BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136954.7 - phase: 0
(396 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [... 150 7e-35
gb|AAX95471.1| Retrotransposon gag protein, putative [Oryza sati... 145 2e-33
gb|AAX95470.1| Retrotransposon gag protein, putative [Oryza sati... 145 2e-33
ref|XP_471549.1| OSJNBa0019J05.10 [Oryza sativa (japonica cultiv... 142 2e-32
ref|NP_914622.1| similar to polyprotein [Oryza sativa (japonica ... 142 2e-32
gb|AAO45751.1| gag-protease polyprotein [Cucumis melo] 140 7e-32
gb|AAV43991.1| putative polyprotein [Oryza sativa (japonica cult... 137 8e-31
gb|AAP52849.1| putative retroelement [Oryza sativa (japonica cul... 135 2e-30
emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa (japonica cultivar... 135 2e-30
gb|AAT47449.1| putative polyprotein [Oryza sativa (japonica cult... 134 4e-30
gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cul... 134 5e-30
emb|CAE02186.2| OSJNBa0080E14.17 [Oryza sativa (japonica cultiva... 134 5e-30
gb|AAT73646.1| putative polyprotein [Oryza sativa (japonica cult... 134 5e-30
gb|AAP52382.1| putative polyprotein [Oryza sativa (japonica cult... 134 6e-30
gb|AAD22153.1| polyprotein [Sorghum bicolor] 134 6e-30
gb|AAP53591.1| putative polyprotein [Oryza sativa (japonica cult... 133 8e-30
gb|AAV31371.1| putative polyprotein [Oryza sativa (japonica cult... 133 8e-30
gb|AAV31366.1| putative polyprotein [Oryza sativa (japonica cult... 133 8e-30
gb|AAT73655.1| putative polyprotein [Oryza sativa (japonica cult... 133 8e-30
ref|XP_475027.1| OSJNBb0093G06.8 [Oryza sativa (japonica cultiva... 133 1e-29
>gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
(japonica cultivar-group)] gi|37533358|ref|NP_920981.1|
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza
sativa (japonica cultivar-group)]
gi|21327374|gb|AAM48279.1| Putative 22 kDa kafirin
cluster; Ty3-Gypsy type [Oryza sativa (japonica
cultivar-group)] gi|18767374|gb|AAL79340.1| Putative 22
kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Length = 1230
Score = 150 bits (379), Expect = 7e-35
Identities = 106/396 (26%), Positives = 175/396 (43%), Gaps = 53/396 (13%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L F + PP F G +P A+ W+ +E+ F M C++ +K+ + T+ML A +WW +
Sbjct: 71 LGEFQKLKPPTFSGTANPLEAEEWIVAMEKSFEAMGCTDKEKIIYATYMLQSSAFEWWDA 130
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ +TW +F+ F +YFPE V+ KE EFLELKQG+ SV EY +F LA+
Sbjct: 131 HKKSYSER-IFITWELFKEAFYKKYFPESVKRMKEKEFLELKQGNKSVAEYEIEFSRLAR 189
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAIGYQQIRIFSDLVSRCRIYEEDTKAHYKVMS 213
F P + + SK +FE+GLR +KR + ++ IF ++VS+ ++ E K +++
Sbjct: 190 FAPEFV--QTDGSKARRFESGLRQPLKRRVEAFELTIFREVVSKAQLLE---KGYHE--- 241
Query: 214 ERRGKGHQNRPKPYSAPTDKGKQRLN----DERRPSKRDAPAEIVCFKCGEKGHKSNVCT 269
+R G + + P ++G+ R N +R+ S+ +C + H ++C
Sbjct: 242 QRIEHGQPQKKFKTNNPQNQGRFRGNYSGQMQRKSSENQGRKCPIC----QGSHVPSICP 297
Query: 270 KDEKKCFRCGQKGHMLADC----KRGDVVCYNCNEEGHISTQCTQ-----PKKVRVGG-- 318
+CF CG+ GH C K + V + T P G
Sbjct: 298 NCWGRCFECGEAGHTRYQCPLLQKGKNRVSSTTQPNTKVLTPVPSLYLPGPSSANNHGPN 357
Query: 319 -------------------------KVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTG 353
+V+ LT + + ++ G S P + D+G
Sbjct: 358 QGKPLANTNTTRGMRSNNSQGGNHARVYNLTKSTAEESNTVVTGNVLICSYPGKVLFDSG 417
Query: 354 ATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVT 389
ATH FI+ K + S +K + +ETP T
Sbjct: 418 ATHSFISTNFVRKYTIPTSQLKERICIETPLDSQTT 453
>gb|AAX95471.1| Retrotransposon gag protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 1441
Score = 145 bits (366), Expect = 2e-33
Identities = 118/408 (28%), Positives = 174/408 (41%), Gaps = 50/408 (12%)
Query: 16 VAQAVQQQPQAGNGEVRM--------LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRV 67
V Q VQQQ Q ++ L FLR PP F +P A WL +E+ +
Sbjct: 67 VLQQVQQQAQLQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNL 126
Query: 68 MQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRK 127
+QC+E +KV F TH L A WW + + V GA VTW FR F PE + +K
Sbjct: 127 LQCNEQEKVAFATHQLQGPASIWWDNYM-VTRPAGAEVTWTEFRHSFNKAQVPEGIVAQK 185
Query: 128 EIEFLELKQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFENGLRADIKRAIGYQQ 187
+ EF L+QG +V+EY +F LA++ P AE + KF +GL ++ + +
Sbjct: 186 KREFRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAERQE--KFLSGLDDELTNQLISRD 243
Query: 188 IRIFSDLVSRCRIYEEDTK-------------AHYKVMSERRGKGHQNRP--------KP 226
F LV + EE K R GHQ P +P
Sbjct: 244 YEDFEKLVDKAIRQEEQCNKMNRKRKAAQFRTPQGKCQKPRFTMGHQGGPSTMIIRQHRP 303
Query: 227 YSAPTDKGKQRLNDERRPSKRDAPAEI-VCFKCGEKGHKSNVCTKDEKKCFRCGQKGHML 285
Y P + K N S P+ + + + + + ++ K R G+K +
Sbjct: 304 YH-PGNFNKNN-NSGSHSSLNPTPSPLMIPAQSDQSDQLAQPALPEQPK--RLGEKPEL- 358
Query: 286 ADCKRGDVVCYNCNEEGHISTQCTQPKKVR---VGGKVFALTGTQTANEDRLIRGTCFFN 342
C+NCN+ GH +C +P++ V +V + + + +I GT N
Sbjct: 359 ---------CFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVN 409
Query: 343 STPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTT 390
STP + + D+GATH FI+ A GL + +K M V TP G TT
Sbjct: 410 STPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 457
>gb|AAX95470.1| Retrotransposon gag protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 1441
Score = 145 bits (366), Expect = 2e-33
Identities = 118/408 (28%), Positives = 174/408 (41%), Gaps = 50/408 (12%)
Query: 16 VAQAVQQQPQAGNGEVRM--------LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRV 67
V Q VQQQ Q ++ L FLR PP F +P A WL +E+ +
Sbjct: 67 VLQQVQQQAQLQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNL 126
Query: 68 MQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRK 127
+QC+E +KV F TH L A WW + + V GA VTW FR F PE + +K
Sbjct: 127 LQCNEQEKVAFATHQLQGPASIWWDNYM-VTRPAGAEVTWTEFRHSFNKAQVPEGIVAQK 185
Query: 128 EIEFLELKQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFENGLRADIKRAIGYQQ 187
+ EF L+QG +V+EY +F LA++ P AE + KF +GL ++ + +
Sbjct: 186 KREFRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAERQE--KFLSGLDDELTNQLISRD 243
Query: 188 IRIFSDLVSRCRIYEEDTK-------------AHYKVMSERRGKGHQNRP--------KP 226
F LV + EE K R GHQ P +P
Sbjct: 244 YEDFEKLVDKAIRQEEQCNKMNRKRKAAQFRTPQGKCQKPRFTMGHQGGPSTMIIRQHRP 303
Query: 227 YSAPTDKGKQRLNDERRPSKRDAPAEI-VCFKCGEKGHKSNVCTKDEKKCFRCGQKGHML 285
Y P + K N S P+ + + + + + ++ K R G+K +
Sbjct: 304 YH-PGNFNKNN-NSGSHSSLNPTPSPLMIPAQSDQSDQLAQPALPEQPK--RLGEKPEL- 358
Query: 286 ADCKRGDVVCYNCNEEGHISTQCTQPKKVR---VGGKVFALTGTQTANEDRLIRGTCFFN 342
C+NCN+ GH +C +P++ V +V + + + +I GT N
Sbjct: 359 ---------CFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVN 409
Query: 343 STPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTT 390
STP + + D+GATH FI+ A GL + +K M V TP G TT
Sbjct: 410 STPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 457
>ref|XP_471549.1| OSJNBa0019J05.10 [Oryza sativa (japonica cultivar-group)]
gi|38346425|emb|CAD40212.2| OSJNBa0019J05.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1525
Score = 142 bits (357), Expect = 2e-32
Identities = 117/408 (28%), Positives = 172/408 (41%), Gaps = 50/408 (12%)
Query: 16 VAQAVQQQPQAGNGEVRM--------LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRV 67
V Q VQQQ Q ++ L FLR PP F +P A WL +E+ +
Sbjct: 67 VLQQVQQQAQLQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNL 126
Query: 68 MQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRK 127
+QC+E +KV F TH L A WW + + V GA VTW FR F PE + +K
Sbjct: 127 LQCNEQEKVAFATHQLQGPASIWWDNYM-VTRPAGAEVTWTEFRHSFNKAQVPEGIVAQK 185
Query: 128 EIEFLELKQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFENGLRADIKRAIGYQQ 187
+ EF L+QG +V+EY +F LA++ P AE + KF +GL ++ + +
Sbjct: 186 KREFRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAERQE--KFLSGLDDELTNQLISRD 243
Query: 188 IRIFSDLVSRCRIYEEDTK-------------AHYKVMSERRGKGHQNRP--------KP 226
F LV + EE K R GHQ P +P
Sbjct: 244 YEDFEKLVDKAIRQEEQCNKMNRKRKAAQFRTPQGKCQKPRFTMGHQGGPSTMIIRQHRP 303
Query: 227 YSAPTDKGKQRLNDERRPSKRDAPAEI-VCFKCGEKGHKSNVCTKDEKKCFRCGQKGHML 285
Y P + K N S P+ + + + + + ++ K R G+K +
Sbjct: 304 YH-PGNFNKNN-NSGSHSSLNPTPSPLMIPAQSDQSDQLAQPALPEQPK--RLGEKPEL- 358
Query: 286 ADCKRGDVVCYNCNEEGHISTQCTQPKKVR---VGGKVFALTGTQTANEDRLIRGTCFFN 342
C+NCN+ GH +C +P+ V +V + + + +I GT N
Sbjct: 359 ---------CFNCNKPGHTVGKCPKPRHAGPKFVQARVNHASAEEAQSAPEVILGTFPVN 409
Query: 343 STPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTT 390
STP + + D+GATH I+ A GL + +K M V TP G TT
Sbjct: 410 STPAVILFDSGATHSLISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 457
>ref|NP_914622.1| similar to polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1524
Score = 142 bits (357), Expect = 2e-32
Identities = 119/411 (28%), Positives = 176/411 (41%), Gaps = 57/411 (13%)
Query: 16 VAQAVQQQPQAGNGEVRM--------LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRV 67
V Q VQQQ Q ++ L FLR PP F +P A WL +E+ +
Sbjct: 67 VMQQVQQQAQLQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNL 126
Query: 68 MQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRK 127
+QC+E +KV F TH L A WW + + V GA VTW FR F PE + +K
Sbjct: 127 LQCNEQEKVAFATHQLQGPASVWWDNYM-VTRPAGAEVTWTEFRHSFNKAQVPEGIVAQK 185
Query: 128 EIEFLELKQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFENGLRADIKRAIGYQQ 187
+ EF L+QG +V+EY +F LA++ P AE + KF +GL ++ + +
Sbjct: 186 KREFHSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAERQE--KFLSGLDDELTNQLISRD 243
Query: 188 IRIFSDLVSR-------CRIYEEDTKA------HYKVMSERRGKGHQNRP--------KP 226
F LV + C KA K R GH P +P
Sbjct: 244 YEDFEKLVDKAIRQEEHCNKINRKRKAAQFRTPQGKSQKPRFTMGHHGGPSTMIIRQHRP 303
Query: 227 YSAPTDKGKQRLNDERRPSKRDA----PAEIVCFKCGEKGHKSNVCTKDEKKCFRCGQKG 282
Y P + K +D S++ + P+ + K +V ++ R G+K
Sbjct: 304 YH-PGNFNKNHHSDSHNNSEQHSLNPTPSSL-------KIPAQSVQPALPEQPKRLGEKP 355
Query: 283 HMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR---VGGKVFALTGTQTANEDRLIRGTC 339
+ C+NCN+ GH +C +P++ V +V + + + +I GT
Sbjct: 356 EL----------CFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTF 405
Query: 340 FFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTT 390
NSTP + + D+GATH FI+ A GL + +K M V TP G TT
Sbjct: 406 PVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
>gb|AAO45751.1| gag-protease polyprotein [Cucumis melo]
Length = 429
Score = 140 bits (353), Expect = 7e-32
Identities = 110/392 (28%), Positives = 166/392 (42%), Gaps = 40/392 (10%)
Query: 10 AAALEAVAQAVQQQPQAGNGEVRMLETFLRNHPPAFKGRY-DPDGAQSWLKEVERIFRVM 68
A A V A Q P + E + L F + +P F G DP AQ WL +E IFR M
Sbjct: 36 APAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYM 95
Query: 69 QCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKE 128
+C E QKV+ ML + WW + +L + + +TW F+ F ++F +R K
Sbjct: 96 KCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKR 155
Query: 129 IEFLELKQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFENGLRADI-------KR 181
EFL L+QGDM+V +Y A+F L++F P E ++ KF GLR DI +
Sbjct: 156 QEFLNLEQGDMTVEQYDAEFDMLSRFAPEMI--ATEAARADKFVRGLRLDIQGLVRAFRP 213
Query: 182 AIGYQQIRIFSDLVSRCRIYEEDTKAHYKVMSERRGKGHQNRPKPYSAPTDKGKQRLNDE 241
A +R+ DL + R T ++R Q P P G+ R + +
Sbjct: 214 ATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFR-SFQ 272
Query: 242 RRPSKRDAPAEIVCFKCGEKGHKSNVCTKDEKKCFRCGQKGHMLADCKRGDVVCYNCNEE 301
++P F+ GE +CT CG+ H L C G C+ C +E
Sbjct: 273 QKP-----------FEAGEAARGKPLCT-------TCGK--HHLGRCLFGTRTCFKCRQE 312
Query: 302 GHISTQC---------TQPKKVRVGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDT 352
GH + +C Q G+ FA T+ ++ GT + + D+
Sbjct: 313 GHTADRCPLRVTGIAQNQGAGAPHQGRAFATNRTEAEKAGTVVTGTLPVLGHYALVLFDS 372
Query: 353 GATHCFIALECAYKLGLIVSDMKGEMVVETPA 384
G++H FI+ L V + + V TP+
Sbjct: 373 GSSHSFISSAFVSHARLEVEPLHHVLSVSTPS 404
>gb|AAV43991.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1499
Score = 137 bits (344), Expect = 8e-31
Identities = 103/376 (27%), Positives = 164/376 (43%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR HPP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 95 LAEFLRIHPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 153
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F FL + P V K+ EF ELKQG+ SV+EY +F LA+
Sbjct: 154 HFQATQPEGQPITWARFTAAFLRTHVPAGVMALKKREFRELKQGNRSVMEYLYEFNNLAR 213
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAIGYQQIRIFSDLVS---RCRIYEEDTKAHYK 210
+ P E E K KF G+ ++ + F LV R + ++ ++H
Sbjct: 214 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDSPDFQRLVDKSIRLEVKHKELESHKH 271
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAP-AEIVCFKCGEKGHKSNVCT 269
++ R + N+ Y+ P G + + R AP + V + +S T
Sbjct: 272 RLANFRHQQGANQRIHYTNPYPGGSSSQQQQHQQQPRSAPRPQFVVRVPQPQQQQSQQGT 331
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + Q G D + +C+NC E GH + +C +P++ +
Sbjct: 332 RAPRPPTPAVQPGQGRRDVQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKDV 391
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 392 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 451
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 452 NPLLITTP--GGVMTA 465
>gb|AAP52849.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532520|ref|NP_920562.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|13992687|gb|AAK51581.1| Putative retroelement [Oryza
sativa]
Length = 959
Score = 135 bits (341), Expect = 2e-30
Identities = 103/401 (25%), Positives = 171/401 (41%), Gaps = 23/401 (5%)
Query: 9 IAAALEAVAQAVQQQPQAGNGEVRMLETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVM 68
+AA L + Q + L FLR PP F +P A WL V + +
Sbjct: 302 MAAFLHHIQHPPQHNAPPPPPQHSKLVEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTV 361
Query: 69 QCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKE 128
QCS+ +KV F H L A WW + G +TWA F F + P V K+
Sbjct: 362 QCSDEEKVIFAAHQLQGPASLWW-DHFQATQPEGQPITWARFTAAFRRTHVPAGVMALKK 420
Query: 129 IEFLELKQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFENGLRADIKRAI---GY 185
EF ELKQG+ SV+EY +F LA++ P E E K KF G+ ++ + Y
Sbjct: 421 REFRELKQGNRSVMEYLHEFNNLARYAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDY 478
Query: 186 QQIRIFSDLVSRCRIYEEDTKAHYKVMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPS 245
+ D R +++ ++H + ++ R + N+ Y+ P G +++
Sbjct: 479 PDFQRLVDKSIRLEAKQKELESHKRRLASFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQ 538
Query: 246 KRDAPAEIVCFKCGE-KGHKSNVCTKDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHI 304
R AP + + + +S T+ Q G + D + +C+NC E GH
Sbjct: 539 PRSAPRPQFVVRVPQLQQQQSQQGTRAPCPPTPAAQSGQVRRDVQGPQRLCFNCFEPGHF 598
Query: 305 STQCTQPKKVR--------------VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAII 350
+ +C +P++ + + G+V +T +I GT +S P +
Sbjct: 599 ADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILF 658
Query: 351 DTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTS 391
D+GA+H FI++ + L V ++ +++ TP G V T+
Sbjct: 659 DSGASHSFISVPFVGRNQLGVERLRNPLLITTP--GGVMTA 697
>emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa (japonica cultivar-group)]
gi|38347085|emb|CAE05109.2| OSJNBa0001M07.5 [Oryza
sativa (japonica cultivar-group)]
gi|50930335|ref|XP_474695.1| OSJNBa0001M07.5 [Oryza
sativa (japonica cultivar-group)]
Length = 1471
Score = 135 bits (340), Expect = 2e-30
Identities = 113/387 (29%), Positives = 171/387 (43%), Gaps = 33/387 (8%)
Query: 11 AALEAVAQAVQQQPQAGNG--EVRMLETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVM 68
A ++ AQ QQ Q G + ++LE FLR PP F +P A WL +E+ ++
Sbjct: 43 AQVQQQAQQQQQNLQFGPPPPQSKLLE-FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLL 101
Query: 69 QCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKE 128
QC+E +KV F TH L A WW + + V GA VTW FR F PE + +K+
Sbjct: 102 QCNEQEKVAFATHQLQGPASVWWDNYM-VTRPTGAEVTWTEFRHSFNKAQVPEGIVAQKK 160
Query: 129 IEFLELKQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFENGLRADIKRAIGYQQI 188
EF L+QG +V+EY +F LA++ P AE K KF +GL ++ + +
Sbjct: 161 REFRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAE--KQEKFLSGLDDELTNQLISRDY 218
Query: 189 RIFSDLVSRCRIYEEDTKAHYKVMSERRGKGHQN-RPKPYSAPTDKGKQRLNDERR---- 243
F L + T H+ S + H+ P ++ G +++
Sbjct: 219 EDFEKLGKSQK--PRFTMGHHGGPSTMVIRPHRPYHPGSFNKNHHSGSHNNSEQHSLNPT 276
Query: 244 PSKRDAPAEIVCFKCGEKGHKSNVCTKDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGH 303
PS PA+ V E+ + + + CF C + GH + C +
Sbjct: 277 PSSLKIPAQSVRPALPEQPKRLG---EKPELCFNCNKPGHTVGKCPK------------- 320
Query: 304 ISTQCTQPKKVRVGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALEC 363
+ T PK V+ +V + + + +I GT NSTP + + D+GATH FI+
Sbjct: 321 --PRRTGPKFVQ--ARVNHASAEEARSAPEVILGTFPVNSTPAVILFDSGATHSFISKRF 376
Query: 364 AYKLGLIVSDMKGEMVVETPAKGSVTT 390
A GL + +K M V TP G TT
Sbjct: 377 AGAHGLSLVKLKIPMRVHTPGGGMTTT 403
>gb|AAT47449.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1943
Score = 134 bits (338), Expect = 4e-30
Identities = 100/376 (26%), Positives = 162/376 (42%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 365 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 423
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F F + P V K+ EF ELKQG+ SV+EY +F LA+
Sbjct: 424 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 483
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAI---GYQQIRIFSDLVSRCRIYEEDTKAHYK 210
+ P E E K KF G+ ++ + Y + D R ++ ++H +
Sbjct: 484 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 541
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSN-VCT 269
++ R + N+ Y+ P G +++ R AP + ++ + N T
Sbjct: 542 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRPAPRPQFVVRVPQQQQQQNQQGT 601
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + GQ D +C+NC E GH + +C +P++ +
Sbjct: 602 RAPRPPTPAGQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQKGQAPPRSNNGGKDV 661
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ K L V ++
Sbjct: 662 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGKNQLGVERLR 721
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 722 NPLLITTP--GGVMTA 735
>gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533104|ref|NP_920854.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22539088|gb|AAN01260.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1683
Score = 134 bits (337), Expect = 5e-30
Identities = 101/400 (25%), Positives = 168/400 (41%), Gaps = 40/400 (10%)
Query: 13 LEAVAQAVQQQPQAGNGEV---RMLETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQ 69
+ + Q Q Q GN L FLR PP F +P A WL +E+ ++Q
Sbjct: 311 MNMMMQQFQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQ 370
Query: 70 CSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEI 129
C++ +KV F +H L A +WW + +TW F F + P V K+
Sbjct: 371 CTDQEKVSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKK 429
Query: 130 EFLELKQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFENGLRADIKRAIGYQQIR 189
EF L QG SV EY +F LA++ P E + KF GL ++ +
Sbjct: 430 EFRSLSQGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYP 487
Query: 190 IFSDLVSRCRIYEEDTKAHYKVMSERRGK--------GHQNRPKPYSAPTDKGKQRLNDE 241
F LV + I +ED Y M +R+ + G +P+ P + +
Sbjct: 488 DFQKLVDKA-IRQEDK---YNCMEQRKRRIAHFKAQQGSNQKPRLTLGPQSMPQGGSSSV 543
Query: 242 RRPSKRDAPAEIVCFKCGEKGHKSNVCTKDEKKCFRCGQKGHMLADCKRGDVVCYNCNEE 301
RP ++ F G+ N+ + + Q+ + VVC+NC +
Sbjct: 544 VRPQRQ--------FFNNNVGN--NIRNQAPRPVAAPAQQQPAKREQGNKPVVCFNCGDP 593
Query: 302 GHISTQCTQPKKVRV------------GGKVFALTGTQTANEDRLIRGTCFFNSTPLIAI 349
GH + +C +P++V+V +V + + + +I GT NS P +
Sbjct: 594 GHYADKCPKPRRVKVVPAQNNSAVSASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVL 653
Query: 350 IDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVT 389
D+GATH F+++ A G+ V D++ ++V TP+ +++
Sbjct: 654 FDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALS 693
>emb|CAE02186.2| OSJNBa0080E14.17 [Oryza sativa (japonica cultivar-group)]
gi|32487701|emb|CAE05378.1| OSJNBa0022F16.2 [Oryza
sativa (japonica cultivar-group)]
gi|50930007|ref|XP_474531.1| OSJNBa0080E14.17 [Oryza
sativa (japonica cultivar-group)]
Length = 1494
Score = 134 bits (337), Expect = 5e-30
Identities = 99/376 (26%), Positives = 162/376 (42%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 357 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 415
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F F + P V K+ EF ELKQG+ SV+EY +F LA+
Sbjct: 416 HFQATQPEGQPITWARFTAAFRRTHVPAGVMALKKREFRELKQGNRSVMEYLHEFNNLAR 475
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAI---GYQQIRIFSDLVSRCRIYEEDTKAHYK 210
+ P E E K KF G+ ++ + Y + D R ++ ++H +
Sbjct: 476 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 533
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSN-VCT 269
++ R + N+ Y+ P G +++ R AP + + + N T
Sbjct: 534 RLANFRNQQDANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 593
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + Q G D + +C+NC E GH + +C +P++ +
Sbjct: 594 RAPRPPTPTVQPGQGRRDAQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 653
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 654 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 713
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 714 NPLLITTP--GGVMTA 727
>gb|AAT73646.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1764
Score = 134 bits (337), Expect = 5e-30
Identities = 100/376 (26%), Positives = 162/376 (42%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 339 LTEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVVFAAHQLQGPASLWW-D 397
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F F + P V K+ EF ELKQG+ SV+EY +F LA+
Sbjct: 398 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 457
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAI---GYQQIRIFSDLVSRCRIYEEDTKAHYK 210
+ P E E K KF G+ ++ + Y + D R ++ ++H +
Sbjct: 458 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 515
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSN-VCT 269
++ R + N+ Y+ P G +++ R AP + ++ + N T
Sbjct: 516 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRPAPRPQFVVRVPQQQQQQNQQGT 575
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + GQ D +C+NC E GH + +C +P++ +
Sbjct: 576 RAPRPPTPAGQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKDV 635
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ K L V ++
Sbjct: 636 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGKNQLGVERLR 695
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 696 NPLLITTP--GGVMTA 709
>gb|AAP52382.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531586|ref|NP_920095.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19881766|gb|AAM01167.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 892
Score = 134 bits (336), Expect = 6e-30
Identities = 100/376 (26%), Positives = 162/376 (42%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 386 LAEFLRIRPPTFSSSNNPVDALVWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 444
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F F + P V K+ EF ELKQG+ SV+EY +F LA+
Sbjct: 445 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 504
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAI---GYQQIRIFSDLVSRCRIYEEDTKAHYK 210
+ P E E K KF G+ ++ + Y + D R ++ ++H +
Sbjct: 505 YAPEDVREDEE--KQEKFLAGMDPELSVHLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 562
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSN-VCT 269
++ R + N+ Y+ P G +++ R AP + + + N T
Sbjct: 563 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 622
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + Q G D + +CYNC E GH + +C +P++ +
Sbjct: 623 RAPRPPTPTVQSGQGRRDAQGPQRLCYNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 682
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 683 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 742
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 743 NPLLITTP--GGVMTA 756
>gb|AAD22153.1| polyprotein [Sorghum bicolor]
Length = 1484
Score = 134 bits (336), Expect = 6e-30
Identities = 111/410 (27%), Positives = 174/410 (42%), Gaps = 55/410 (13%)
Query: 18 QAVQQQPQAGNGEVRMLET---FLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQ 74
Q +QQQP + + + F++ PP F DP A WL+ VER + QC++++
Sbjct: 52 QHLQQQPPPTPPPIHVRDKRGEFMKGRPPVFTHSADPMEADDWLRAVERQLNIAQCNDLE 111
Query: 75 KVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLEL 134
KV + + L A WW S N + VTW F R+F R+ E V K+ EF L
Sbjct: 112 KVLYASGQLQGAAQTWWESYQAARPNNASPVTWLEFCRDFRARHINEGVMELKQEEFRSL 171
Query: 135 KQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFENGLRADIKRAIGYQQIRIFSDL 194
+ G M+V EY F +LA++ P+ E A+ + F GL +++ + F L
Sbjct: 172 RMGSMTVAEYHDTFEQLARYAPNDVREDADKQRL--FMKGLYYELRLQLAGNTYPTFQAL 229
Query: 195 VSRCRIYEEDTKAHYK---VMSERRG----------KGHQNR-------------PKPYS 228
V+R + + K+ K ++++ G +GHQ R P+ +
Sbjct: 230 VNRAIVLDNMRKSQDKKRRMLAQGSGSNNRQRFSSHQGHQQRFQGPVSQWNRNQQPQRFQ 289
Query: 229 APTDKGKQR-----LNDERRPSKRDAPAEIVCFKCGEKGHKSNVCTKDEKKCFRCGQKGH 283
+ G QR N ++ + AP K SN T +CFRCG++GH
Sbjct: 290 NQSQSGNQRPPFQQRNHNQQQHGQQAPRPGNPNANSTKRSASNTPT----RCFRCGKEGH 345
Query: 284 MLADCKRGDVVCYNCNEEGHISTQCTQPKKVRVGGKVFALTGTQTANE-DRLIRGTCFFN 342
M DC YN + + P +V +T E ++ GT N
Sbjct: 346 MSYDCPEKFNPQYN--------DRRSTPNSAKVNN-----VAAETVQEGPEIMMGTFSIN 392
Query: 343 STPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSL 392
S P + D+GA+H FI+ L + M M+V +P G++ SL
Sbjct: 393 SIPATVLFDSGASHTFISQAFVRVHSLPLVAMNTPMLVNSPG-GTIPVSL 441
>gb|AAP53591.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534004|ref|NP_921304.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20503033|gb|AAM22721.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1784
Score = 133 bits (335), Expect = 8e-30
Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 397 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 455
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F F + P V K+ EF ELKQG+ SV EY +F LA+
Sbjct: 456 HFQATQPEGQPITWARFTAAFRRTHVPAGVMALKKREFRELKQGNRSVTEYLHEFNNLAR 515
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAI---GYQQIRIFSDLVSRCRIYEEDTKAHYK 210
+ P E E K KF G+ ++ + Y + D R ++ ++H +
Sbjct: 516 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 573
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSN-VCT 269
++ R + N+ Y+ P G +++ R AP + + + N T
Sbjct: 574 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 633
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + Q G D + +C+NC E GH + +C +P++ +
Sbjct: 634 RAPRPPTPTVQPGQGRRDAQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 693
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 694 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 753
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 754 NPLLITTP--GGVMTA 767
>gb|AAV31371.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1820
Score = 133 bits (335), Expect = 8e-30
Identities = 99/376 (26%), Positives = 162/376 (42%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 395 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 453
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F F + P V K+ EF ELKQG+ SV+EY +F LA+
Sbjct: 454 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 513
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAI---GYQQIRIFSDLVSRCRIYEEDTKAHYK 210
+ P E E K KF G+ ++ + Y + D + R ++ ++H +
Sbjct: 514 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKIIRLEAKHKELESHKR 571
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSN-VCT 269
+ R + N+ Y+ P G +++ R AP + + + N T
Sbjct: 572 RLVNFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 631
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + Q G D + +C+NC E GH + +C +P++ +
Sbjct: 632 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 691
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 692 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 751
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 752 NPLLITTP--GGVMTA 765
>gb|AAV31366.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1826
Score = 133 bits (335), Expect = 8e-30
Identities = 100/376 (26%), Positives = 162/376 (42%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 424 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVVFAAHQLQGPASLWW-D 482
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F F + P V K+ EF ELKQG+ SV+EY +F LA+
Sbjct: 483 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 542
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAI---GYQQIRIFSDLVSRCRIYEEDTKAHYK 210
+ P E E K KF GL ++ + Y + D R ++ ++H +
Sbjct: 543 YAPEDVREDEE--KQEKFLAGLDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 600
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSN-VCT 269
++ R + N+ Y+ P G +++ R AP + + + N T
Sbjct: 601 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 660
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + Q G D + +C+NC E GH + +C +P++ +
Sbjct: 661 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 720
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 721 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 780
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 781 NPLLITTP--GGVMTA 794
>gb|AAT73655.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1747
Score = 133 bits (335), Expect = 8e-30
Identities = 100/376 (26%), Positives = 162/376 (42%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 345 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVVFAAHQLQGPASLWW-D 403
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F F + P V K+ EF ELKQG+ SV+EY +F LA+
Sbjct: 404 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 463
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAI---GYQQIRIFSDLVSRCRIYEEDTKAHYK 210
+ P E E K KF GL ++ + Y + D R ++ ++H +
Sbjct: 464 YAPEDVREDEE--KQEKFLAGLDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 521
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSN-VCT 269
++ R + N+ Y+ P G +++ R AP + + + N T
Sbjct: 522 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 581
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + Q G D + +C+NC E GH + +C +P++ +
Sbjct: 582 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 641
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 642 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 701
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 702 NPLLITTP--GGVMTA 715
>ref|XP_475027.1| OSJNBb0093G06.8 [Oryza sativa (japonica cultivar-group)]
gi|38347567|emb|CAE05000.2| OSJNBb0093G06.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1770
Score = 133 bits (334), Expect = 1e-29
Identities = 99/376 (26%), Positives = 162/376 (42%), Gaps = 23/376 (6%)
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 345 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 403
Query: 94 LLPVLEQNGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
+ G +TWA F F + P V K+ EF ELKQG+ SV+EY +F LA+
Sbjct: 404 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 463
Query: 154 FYPHYAPETAEFSKCIKFENGLRADIKRAI---GYQQIRIFSDLVSRCRIYEEDTKAHYK 210
+ P E E K KF G+ ++ + Y + D R ++ ++H +
Sbjct: 464 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 521
Query: 211 VMSERRGKGHQNRPKPYSAPTDKGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSN-VCT 269
++ R + N+ Y+ P G +++ R AP + + + N T
Sbjct: 522 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 581
Query: 270 KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKKVR-------------- 315
+ + Q G D + +C+NC E GH + +C +P++ +
Sbjct: 582 RAPRPPTPTVQPGQGRRDAQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 641
Query: 316 VGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMK 375
+ G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 642 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 701
Query: 376 GEMVVETPAKGSVTTS 391
+++ TP G V T+
Sbjct: 702 NPLLITTP--GGVMTA 715
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 682,339,359
Number of Sequences: 2540612
Number of extensions: 29501715
Number of successful extensions: 101131
Number of sequences better than 10.0: 4693
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 3345
Number of HSP's that attempted gapping in prelim test: 79223
Number of HSP's gapped (non-prelim): 17151
length of query: 396
length of database: 863,360,394
effective HSP length: 130
effective length of query: 266
effective length of database: 533,080,834
effective search space: 141799501844
effective search space used: 141799501844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)
Medicago: description of AC136954.7