIDLEPIMVEQDLTIEC 496
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
P+RI + + +R + I V+V+W + TWELE +M++ YPELF
Sbjct: 497 RPVRIFDWSERVMRRRTIKYVKVLWTNQSEREATWELEEEMKKKYPELF 545
>emb|CAB46045.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268441|emb|CAB80961.1| retrotransposon like protein
[Arabidopsis thaliana] gi|25407549|pir||F85188
retrotransposon like protein [imported] - Arabidopsis
thaliana
Length = 687
Score = 319 bits (817), Expect = 8e-86
Identities = 151/289 (52%), Positives = 208/289 (71%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD RFTS+FWK Q LG+++ LS+AYHPQTDGQSERTIQ+LED+LR CVL+
Sbjct: 378 PVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDW 437
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG + +L L+EF YNNS+ +SIGM+P+EALYG RTPLCW GE + GP +V ETT
Sbjct: 438 GGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPVGERRLFGPAVVDETT 497
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
+K++ ++ K+K +Q RQKSY +KRRK+LEFQ GD V+L+ G GR +KL P+++
Sbjct: 498 KKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRYV 557
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY++ ERVG VAY++ LPP L H+VFHVSQLRK +++ + +++N+TVE
Sbjct: 558 GPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCLSEQEESMEDVPPGLKENMTVEA 617
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
P+RI ++ K RGK + L++++W E TWE E+KM+ ++PE F
Sbjct: 618 WPVRIMDQMKKGTRGKSMDLLKILWNCGGREEYTWETETKMKANFPEWF 666
>gb|AAT66771.1| putative polyprotein [Solanum demissum]
Length = 1769
Score = 318 bits (815), Expect = 1e-85
Identities = 155/289 (53%), Positives = 206/289 (70%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SI+SDR +FTS FW++ Q+ LG+++ LS+++HPQTDGQSERTIQ LED+LR CV++
Sbjct: 1475 PVSIISDRGSQFTSSFWRAFQEELGTRVHLSTSFHPQTDGQSERTIQVLEDMLRACVMDF 1534
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG + LPL EF YNNSYHSSI MAPFEALYG RCR+P+ WFES E G DL+ E
Sbjct: 1535 GGQWEQFLPLAEFAYNNSYHSSIQMAPFEALYGRRCRSPVGWFESTEPRPRGTDLLQEAL 1594
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
++VR+I+++++ +QSR +SY D+RR+ L F GD VFLRV+P+ GV R + KL+P++I
Sbjct: 1595 DQVRVIQDRLRTAQSRHQSYADQRRRPLRFSVGDRVFLRVSPMKGVMRFGRRGKLSPRYI 1654
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP++I VG VAY + LPP S +H VFHVS LR+YV D SHV+ D V++ D LT
Sbjct: 1655 GPFEILRTVGEVAYELALPPVFSAIHPVFHVSMLRRYVPDESHVLQYDAVELDDRLTFVE 1714
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
P+ I R V+ LR + IP+V+V W E TWE E +MRE +P LF
Sbjct: 1715 EPVAILARDVRRLRSRAIPVVKVRWRHRPVEEATWETEQEMREQFPSLF 1763
>gb|AAV31169.1| putative polyprotein [Solanum tuberosum]
Length = 394
Score = 315 bits (808), Expect = 9e-85
Identities = 155/289 (53%), Positives = 206/289 (70%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SI+SDR +FTS F ++ Q+ LG+++ LS+A+HPQTDGQSERTIQ LED+LR CV++
Sbjct: 100 PVSIISDRGSQFTSSFLRAFQEELGTRVHLSTAFHPQTDGQSERTIQVLEDMLRACVMDF 159
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG D LPL EF YNNSYHSSI MAPFEALYG RC +P+ WFES E + G DL+ E
Sbjct: 160 GGQWDQFLPLAEFAYNNSYHSSIQMAPFEALYGRRCHSPVGWFESTEPRLRGTDLLQEAL 219
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
++VR+I+++++ +QSR +SY D+RR+ L F GD VFLRV+P+ GV R + KL+P++I
Sbjct: 220 DQVRVIQDRLRTAQSRHQSYADQRRRPLRFSVGDRVFLRVSPMKGVMRFGRRGKLSPRYI 279
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP++I VG VAY + LPP S +H VFHVS LR+YV D SHV+ D V++ D LT
Sbjct: 280 GPFEILRTVGEVAYELALPPVFSAIHPVFHVSMLRRYVPDESHVLQYDAVELDDRLTFVE 339
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
P+ I R V+ LR + IP+V+V W + E TWE E +MRE +P LF
Sbjct: 340 EPVAILARDVRRLRSRAIPVVKVRWRHCSVEEATWETEQEMREQFPGLF 388
>gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum]
gi|47825020|gb|AAT38791.1| putative gag-pol polyprotein
[Solanum demissum]
Length = 1351
Score = 311 bits (797), Expect = 2e-83
Identities = 144/266 (54%), Positives = 202/266 (75%)
Query: 59 LGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGASDSHLPLIEFTYNNSYHSSI 118
LGSK+ LS+A+HPQTDGQ+E TIQ LED+LR CV++ G D HLPLIEF YNNSYH SI
Sbjct: 1079 LGSKVNLSTAFHPQTDGQAEHTIQILEDMLRACVIDFKGNWDDHLPLIEFAYNNSYHPSI 1138
Query: 119 GMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETTEKVRMIREKMKASQSRQKSYHDK 178
MAP+EALYG RCR+P+ WFE GE+ ++GPDLVH+ EKV++I+E++K +QSRQKSY D
Sbjct: 1139 QMAPYEALYGRRCRSPIGWFEVGEAQLIGPDLVHQAMEKVKVIKERLKTAQSRQKSYTDV 1198
Query: 179 RRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISERVGTVAYRVGLPPHLS 238
RR+ LEF+ D V+L+V+P+ GV R K KL+P++IGPY+I++R+G VAY + LP L+
Sbjct: 1199 RRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELA 1258
Query: 239 NLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETMPLRIDNRKVKSLRGKEIPLVRV 298
+H VFH+S L+K + DPS ++P + +++ DNL+ E +P++I +R+V+ LR K++ V+V
Sbjct: 1259 AVHPVFHISMLKKCIGDPSLILPTESIKINDNLSYEEVPVQILDRQVRRLRTKDVASVKV 1318
Query: 299 VWGGATGESLTWELESKMRESYPELF 324
+W E TWE E M++ YP LF
Sbjct: 1319 LWRDQFVEEATWEAEEDMKKKYPYLF 1344
>gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1351
Score = 311 bits (797), Expect = 2e-83
Identities = 144/266 (54%), Positives = 202/266 (75%)
Query: 59 LGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGASDSHLPLIEFTYNNSYHSSI 118
LGSK+ LS+A+HPQTDGQ+E TIQ LED+LR CV++ G D HLPLIEF YNNSYH SI
Sbjct: 1079 LGSKVNLSTAFHPQTDGQAEHTIQILEDMLRACVIDFKGNWDDHLPLIEFAYNNSYHPSI 1138
Query: 119 GMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETTEKVRMIREKMKASQSRQKSYHDK 178
MAP+EALYG RCR+P+ WFE GE+ ++GPDLVH+ EKV++I+E++K +QSRQKSY D
Sbjct: 1139 QMAPYEALYGRRCRSPIGWFEVGEAQLIGPDLVHQAMEKVKVIKERLKTAQSRQKSYTDV 1198
Query: 179 RRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISERVGTVAYRVGLPPHLS 238
RR+ LEF+ D V+L+V+P+ GV R K KL+P++IGPY+I++R+G VAY + LP L+
Sbjct: 1199 RRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELA 1258
Query: 239 NLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETMPLRIDNRKVKSLRGKEIPLVRV 298
+H VFH+S L+K + DPS ++P + +++ DNL+ E +P++I +R+V+ LR K++ V+V
Sbjct: 1259 AVHPVFHISMLKKCIGDPSLILPTESIKINDNLSYEEVPVQILDRQVRRLRTKDVASVKV 1318
Query: 299 VWGGATGESLTWELESKMRESYPELF 324
+W E TWE E M++ YP LF
Sbjct: 1319 LWRDQFVEEATWEAEEDMKKKYPYLF 1344
>gb|AAT39954.1| putative integrase [Solanum demissum]
Length = 1609
Score = 311 bits (796), Expect = 2e-83
Identities = 152/289 (52%), Positives = 203/289 (69%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SI+SDR FTS FW++ QD LG+++ LS+ +HPQTDGQSERTIQ LED+L+ CV++
Sbjct: 1174 PVSIISDRGSPFTSSFWRTFQDDLGTRVDLSTTFHPQTDGQSERTIQVLEDMLQACVMDF 1233
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG D LPL EF YNN+Y+SSI MAPFEALYG RCR+P+ WFES E+ G DL+ E
Sbjct: 1234 GGQWDQFLPLAEFAYNNNYYSSIQMAPFEALYGRRCRSPVGWFESTEARPRGTDLLQEAL 1293
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
++VR+I+++++ +QSR ++Y D+RR+ L F GD VF RV+P+ GV R + KL+P++I
Sbjct: 1294 DQVRVIQDRLRMAQSRHQNYADRRRRPLRFSVGDRVFFRVSPMKGVMRFGRRDKLSPRYI 1353
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP++I VG VAY + LPP S +H VFHV LR+YV D SHV+ D V++ D LT
Sbjct: 1354 GPFEILRTVGEVAYELALPPAFSAIHPVFHVPMLRRYVPDESHVLQYDAVELDDRLTFVE 1413
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 324
P+ I R VK LR + IP+V+V W E TWE E +MRE +P LF
Sbjct: 1414 EPIAILARDVKRLRSRAIPVVKVHWRHRPVEEATWETEQEMREQFPVLF 1462
>ref|XP_471220.1| OSJNBb0016B03.9 [Oryza sativa (japonica cultivar-group)]
gi|38347553|emb|CAD39388.2| OSJNBb0016B03.9 [Oryza sativa
(japonica cultivar-group)]
Length = 1092
Score = 309 bits (792), Expect = 6e-83
Identities = 151/290 (52%), Positives = 199/290 (68%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P IVSDR +FTS FWK LQ+ LG++L S+AYHPQTDGQ+ER Q LED+LR CVL+
Sbjct: 792 PKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLDF 851
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
G D LP EF+YNNSY +SI MAP+EALYG +CRTPL W + GES V GPD++ E
Sbjct: 852 GKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGPDILREAE 911
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
KVR+IR+ +K +QSRQKSY D RR+DLEF GD V+LRVTPL GV R KL P+++
Sbjct: 912 AKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYV 971
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP++I R G VAY++ LP L N+HDVFHVSQL+K + PS + ++VR++LT
Sbjct: 972 GPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLTYAE 1031
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
P++I + + R + I +V W E TWE E +++ ++P+LFA
Sbjct: 1032 RPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLFA 1081
>gb|AAP52430.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531682|ref|NP_920143.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671933|gb|AAM74295.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 518
Score = 308 bits (790), Expect = 1e-82
Identities = 145/290 (50%), Positives = 205/290 (70%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P IVSDR +FTS+FW+ LQ LG++L S+AYHPQTDGQ+ER Q LED+LR CVL+
Sbjct: 218 PKKIVSDRGSQFTSKFWQKLQLELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACVLDF 277
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG+ D +LP EF+YNNSY +S+ MAP+EALYG +CRTPL W ++GE V G D++ +
Sbjct: 278 GGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILRQAE 337
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
EKV++I+E+++ +QSRQKSY D RR+DL F+EGD+V+LRVTPL GV R KL P+F+
Sbjct: 338 EKVKIIQERLRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFV 397
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GP++I R G VAY++ LPP ++ +HDVFHVSQL+K + P+ D ++++++LT
Sbjct: 398 GPFKIVSRRGEVAYQLELPPSMAGIHDVFHVSQLKKCLRVPTEEADPDRIELQEDLTYVE 457
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
P+RI + R + I +V W + E TWE E +++ ++P LFA
Sbjct: 458 KPVRILEESERKTRNRVIRFCKVQWSNHSEEEATWEREDELKSAHPHLFA 507
>gb|AAT85127.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1524
Score = 308 bits (790), Expect = 1e-82
Identities = 148/290 (51%), Positives = 202/290 (69%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P IVSDR +FTS+FW+ LQ+ LG++L S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1224 PKKIVSDRGSQFTSKFWQKLQEELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 1283
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GGA D LP EF+YNNSY +S+ MAPFEALYG RCRTPL W ++GE + G ++++E
Sbjct: 1284 GGAWDKSLPYAEFSYNNSYQASLQMAPFEALYGRRCRTPLFWDQTGERQLFGTEVLNEAE 1343
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
EKVR +RE+++ +QSRQKSY D RR++L F+ GD+V+LRVTPL GV R K KL P+F+
Sbjct: 1344 EKVRAVRERLRIAQSRQKSYADNRRRELAFETGDYVYLRVTPLRGVHRFQKKGKLAPRFV 1403
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY+I ER G VAY++ LP ++ +H+VFHVSQL+K + P D ++++++LT
Sbjct: 1404 GPYRILERRGEVAYQLELPSNMLGIHNVFHVSQLKKCLRVPEEQASPDHIEIQEDLTYVE 1463
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
P RI + R K I +V W T E TWE E +++ ++P LFA
Sbjct: 1464 KPTRILETNERRTRNKVIRFCKVQWSHHTEEEATWEREDELKATHPHLFA 1513
>gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531782|ref|NP_920193.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657010|gb|AAL78097.1| Putative polyprotein [Oryza
sativa]
Length = 1473
Score = 308 bits (789), Expect = 1e-82
Identities = 147/290 (50%), Positives = 202/290 (68%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P IVSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1173 PKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 1232
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG+ D +LP EF+YNNSY +S+ MAP+EALYG +CRTPL W ++GE V G D++ E
Sbjct: 1233 GGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAE 1292
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
EKV++I+E+++ +QSR KSY D RR+DL F+EGD+V+LRVTPL GV R KL P+F+
Sbjct: 1293 EKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFV 1352
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY+I R G VAY++ LP L+ +HDVFHVSQL+K + P+ + ++V+++LT
Sbjct: 1353 GPYKIVSRRGEVAYQLELPQSLAGVHDVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVE 1412
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
P+RI + R + I +V W + E TWE E +++ ++P LFA
Sbjct: 1413 KPIRILETSERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLFA 1462
>gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532218|ref|NP_920411.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225021|gb|AAL86497.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 308 bits (788), Expect = 2e-82
Identities = 147/290 (50%), Positives = 202/290 (68%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P IVSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1422 PKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 1481
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG+ D +LP EF+YNNSY +S+ MAP+EALYG +CRTPL W ++GE V G D++ E
Sbjct: 1482 GGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAK 1541
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
EKV++I+E+++ +QSR KSY D RR+DL F+EGD+V+LRVTPL GV R KL P+F+
Sbjct: 1542 EKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFV 1601
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY+I R G VAY++ LP L+ +H+VFHVSQL+K + P + ++V+++LT
Sbjct: 1602 GPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPIEEANLEQIEVQEDLTYVE 1661
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
P+RI + R + I +V WG + E TWE E +++ ++P LFA
Sbjct: 1662 KPIRIMEIDERKTRNRVIRFCKVQWGNHSEEESTWEREDELKSAHPHLFA 1711
>ref|XP_471545.1| OSJNBa0019J05.6 [Oryza sativa (japonica cultivar-group)]
gi|38346421|emb|CAD40208.2| OSJNBa0019J05.6 [Oryza sativa
(japonica cultivar-group)]
Length = 1616
Score = 308 bits (788), Expect = 2e-82
Identities = 146/290 (50%), Positives = 203/290 (69%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P IVSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1316 PKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 1375
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG+ D +LP EF+YNNSY +S+ MAP+EALYG +CRTPL W ++GE V G D++ E
Sbjct: 1376 GGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAE 1435
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
EKV++I+E+++ +QSR KSY D RR+DL F+EGD+V+LRVTPL GV R KL P+F+
Sbjct: 1436 EKVKVIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFV 1495
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY+I+ R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT
Sbjct: 1496 GPYKIASRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVE 1555
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
P+RI + R + I +V W + E TWE E +++ ++P LFA
Sbjct: 1556 KPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFA 1605
>gb|AAD37020.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411315|pir||D84487 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 949
Score = 307 bits (787), Expect = 2e-82
Identities = 146/264 (55%), Positives = 197/264 (74%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P SIVSDRD RFTS+FW + Q ALG+++ LS+AYHPQTDGQSERTIQ+LED+LR CVL+
Sbjct: 686 PVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDW 745
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG + +L LIEF YNNS+ +SIGM+P+EALYG CRTPLCW GE + GP +V ETT
Sbjct: 746 GGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETT 805
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
E+++ ++ K+K +Q RQKSY +KRRK+LEFQ GD V+L+ G GR +KL+P+++
Sbjct: 806 ERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYV 865
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY++ ERVG VAY++ LPP L+ H+VFHVSQLRKY++D + +++N+TVE
Sbjct: 866 GPYKVIERVGAVAYKLDLPPKLNVFHNVFHVSQLRKYLSDQEESVEDIPPGLKENMTVEA 925
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVV 299
P+RI +R K RGK L++V+
Sbjct: 926 WPVRIMDRMSKGTRGKSRDLLKVL 949
>ref|XP_475728.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50080333|gb|AAT69667.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 307 bits (787), Expect = 2e-82
Identities = 145/290 (50%), Positives = 202/290 (69%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P IVSDR +FTS+FW+ LQ+ LG++L S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1224 PKKIVSDRGSQFTSKFWQKLQEELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 1283
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GGA D LP EF+YNNSY +S+ MAPFEALYG RCRTPL W+++GE + G ++++E
Sbjct: 1284 GGAWDKSLPYAEFSYNNSYQASLQMAPFEALYGRRCRTPLFWYQTGERQLFGTEVLNEAE 1343
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
EKVR +RE+++ +QSRQKSY D RR++L F+ GD+V+LRVTPL GV R KL P+F+
Sbjct: 1344 EKVRAVRERLRIAQSRQKSYADNRRRELAFETGDYVYLRVTPLRGVHRFQTKGKLAPRFV 1403
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY++ ER G VAY++ LP ++ +H+VFHVSQL+K + P D ++++++LT
Sbjct: 1404 GPYRVLERRGEVAYQLELPSNMLGIHNVFHVSQLKKCLRVPEEQASPDQIEIQEDLTYVE 1463
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
P RI + R K I +V W + E TWE E +++ ++P LFA
Sbjct: 1464 KPTRILETSERKTRNKVIRFCKVQWSHHSEEEATWEREDELKATHPHLFA 1513
>emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa (japonica cultivar-group)]
Length = 1528
Score = 307 bits (787), Expect = 2e-82
Identities = 146/290 (50%), Positives = 202/290 (69%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P IVSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1228 PKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 1287
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG+ D +LP EF+YNNSY +S+ MAP+EALYG +CRTPL W ++GE V G D++ E
Sbjct: 1288 GGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAE 1347
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
EKV++I+E+++ +QSR KSY D RR+DL F+EGD+V+LRVTPL GV R KL P+F+
Sbjct: 1348 EKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFV 1407
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY+I R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT
Sbjct: 1408 GPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVE 1467
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
P+RI + R + I +V W + E TWE E +++ ++P LFA
Sbjct: 1468 KPIRILETNERKTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFA 1517
>gb|AAP52169.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531160|ref|NP_919882.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22725919|gb|AAN04929.1| Putative polyprotein [Oryza
sativa] gi|20177624|gb|AAM14679.1| Putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1022
Score = 307 bits (786), Expect = 3e-82
Identities = 146/290 (50%), Positives = 203/290 (69%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P IVSDR +FTS FWK LQ+ +GSKL S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 722 PKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 781
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
GG+ D +LP EF+YNNSY +S+ MAP+EALYG +CRTPL W ++GE V G D++ E
Sbjct: 782 GGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQAGERQVFGTDILREAE 841
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFI 215
EKV++I+E+++ +QSR KSY D RR+DL F+EGD+V+LRVTPL GV R + KL P+F+
Sbjct: 842 EKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTNGKLAPRFV 901
Query: 216 GPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVET 275
GPY+I R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT
Sbjct: 902 GPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANHEQIEVQEDLTYVE 961
Query: 276 MPLRIDNRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELFA 325
P+RI + R + I +V W + E TWE E +++ ++P LFA
Sbjct: 962 KPIRILEIDERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFA 1011
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,106,080
Number of Sequences: 2540612
Number of extensions: 19915984
Number of successful extensions: 52060
Number of sequences better than 10.0: 1603
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 279
Number of HSP's that attempted gapping in prelim test: 49794
Number of HSP's gapped (non-prelim): 1763
length of query: 325
length of database: 863,360,394
effective HSP length: 128
effective length of query: 197
effective length of database: 538,162,058
effective search space: 106017925426
effective search space used: 106017925426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)
Medicago: description of AC137081.4