BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136973.1 - phase: 0 /pseudo
(381 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 195 2e-48
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 189 9e-47
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 188 3e-46
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 186 1e-45
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 181 3e-44
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 179 2e-43
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 175 2e-42
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 175 2e-42
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 174 3e-42
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 173 9e-42
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 173 9e-42
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 171 3e-41
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 171 4e-41
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 168 3e-40
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 168 3e-40
gb|AAX94970.1| retrotransposon protein, putative, unclassified [... 166 8e-40
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 166 1e-39
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 166 1e-39
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 165 2e-39
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 165 2e-39
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 195 bits (495), Expect = 2e-48
Identities = 91/202 (45%), Positives = 132/202 (65%), Gaps = 2/202 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP VGRS+ FS++K+R+WQ+I W K LS+AG+E++IK V Q IP++ M F
Sbjct: 950 KYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCF 1009
Query: 61 RLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
L+ L D+I +M+ +WW + N+ ++WLSW KL++ KN GG+GF+D FN+AML
Sbjct: 1010 ELTKDLCDQISKMIAKYWWSNQEKDNK-MHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLA 1068
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQGW+L PDSL S++ +A+Y+P + K N S+ WRSI V++ G W++G
Sbjct: 1069 KQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVG 1128
Query: 180 AGFDIPIISEPWIGSGSSIPPV 201
G I I ++PWI G S P+
Sbjct: 1129 DGSKINIWADPWIPRGWSRKPM 1150
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 189 bits (481), Expect = 9e-47
Identities = 92/203 (45%), Positives = 134/203 (65%), Gaps = 2/203 (0%)
Query: 2 YLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFR 61
YLGLP +G SK FSF++DR+ +I+ WS+K LSK G+EVMIK V+ +P+YVMS FR
Sbjct: 600 YLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFR 659
Query: 62 LSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
L T+ ++ + FWW G S RG++W++W KL K DGG+GF+ FN A+L K
Sbjct: 660 LPKTITSKLTSAVAKFWWSSDGES-RGMHWMAWNKLCSSKADGGLGFRSVNDFNSALLAK 718
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W+L T PDSL +K+FK RY+ SN LD ++PS+ WRSI+SA+ +V++G ++G+
Sbjct: 719 QLWRLITVPDSLFAKVFKGRYFRKSNPLDKLKSYSPSYGWRSIISARSLVKKGLINRVGS 778
Query: 181 GFDIPIISEPWIGSGSSIPPVGD 203
G I + +PWI + P + +
Sbjct: 779 GASISVWEDPWIPAQFPRPAISN 801
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 188 bits (477), Expect = 3e-46
Identities = 89/192 (46%), Positives = 131/192 (67%), Gaps = 2/192 (1%)
Query: 2 YLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFR 61
YLGLP +G SK FSF++DR+ +I+ WS+K LSK G+EVMIK V +P YVMS FR
Sbjct: 534 YLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFR 593
Query: 62 LSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
L + ++ + FWW G S RG++W++W+KL K+DGG+GF++ FN A+L K
Sbjct: 594 LPKAITSKLTSAVAKFWWSSNGDS-RGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAK 652
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W+L T PDSL +K+FK RY+ SN LD+ ++PS+ WRS++SA+ +V +G ++G+
Sbjct: 653 QLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGS 712
Query: 181 GFDIPIISEPWI 192
G I + ++PWI
Sbjct: 713 GASISVWNDPWI 724
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 186 bits (472), Expect = 1e-45
Identities = 90/194 (46%), Positives = 132/194 (67%), Gaps = 2/194 (1%)
Query: 2 YLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFR 61
YLGLP SK AT S++KDR+ +K+ W S LS G+E+++K V A+P+Y MS F+
Sbjct: 750 YLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFK 809
Query: 62 LSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
+ T+ +IE +M FWW + RGL+W +W LS K GG+GFK+ AFN+A+LGK
Sbjct: 810 IPKTICQQIESVMAEFWWKNK-KEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGK 868
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W++ T+ DSL++K+FK+RY+ S+ L+A LG PSF W+SI A+V+++QG R IG
Sbjct: 869 QLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGN 928
Query: 181 GFDIPIISEPWIGS 194
G I + ++PWIG+
Sbjct: 929 GETINVWTDPWIGA 942
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 181 bits (459), Expect = 3e-44
Identities = 83/192 (43%), Positives = 127/192 (65%), Gaps = 2/192 (1%)
Query: 2 YLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFR 61
YLG+P+ +G + F F+ +R+W++++ W+ + LS+AG E M+K V QAIP+YVMS FR
Sbjct: 765 YLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFR 824
Query: 62 LSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
+ ++ ++++ + WWG + ++W SW LS K GGMGF++F FN AMLG+
Sbjct: 825 IPVSICEKMKTCIADHWWGFEDGKKK-MHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGR 883
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W+L T PDSL S++ K RY+PNS+F +A +PSF WRS+L + ++ +G RW +G
Sbjct: 884 QCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGD 943
Query: 181 GFDIPIISEPWI 192
G I I S+ WI
Sbjct: 944 GKTIKIFSDNWI 955
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 179 bits (453), Expect = 2e-43
Identities = 80/199 (40%), Positives = 126/199 (63%), Gaps = 2/199 (1%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP+ GR K F I D++ +++S W+ K +S +EV+IK V QA+P+Y+M +F
Sbjct: 661 KYLGLPTPDGRMKAEQFQPINDKLSKRMSDWNEKYMSSGAKEVLIKSVAQALPTYIMGVF 720
Query: 61 RLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
++++ D+ M+ +FWWGH + R ++W++WEK+ K+ GG+GF+D FN A+L
Sbjct: 721 KMTDKFCDDYTRMVRNFWWGHD-NGERKVHWIAWEKILYPKSHGGLGFRDMKCFNQALLA 779
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
+Q W+L T PDSL +++FKA+YYPN N +D S VW+ I +++QG W++G
Sbjct: 780 RQAWRLLTSPDSLCARVFKAKYYPNGNLVDTAFPTVSSSVWKGIQHGLDLLKQGTIWRVG 839
Query: 180 AGFDIPIISEPWIGSGSSI 198
G +I I W+ G I
Sbjct: 840 NGHNIKIWRHKWVPHGEHI 858
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 175 bits (443), Expect = 2e-42
Identities = 83/202 (41%), Positives = 125/202 (61%), Gaps = 2/202 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLG P+ GR K F +++R+W++I W K LS G+E++IK VLQA+P YVM +F
Sbjct: 1362 KYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLF 1421
Query: 61 RLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ +E+ +++ +FWWG R +W SW+ L K GGMGF+DF FN A+L
Sbjct: 1422 KLPESVCEELTKLVRNFWWG-AEKGMRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLA 1480
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
+Q W+L +PDSL ++I KA YYPN + +D G N S WR+I ++++G W+IG
Sbjct: 1481 RQAWRLLDRPDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIG 1540
Query: 180 AGFDIPIISEPWIGSGSSIPPV 201
G + + +PWI S P+
Sbjct: 1541 NGKSVRLWRDPWIPRSYSRRPI 1562
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 175 bits (443), Expect = 2e-42
Identities = 83/202 (41%), Positives = 125/202 (61%), Gaps = 2/202 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLG P+ GR K F +++R+W++I W K LS G+E++IK VLQA+P YVM +F
Sbjct: 1319 KYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLF 1378
Query: 61 RLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ +E+ +++ +FWWG R +W SW+ L K GGMGF+DF FN A+L
Sbjct: 1379 KLPESVCEELTKLVRNFWWG-AEKGMRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLA 1437
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
+Q W+L +PDSL ++I KA YYPN + +D G N S WR+I ++++G W+IG
Sbjct: 1438 RQAWRLLDRPDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIG 1497
Query: 180 AGFDIPIISEPWIGSGSSIPPV 201
G + + +PWI S P+
Sbjct: 1498 NGKSVRLWRDPWIPRSYSRRPI 1519
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 174 bits (442), Expect = 3e-42
Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 2/202 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP+ GR K F +++R+W+KI W LS G+EV+IK V+QAIP YVM IF
Sbjct: 1118 KYLGLPTPGGRMHKGRFQSLRERIWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIF 1177
Query: 61 RLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ +++ + +FWWG R +W +W+ L+ K+ GG+GFKD FN A+L
Sbjct: 1178 KLPESVCEDLTSLTRNFWWG-AEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLA 1236
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
+Q W+L PDSL +++ KA+YYPN + +D G N S W++I +V++G W+IG
Sbjct: 1237 RQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIG 1296
Query: 180 AGFDIPIISEPWIGSGSSIPPV 201
G + + +PW+ S P+
Sbjct: 1297 NGRSVRVWQDPWLPRDLSRRPI 1318
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 173 bits (438), Expect = 9e-42
Identities = 82/202 (40%), Positives = 129/202 (63%), Gaps = 2/202 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP + SK+ F FIK+++ +++ W +K LS+ G+EV++K + A+P YVMS F
Sbjct: 727 KYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCF 786
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L L ++ +M FWW + R ++WLSW++L++ K+ GG GFKD FN A+L
Sbjct: 787 KLPKNLCQKLTTVMMDFWW-NSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLA 845
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W++ + SL S++F++RY+ NS+FL A G PS+ WRSIL + ++ QG R IG
Sbjct: 846 KQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIG 905
Query: 180 AGFDIPIISEPWIGSGSSIPPV 201
G + ++ W+ GS+ P+
Sbjct: 906 NGQKTFVWTDKWLHDGSNRRPL 927
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 173 bits (438), Expect = 9e-42
Identities = 82/202 (40%), Positives = 129/202 (63%), Gaps = 2/202 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP + SK+ F FIK+++ +++ W +K LS+ G+EV++K + A+P YVMS F
Sbjct: 748 KYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCF 807
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L L ++ +M FWW + R ++WLSW++L++ K+ GG GFKD FN A+L
Sbjct: 808 KLPKNLCQKLTTVMMDFWW-NSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLA 866
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W++ + SL S++F++RY+ NS+FL A G PS+ WRSIL + ++ QG R IG
Sbjct: 867 KQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIG 926
Query: 180 AGFDIPIISEPWIGSGSSIPPV 201
G + ++ W+ GS+ P+
Sbjct: 927 NGQKTFVWTDKWLHDGSNRRPL 948
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 171 bits (434), Expect = 3e-41
Identities = 79/202 (39%), Positives = 125/202 (61%), Gaps = 2/202 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
+YLG P+ GR K F +++R+W+++ W LS G+EV+IK V+Q IP YVM IF
Sbjct: 260 RYLGFPTPEGRMCKGKFQSLQERIWKRLIIWGENLLSSGGKEVLIKSVIQTIPVYVMGIF 319
Query: 61 RLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
L ++ +E+ ++ +FWWG R +W SWE L+ K++GG+GF+DF FN A+L
Sbjct: 320 NLPESVCEELTKLTRNFWWGVE-KGKRKTHWKSWECLTRPKSNGGLGFRDFRLFNQALLA 378
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
+Q W+L PDSL +++ KA+Y+PN + +D G N S VW++I ++++G W+IG
Sbjct: 379 RQAWRLIVNPDSLCARVLKAKYFPNGSLVDTSFGGNASPVWKAIEYGLSLLKEGIIWRIG 438
Query: 180 AGFDIPIISEPWIGSGSSIPPV 201
G + I +PW+ S P+
Sbjct: 439 NGKSVRIWRDPWLPRDFSRRPI 460
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 171 bits (432), Expect = 4e-41
Identities = 83/205 (40%), Positives = 132/205 (63%), Gaps = 2/205 (0%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP GR KK F++I DRV ++ +SWS+K LS AG+E+++K V A+P Y MS F
Sbjct: 370 KYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCF 429
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ EIE ++ +FWW S+ RG+ W++W++L K +GG+GF+D FN A+L
Sbjct: 430 KLPQGIVSEIESLLMNFWW-EKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLA 488
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W++ P+SL +++ KARY+ +++ +DAK S+ W S+LS ++R+G R+ IG
Sbjct: 489 KQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIG 548
Query: 180 AGFDIPIISEPWIGSGSSIPPVGDD 204
G I + + + S P + D+
Sbjct: 549 DGKTIRLGIDNVVDSHPPRPLLTDE 573
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 168 bits (425), Expect = 3e-40
Identities = 81/187 (43%), Positives = 123/187 (65%), Gaps = 2/187 (1%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP GR KK F +I DRV ++ S+WS++ LS AG+E+M+K V A+P Y MS F
Sbjct: 1131 KYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCF 1190
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ EIE ++ +FWW S+ RG+ W++W++L K +GG+GF+D FN A+L
Sbjct: 1191 KLPKGIVSEIESLLMNFWW-EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLA 1249
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W+L P+SL +++ KARY+ + + LDAK+ S+ W S+L ++++G R IG
Sbjct: 1250 KQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIG 1309
Query: 180 AGFDIPI 186
G +I I
Sbjct: 1310 DGQNIRI 1316
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 168 bits (425), Expect = 3e-40
Identities = 81/187 (43%), Positives = 123/187 (65%), Gaps = 2/187 (1%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP GR KK F +I DRV ++ S+WS++ LS AG+E+M+K V A+P Y MS F
Sbjct: 905 KYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCF 964
Query: 61 RLSNTLLDEIE-MMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L ++ EIE ++ +FWW S+ RG+ W++W++L K +GG+GF+D FN A+L
Sbjct: 965 KLPKGIVSEIESLLMNFWW-EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLA 1023
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
KQ W+L P+SL +++ KARY+ + + LDAK+ S+ W S+L ++++G R IG
Sbjct: 1024 KQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIG 1083
Query: 180 AGFDIPI 186
G +I I
Sbjct: 1084 DGQNIRI 1090
>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 816
Score = 166 bits (421), Expect = 8e-40
Identities = 80/193 (41%), Positives = 122/193 (62%), Gaps = 2/193 (1%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
KYLGLP+ GR K + ++ DR+ +++S W+ K LS G+EV+IK V+QA+P+YVM++F
Sbjct: 19 KYLGLPTPSGRMKAGKYQYLMDRLMKRLSDWAEKFLSMGGKEVLIKSVIQALPTYVMNVF 78
Query: 61 RL-SNTLLDEIEMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLG 119
+L S D ++M+ FWWG + R +W SW++L K+ GG+GFKD FN A+L
Sbjct: 79 KLPSGFCEDYMKMIRKFWWGE-EKNRRKTHWTSWQQLIKPKSKGGIGFKDLKIFNQALLA 137
Query: 120 KQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIG 179
+Q W+L DSL +K+ KARY+PN + +D + S VWR I ++++G W+IG
Sbjct: 138 RQAWRLIQFLDSLCAKLMKARYFPNGHLIDTVFPTDSSEVWRGICHGLELLKKGIIWRIG 197
Query: 180 AGFDIPIISEPWI 192
G + I + WI
Sbjct: 198 KGDQLHIWRDNWI 210
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 166 bits (419), Expect = 1e-39
Identities = 80/192 (41%), Positives = 123/192 (63%), Gaps = 2/192 (1%)
Query: 2 YLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFR 61
YLGLP SK ++KDR+ +K+ W ++CLS+ G+EV++K V A+P + MS F+
Sbjct: 716 YLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFK 775
Query: 62 LSNTLLDEIEM-MNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
L T + +E M SFWW S R ++W SWE+L + K+ GG+GF+D +FN A+L K
Sbjct: 776 LPITTCENLESAMASFWWDSCDHS-RKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAK 834
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W+L PD L+S++ K+RY+ ++FLDA L PSF WRSIL + ++ +G + ++G
Sbjct: 835 QAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGD 894
Query: 181 GFDIPIISEPWI 192
G + + +PWI
Sbjct: 895 GASLFVWIDPWI 906
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 166 bits (419), Expect = 1e-39
Identities = 80/192 (41%), Positives = 123/192 (63%), Gaps = 2/192 (1%)
Query: 2 YLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIFR 61
YLGLP SK ++KDR+ +K+ W ++CLS+ G+EV++K V A+P + MS F+
Sbjct: 713 YLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFK 772
Query: 62 LSNTLLDEIEM-MNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
L T + +E M SFWW S R ++W SWE+L + K+ GG+GF+D +FN A+L K
Sbjct: 773 LPITTCENLESAMASFWWDSCDHS-RKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAK 831
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W+L PD L+S++ K+RY+ ++FLDA L PSF WRSIL + ++ +G + ++G
Sbjct: 832 QAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGD 891
Query: 181 GFDIPIISEPWI 192
G + + +PWI
Sbjct: 892 GASLFVWIDPWI 903
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 165 bits (418), Expect = 2e-39
Identities = 73/201 (36%), Positives = 122/201 (60%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
+YLG P+ GR K F ++ ++W+++ W LS G+EV+IK V+QAIP YVM IF
Sbjct: 1483 RYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIF 1542
Query: 61 RLSNTLLDEIEMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
+L +++D++ + +W + R +W +W+ L+ K+ GG+GF+D+ FN A+L +
Sbjct: 1543 KLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLAR 1602
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W+L T PDSL +++ KA+Y+P+ + +D G N S WRSI ++++G W++G
Sbjct: 1603 QAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGN 1662
Query: 181 GFDIPIISEPWIGSGSSIPPV 201
G I I + W+ S P+
Sbjct: 1663 GNSIRIWRDSWLPRDHSRRPI 1683
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 165 bits (418), Expect = 2e-39
Identities = 73/201 (36%), Positives = 122/201 (60%)
Query: 1 KYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKYVLQAIPSYVMSIF 60
+YL P+ GR K F ++ ++W+++ W LS G+EV+IK V+QAIP YVM IF
Sbjct: 159 RYLEFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIF 218
Query: 61 RLSNTLLDEIEMMNSFWWGHGGSSNRGLNWLSWEKLSVHKNDGGMGFKDFVAFNVAMLGK 120
+L +++D++ + +W + R +W +W+ L+ K+ GG+GF+D+ FN A+L +
Sbjct: 219 KLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYWLFNQALLAR 278
Query: 121 QGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKVVVRQGARWKIGA 180
Q W+L T PDSL +++ KA+Y+P+ + +D G N S WRSI ++++G W++G
Sbjct: 279 QAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGN 338
Query: 181 GFDIPIISEPWIGSGSSIPPV 201
G I I +PW+ S P+
Sbjct: 339 GNSIRIWRDPWLPRDHSRRPI 359
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.339 0.148 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,362,739
Number of Sequences: 2540612
Number of extensions: 25764442
Number of successful extensions: 67371
Number of sequences better than 10.0: 226
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 67031
Number of HSP's gapped (non-prelim): 256
length of query: 381
length of database: 863,360,394
effective HSP length: 130
effective length of query: 251
effective length of database: 533,080,834
effective search space: 133803289334
effective search space used: 133803289334
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 76 (33.9 bits)
Medicago: description of AC136973.1