BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136953.3 + phase: 0 /pseudo
(630 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB79778.1| signal recognition particle receptor-like protei... 898 0.0
ref|XP_482983.1| putative signal recognition particle receptor [... 839 0.0
ref|XP_482982.1| putative signal recognition particle receptor [... 810 0.0
gb|AAQ76042.1| signal recognition particle receptor protein [Cuc... 576 e-163
ref|XP_642799.1| hypothetical protein DDB0217967 [Dictyostelium ... 465 e-129
ref|NP_524887.2| CG2522-PA [Drosophila melanogaster] gi|22832080... 446 e-123
emb|CAH65394.1| hypothetical protein [Gallus gallus] 443 e-123
ref|XP_564031.1| ENSANGP00000027496 [Anopheles gambiae str. PEST... 442 e-122
ref|XP_309798.2| ENSANGP00000012386 [Anopheles gambiae str. PEST... 438 e-121
ref|NP_080406.1| signal recognition particle receptor ('docking ... 432 e-119
gb|AAH21839.1| Signal recognition particle receptor ('docking pr... 432 e-119
ref|XP_235989.3| PREDICTED: similar to signal recognition partic... 432 e-119
gb|EAL32559.1| GA15385-PA [Drosophila pseudoobscura] 431 e-119
gb|AAH01162.1| Signal recognition particle receptor ('docking pr... 430 e-119
emb|CAH91283.1| hypothetical protein [Pongo pygmaeus] 430 e-119
emb|CAA26945.1| signal recognition particle receptor [Canis sp.]... 429 e-118
emb|CAA29608.1| unnamed protein product [Homo sapiens] 428 e-118
emb|CAG00952.1| unnamed protein product [Tetraodon nigroviridis] 428 e-118
emb|CAG33306.1| SRPR [Homo sapiens] 426 e-117
ref|XP_546411.1| PREDICTED: similar to signal recognition partic... 401 e-110
>emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis
thaliana] gi|22137194|gb|AAM91442.1| AT4g30600/F17I23_60
[Arabidopsis thaliana] gi|18086492|gb|AAL57699.1|
AT4g30600/F17I23_60 [Arabidopsis thaliana]
gi|15234792|ref|NP_194789.1| signal recognition particle
receptor alpha subunit family protein [Arabidopsis
thaliana] gi|25407666|pir||A85358 hypothetical protein
AT4g30600 [imported] - Arabidopsis thaliana
Length = 634
Score = 898 bits (2321), Expect = 0.0
Identities = 489/644 (75%), Positives = 539/644 (82%), Gaps = 25/644 (3%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
MLEQLLIFTRGGLILW+C EIGNALKGSPIDTLIRSCLLEERSGA S+NYDAPGAAY+LK
Sbjct: 1 MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYRDFDEIFKQLKIEA 120
WTFHNDLGLVFVAVYQRILHLLYVDDLL+ VK+ FS+VYDP R Y DFDE F+QL+IEA
Sbjct: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMAYDDFDETFRQLRIEA 120
Query: 121 EARAEDLKKSNPV---IVGGNRKQQVTWKGDGSDGKKNGSAGGGLKNDGDGKNGKKNSEN 177
EARAE+L+K+ V + ++ QV+ G K+ S GG K+DGDG N K S
Sbjct: 121 EARAEELRKTKQVGKPVTSVKKQGQVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAKVSTL 180
Query: 178 DRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKGGNGK----K 233
+NGN + + + N NGKEN S +N A D+++LQK +R+KG G+ K
Sbjct: 181 TNGH--SNGN-HQMEDDSQETNDLANGKENTS-SNVAVDLSKLQK-LRSKGVRGRGGVRK 235
Query: 234 TDAVVTK----AEP-KKVVKKNRVWDEK-PVETKLDFTDHVDIDGDADKDRKVDYLAKEQ 287
TD++ K AEP KK KKNRVWD+ P ++KLDFTD +D +G+ D VD +A +Q
Sbjct: 236 TDSIGNKSSKVAEPAKKATKKNRVWDDAAPKQSKLDFTDSIDENGNNDH---VDIVAADQ 292
Query: 288 GESMMDKDEIFSSDSEDEEDDDDDNAGKKSKP-DAKKKGWFSSMFQSIAGKANLEKSDLE 346
GESMMDK+E+FSSDSE E DDD G KP AKKKGWFSS+FQSI GKANLE++DL
Sbjct: 293 GESMMDKEEVFSSDSESE---DDDEPGSDEKPAQAKKKGWFSSVFQSITGKANLERTDLG 349
Query: 347 PALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTP 406
PALKALK+RLMTKNVAEEIAEKLCESV ASLEGKKL+SFTRISSTVQAAMEDALVRILTP
Sbjct: 350 PALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTP 409
Query: 407 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFRS 466
RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQH V+VMMAACDTFRS
Sbjct: 410 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRS 469
Query: 467 GAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLM 526
GAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEA+RNGSDVVLVDTAGRMQDNEPLM
Sbjct: 470 GAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM 529
Query: 527 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDT 586
RALSKLI LN PDLVLFVGEALVGNDAVDQLSKFNQKL+DLSTS PRLIDGILLTKFDT
Sbjct: 530 RALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDT 589
Query: 587 IDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 630
IDDKVGAALSMVYISG+PVMFVGCGQSYTDLKKLNVK+IVKTLL
Sbjct: 590 IDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLL 633
>ref|XP_482983.1| putative signal recognition particle receptor [Oryza sativa
(japonica cultivar-group)] gi|42409015|dbj|BAD10268.1|
putative signal recognition particle receptor [Oryza
sativa (japonica cultivar-group)]
gi|42408581|dbj|BAD09758.1| putative signal recognition
particle receptor [Oryza sativa (japonica
cultivar-group)]
Length = 624
Score = 839 bits (2168), Expect = 0.0
Identities = 461/645 (71%), Positives = 527/645 (81%), Gaps = 37/645 (5%)
Query: 1 MLEQLLIFTRGGLILWS-CNEIGNA-LKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYS 58
MLE+LLIFTRGGLILWS C +G A LKGSPID LIRSCLLEERS +S++ D Y+
Sbjct: 1 MLEELLIFTRGGLILWSSCRALGGAALKGSPIDALIRSCLLEERSADASFSQDT----YA 56
Query: 59 LKWTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYRD-FDEIFKQLK 117
LKWTF+NDLGLVFVAVYQR+LHLLYVDDLLAAV++EFSQ+YDP RT Y D F+E+F+QL
Sbjct: 57 LKWTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIYDPKRTSYDDAFNEVFRQLH 116
Query: 118 IEAEARAEDLKKSNPVIVGGNRKQQVTWKGDGSD------GKKNGSAGGGLKNDGDGKNG 171
+EAEAR+E++KK+ V G+R +VT K + D G+K G +G K+D DG +G
Sbjct: 117 LEAEARSEEMKKNKQVT--GSRPTKVTTKTNRGDTQGSGGGRKKGDSG---KDDSDGDSG 171
Query: 172 KKNS-ENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKGGN 230
K+++ N S + N +L+ N +V V GKEN N+GAFDVN+LQK +RNKG
Sbjct: 172 KEHTLPNGNSKMQEN----SLKDNSHARSVVVKGKENGDPNDGAFDVNKLQK-MRNKGNK 226
Query: 231 GKKTDAVV----TKAEPKKVVKKNRVWDEKPVETK-LDFTDHVDIDGDADKDRKVDYLAK 285
+ + V +KA KK +KKNRVWD+ P + K LDFTD D GD +D +
Sbjct: 227 KNEVASNVAKNTSKANTKKNLKKNRVWDDTPDDKKKLDFTDPADERGD----EVIDQVVV 282
Query: 286 EQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKKGWFSSMFQSIAGKANLEKSDL 345
+QGESMMDKD++ SSDS++EE+D ++N+G K KKGWFSSMF+SIAG LEKSD+
Sbjct: 283 KQGESMMDKDDVVSSDSDEEEEDGEENSGASQK----KKGWFSSMFKSIAGNNVLEKSDI 338
Query: 346 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILT 405
+PALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL SFTRISSTVQ AME+AL+RILT
Sbjct: 339 QPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILT 398
Query: 406 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFR 465
PRRSIDILRDVHAAKE+ KPYV+VFVGVNGVGKSTNLAKVAYWL QHN++V +AACDTFR
Sbjct: 399 PRRSIDILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFR 458
Query: 466 SGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPL 525
SGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEA+RN SDVVLVDTAGRMQDNEPL
Sbjct: 459 SGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPL 518
Query: 526 MRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFD 585
MRALSKLI LN+PDLVLFVGEALVGNDAVDQL+KFNQKLADLS PT RLIDGILLTKFD
Sbjct: 519 MRALSKLINLNSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFD 578
Query: 586 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 630
TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL
Sbjct: 579 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 623
>ref|XP_482982.1| putative signal recognition particle receptor [Oryza sativa
(japonica cultivar-group)] gi|42409016|dbj|BAD10269.1|
putative signal recognition particle receptor [Oryza
sativa (japonica cultivar-group)]
gi|42408582|dbj|BAD09759.1| putative signal recognition
particle receptor [Oryza sativa (japonica
cultivar-group)]
Length = 610
Score = 810 bits (2092), Expect = 0.0
Identities = 450/645 (69%), Positives = 516/645 (79%), Gaps = 51/645 (7%)
Query: 1 MLEQLLIFTRGGLILWS-CNEIGNA-LKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYS 58
MLE+LLIFTRGGLILWS C +G A LKGSPID +S++ D Y+
Sbjct: 1 MLEELLIFTRGGLILWSSCRALGGAALKGSPID--------------ASFSQDT----YA 42
Query: 59 LKWTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYRD-FDEIFKQLK 117
LKWTF+NDLGLVFVAVYQR+LHLLYVDDLLAAV++EFSQ+YDP RT Y D F+E+F+QL
Sbjct: 43 LKWTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIYDPKRTSYDDAFNEVFRQLH 102
Query: 118 IEAEARAEDLKKSNPVIVGGNRKQQVTWKGDGSD------GKKNGSAGGGLKNDGDGKNG 171
+EAEAR+E++KK+ V G+R +VT K + D G+K G +G K+D DG +G
Sbjct: 103 LEAEARSEEMKKNKQVT--GSRPTKVTTKTNRGDTQGSGGGRKKGDSG---KDDSDGDSG 157
Query: 172 KKNS-ENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKGGN 230
K+++ N S + N +L+ N +V V GKEN N+GAFDVN+LQK +RNKG
Sbjct: 158 KEHTLPNGNSKMQEN----SLKDNSHARSVVVKGKENGDPNDGAFDVNKLQK-MRNKGNK 212
Query: 231 GKKTDAVV----TKAEPKKVVKKNRVWDEKPVETK-LDFTDHVDIDGDADKDRKVDYLAK 285
+ + V +KA KK +KKNRVWD+ P + K LDFTD D GD +D +
Sbjct: 213 KNEVASNVAKNTSKANTKKNLKKNRVWDDTPDDKKKLDFTDPADERGD----EVIDQVVV 268
Query: 286 EQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKKGWFSSMFQSIAGKANLEKSDL 345
+QGESMMDKD++ SSDS++EE+D ++N+G K KKGWFSSMF+SIAG LEKSD+
Sbjct: 269 KQGESMMDKDDVVSSDSDEEEEDGEENSGASQK----KKGWFSSMFKSIAGNNVLEKSDI 324
Query: 346 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILT 405
+PALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL SFTRISSTVQ AME+AL+RILT
Sbjct: 325 QPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILT 384
Query: 406 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFR 465
PRRSIDILRDVHAAKE+ KPYV+VFVGVNGVGKSTNLAKVAYWL QHN++V +AACDTFR
Sbjct: 385 PRRSIDILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFR 444
Query: 466 SGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPL 525
SGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEA+RN SDVVLVDTAGRMQDNEPL
Sbjct: 445 SGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPL 504
Query: 526 MRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFD 585
MRALSKLI LN+PDLVLFVGEALVGNDAVDQL+KFNQKLADLS PT RLIDGILLTKFD
Sbjct: 505 MRALSKLINLNSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFD 564
Query: 586 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 630
TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL
Sbjct: 565 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 609
>gb|AAQ76042.1| signal recognition particle receptor protein [Cucumis sativus]
Length = 313
Score = 576 bits (1485), Expect = e-163
Identities = 298/311 (95%), Positives = 307/311 (97%)
Query: 320 DAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEG 379
DAKKKGWFSSMFQSI+GKA+L+K+DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEG
Sbjct: 2 DAKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEG 61
Query: 380 KKLASFTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKS 439
KKLASFTRISSTVQAAME+ALVRILTPRRSIDILRDVHAAKEQ+KPYVVVFVGVNGVGKS
Sbjct: 62 KKLASFTRISSTVQAAMEEALVRILTPRRSIDILRDVHAAKEQKKPYVVVFVGVNGVGKS 121
Query: 440 TNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEA 499
TNLAKVAYWL QH V+VMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEA
Sbjct: 122 TNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEA 181
Query: 500 IQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 559
IQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLI LN+PDLVLFVGEALVGNDAVDQLSK
Sbjct: 182 IQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSK 241
Query: 560 FNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKK 619
FNQKLADLSTSP PRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKK
Sbjct: 242 FNQKLADLSTSPEPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKK 301
Query: 620 LNVKSIVKTLL 630
LNVKSIVKTL+
Sbjct: 302 LNVKSIVKTLI 312
>ref|XP_642799.1| hypothetical protein DDB0217967 [Dictyostelium discoideum]
gi|60470903|gb|EAL68875.1| hypothetical protein
DDB0217967 [Dictyostelium discoideum]
Length = 615
Score = 465 bits (1196), Expect = e-129
Identities = 280/641 (43%), Positives = 387/641 (59%), Gaps = 38/641 (5%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ I T+GG++LWS E +KGSPI++LI+ LLEERS +S+ D+ YSLK
Sbjct: 1 MLDSFTILTKGGIVLWS-KEFAK-IKGSPINSLIKKVLLEERSAETSFQIDS----YSLK 54
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYR---DFDEIFKQLK 117
WTF N+ L+FV VYQ+I LLY+++LL VK+ F ++Y + DF + K +
Sbjct: 55 WTFSNEFDLIFVVVYQKIFTLLYIEELLTTVKKRFIKMYKDLLLKLKESSDFIIVDKFQE 114
Query: 118 IEAEARAEDLKKSNPVIVGGN---RKQQVTWKGDGSDGKKNGSA---GGGLKNDGDGKNG 171
E ED++ + + N +K + T KG +KN A G K +
Sbjct: 115 FNFEVILEDVENRSKLQQTSNSAPKKYEDTDKGKLVKDQKNERAIKEGRVEKVKRKEQEK 174
Query: 172 KKNSENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKGGNG 231
K+ +E + NN N + + + S +G +++ +NGA + G
Sbjct: 175 KEKAERRKQNKANNINDISSDDDSDDSDSS-SGSDSEENSNGATKNQQTDVARIENSGYK 233
Query: 232 KKTDAVVTKAEPKKVVKKNRVWDEKPVETKLDFTDHVDIDGDADKDRKVDYLAKEQGESM 291
KK K KK R W++ + K ++ +D + + ++ +
Sbjct: 234 KKVKDTPDKQASSSTGKKARTWEDGKLSKK-----ELEALNRSDNSNGTEIVREKIQKFN 288
Query: 292 MDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKKGWFSSMFQSIAGKANLEKSDLEPALKA 351
+D D + SSD +DEE+ AK F F + G ++K DLEP L
Sbjct: 289 IDMD-VSSSDDDDEEE-------------AKPVSGFMKYFNVLTGNRVIDKQDLEPILAD 334
Query: 352 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSID 411
K L KNVA ++A+K+ +S+ LEGKKLA+F ++S V+ MED + RILTP+R+ID
Sbjct: 335 FKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATFQGVTSVVKQQMEDTITRILTPKRNID 394
Query: 412 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQ 471
ILR+V A K +R PY +VF GVNGVGKSTNLAKV YWL + M+AACDTFRSGA+EQ
Sbjct: 395 ILREVQAVKGKR-PYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACDTFRSGAIEQ 453
Query: 472 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSK 531
L+THA RL + +FE+GY KD A VA++AI A G DVVL+DT GRMQ+NEPLM+ALSK
Sbjct: 454 LKTHADRLNVHLFERGYSKDAASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKALSK 513
Query: 532 LIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL--STSPTPRLIDGILLTKFDTIDD 589
L+ NN DLVLFVGEALVGND VDQL+KF++ L+ L +T R IDGI+LTKFDTIDD
Sbjct: 514 LVNQNNVDLVLFVGEALVGNDGVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFDTIDD 573
Query: 590 KVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 630
KVGAA+SMVY +G P++F+G GQ+YTDLK++N+KS+VK+LL
Sbjct: 574 KVGAAISMVYSTGHPILFLGTGQNYTDLKRMNIKSVVKSLL 614
>ref|NP_524887.2| CG2522-PA [Drosophila melanogaster] gi|22832080|gb|AAF48002.2|
CG2522-PA [Drosophila melanogaster]
gi|47117334|sp|Q9U5L1|SRPR_DROME Signal recognition
particle receptor alpha subunit homolog (SR-alpha)
(Docking protein alpha) (DP-alpha) (GTP-binding protein)
Length = 614
Score = 446 bits (1147), Expect = e-123
Identities = 269/651 (41%), Positives = 384/651 (58%), Gaps = 59/651 (9%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ ++IFT+GG++LW N GN+ S I++LIR +LEER+ + Y Y+ A K
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLAVQFK 58
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYR-DFDEIFKQLKIE 119
N+L LV+ A++Q+++ L Y+D LA ++ F + Y R DFD ++++
Sbjct: 59 --LDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 116
Query: 120 AEARAEDLKKSNPVIVGGNRKQQVTWKGDGSDGKKNGSAGGGLKNDGDGKNGKKNSENDR 179
AE + K+ + N Q K+ +
Sbjct: 117 AEEASAKQVKAPKTMRSYNESQ-------------------------------KSKKTVA 145
Query: 180 SAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFD--VNRLQKKVRNKGGNGKKTDAV 237
S I ++ R N + + D + ++K+R K KKT
Sbjct: 146 SMIQDDKKPVEKRVNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREKLTPTKKTSPS 205
Query: 238 VTKA-EPKKVVKKNRVWDEKPVETKLDFTDHVDIDGDADKDRKVDYLAKEQGESMMDKDE 296
+K+ +P+K KK RVWD D D+ D + + E +M
Sbjct: 206 DSKSSKPEKAGKKPRVWDLGGNSKDAALLDR---SRDSPDDVQYQNINSELVGTMQGVIR 262
Query: 297 IFSSDSEDEEDDDDDNAGKKSKPDAK----KKGWFSSMFQSIAGKANLEKSDLEPALKAL 352
+SEDE D++D ++ +++ + K+G S F+ I G + +DL+PAL+ +
Sbjct: 263 DLDVESEDEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKM 322
Query: 353 KDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDI 412
+D L++KNVA EIA KLC+SVAASL+GK++ +F I+S V+ A+ ++LVRIL+P+R IDI
Sbjct: 323 RDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDI 382
Query: 413 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQL 472
+RD +K +PY ++F GVNGVGKSTNLAK+ +WL +++ NV++AACDTFR+GAVEQL
Sbjct: 383 IRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQL 442
Query: 473 RTHARRLQ-------------IPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRM 519
RTH R L + ++EKGY KD A +A EAI+ A DVVLVDTAGRM
Sbjct: 443 RTHTRHLNALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRM 502
Query: 520 QDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGI 579
QDNEPLMR+LSKLI +NNPDLVLFVGEALVGN+AVDQL KFNQ LAD S++ P +IDGI
Sbjct: 503 QDNEPLMRSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGI 562
Query: 580 LLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 630
+LTKFDTIDDKVGAA+SM YI+G P++FVG GQ+Y DLK +NV ++V +L+
Sbjct: 563 VLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLM 613
>emb|CAH65394.1| hypothetical protein [Gallus gallus]
Length = 644
Score = 443 bits (1140), Expect = e-123
Identities = 274/665 (41%), Positives = 380/665 (56%), Gaps = 58/665 (8%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGS--PIDTLIRSCLLEERSGASSYNYDAPGAAYS 58
ML+ IF++GGL+LW + + P++ LIRS LL+ER G +S+ ++A +
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVRGPASAATAPVNALIRSVLLQERGGNNSFTHEA----LT 56
Query: 59 LKWTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVY-------------DPTRTV 105
LK+ N LVFV +Q+IL L YVD L+ V +EF Y + T
Sbjct: 57 LKYKLDNQFELVFVVGFQKILTLTYVDKLIDDVHKEFRDKYRNEFQQKGALGILNGTFDF 116
Query: 106 YRDFDEIFKQLKIEAEARAEDLKKSNPVIVGGNRKQQVTWKGDGSDGKKNGSAGGGLKND 165
DF + ++ + ++ RA + K+ V + + + G K+ +KN
Sbjct: 117 KDDFLRLLREAEESSKVRAPTVMKTFEQSVKSQKTVKCMIETRGEKPKEK------VKNK 170
Query: 166 GDGKNGKKNSENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVR 225
KN E + + +N + + G+ K+ + + + + K
Sbjct: 171 ---KNKGSKKEGNEAVTASNKTAPGEKQSSAAGDKEELTKD-EILQKNREEFFKRHMKAG 226
Query: 226 NKGGNGKKTDAVVTKAEPKKVVKKNRVWDEKPVETKLDFTDHVDIDGDADKDRKVDY--- 282
K K DA K KK RVWD K+ + +G+++ D+
Sbjct: 227 EKSSKSPKPDAQKEKG------KKPRVWDLGNSNAKVLDYSNSTTNGNSEASPMEDFDPD 280
Query: 283 --LAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKKGW--FSSMFQSIAGKA 338
L E D + SD E EE+ N SKP KK G M + + G
Sbjct: 281 MALRDRNREPGRLYDLEYESDEEAEEEKIIQNT---SKPSTKKGGLGGMFGMLKGLVGSK 337
Query: 339 NLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMED 398
+L + +++P L+ +KD L+ KNVA EIA +LCESVA LEGK + +FT ++STV+ A+++
Sbjct: 338 SLTRQNMDPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTSTVKQALQE 397
Query: 399 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMM 458
ALV+IL P+R +D+LRDV A+ R+PYVV F GVNGVGKSTNLAK+++WL ++ +V++
Sbjct: 398 ALVQILQPQRRVDVLRDVMDAQRHRRPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLI 457
Query: 459 AACDTFRSGAVEQLRTHARRLQ-------------IPIFEKGYEKDPAVVAKEAIQEASR 505
AACDTFR+GAVEQLRTH RRL + ++EKGY KD A +A EAI A
Sbjct: 458 AACDTFRAGAVEQLRTHTRRLNALHPPESHGGRTMVQLYEKGYGKDAAGIAMEAISYARN 517
Query: 506 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 565
G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+ LA
Sbjct: 518 QGFDVVLVDTAGRMQDNAPLMTALAKLIAVNAPDLVLFVGEALVGNEAVDQLVKFNKALA 577
Query: 566 DLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSI 625
D S + TPRLIDGI+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL+ LN K++
Sbjct: 578 DHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAV 637
Query: 626 VKTLL 630
V L+
Sbjct: 638 VAALM 642
>ref|XP_564031.1| ENSANGP00000027496 [Anopheles gambiae str. PEST]
gi|55244414|gb|EAL41473.1| ENSANGP00000027496 [Anopheles
gambiae str. PEST]
Length = 616
Score = 442 bits (1137), Expect = e-122
Identities = 280/665 (42%), Positives = 376/665 (56%), Gaps = 85/665 (12%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IFT+GG++LW C N L ++ LI+S +L+ERSG YD G SL+
Sbjct: 1 MLDLFTIFTKGGIVLW-CFRSTNQLFAPSVNALIKSVILQERSGV----YDHDGL--SLQ 53
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYR-------DFDEIF 113
+ N+ LVFV +Q+IL L Y+D L+ V EF Y V +F F
Sbjct: 54 YKLDNEFELVFVVAFQKILQLSYIDKFLSDVHLEFRDRYKNDLRVDNRNYGADFEFGADF 113
Query: 114 KQLKIEAE-------------ARAEDLKKSNPVIVGGNRKQQVTWKGDGSDGKKNGSAGG 160
+++ AE ED KS + + KG + K AG
Sbjct: 114 RRILERAEKWGRQQATMPKQMRSYEDSAKSKKTVA-----SMIERKG---EEKPPAGAGS 165
Query: 161 GLKNDGDGKNGKKNSENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRL 220
G KNDG E RS RSNG + D +
Sbjct: 166 GSKNDG--------MEAPRSP----------RSNGSPPELG-----EDLIMESRKKFAEK 202
Query: 221 QKKVRNKGGNGKKTDAVVTKAEPKKVV--KKNRVWDEKPVETKLDFTDHVDIDGDADKDR 278
K GG G K + + P++ K+ RVWD + ++D D +D
Sbjct: 203 MKGGSGGGGKGSKLEKQKSPKSPQQPQKGKQMRVWD---LGGNTKDLPNLDRSKDRPEDV 259
Query: 279 KVDYLAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKKGWFSSMFQSIAGKA 338
K D+ D+I S D D++ KP + +G SMF+ + G
Sbjct: 260 KSDF---------TPNDQIIGSMRGGIRDLAVDSSSGGKKPSSSSRGGMFSMFKGLVGSK 310
Query: 339 NLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMED 398
NL + D++PAL L+D L+ KNVA +IA+KLC+SVA LEG+ + +F I++TV+ + +
Sbjct: 311 NLTRDDMQPALDKLRDHLIGKNVASDIAQKLCDSVAGKLEGRVIGTFDTIATTVRNTLTE 370
Query: 399 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMM 458
ALV+IL+P+R +DILRD AK +P+V+ F GVNGVGKSTNLAK+ +WL ++N++V++
Sbjct: 371 ALVQILSPKRRVDILRDCLEAKRAGRPFVMSFCGVNGVGKSTNLAKICFWLIENNLSVLI 430
Query: 459 AACDTFRSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAVVAKEAIQEASR 505
AACDTFR+GAVEQLRTH R L + ++EKGY KD A +A EAI+ A+
Sbjct: 431 AACDTFRAGAVEQLRTHMRHLNALHPAERHGGRSMVQLYEKGYGKDAAGIAMEAIRYAND 490
Query: 506 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 565
+ DVVL+DTAGRMQDNEPLMRAL+KLI +N PDLVLFVGEALVGN+AVDQL KFNQ LA
Sbjct: 491 SKIDVVLIDTAGRMQDNEPLMRALAKLIKVNEPDLVLFVGEALVGNEAVDQLVKFNQALA 550
Query: 566 DLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSI 625
D S+S P +IDGI+LTKFDTIDDKVGAA+SM YI+G P++FVG GQ+YTDLK LN K++
Sbjct: 551 DYSSSERPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNAKAV 610
Query: 626 VKTLL 630
V L+
Sbjct: 611 VHALM 615
>ref|XP_309798.2| ENSANGP00000012386 [Anopheles gambiae str. PEST]
gi|55244413|gb|EAA05506.3| ENSANGP00000012386 [Anopheles
gambiae str. PEST]
Length = 634
Score = 438 bits (1127), Expect = e-121
Identities = 275/662 (41%), Positives = 380/662 (56%), Gaps = 61/662 (9%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IFT+GG++LW C N L ++ LI+S +L+ERSG YD G SL+
Sbjct: 1 MLDLFTIFTKGGIVLW-CFRSTNQLFAPSVNALIKSVILQERSGV----YDHDGL--SLQ 53
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYR-----------DF 109
+ N+ LVFV +Q+IL L Y+D L+ V EF Y V DF
Sbjct: 54 YKLDNEFELVFVVAFQKILQLSYIDKFLSDVHLEFRDRYKNDLRVDNRNYGADFEFGADF 113
Query: 110 DEIFKQLKIEAEARAEDLKKSNPVIVGGNRKQQVTWKGDGSDGKKNGSAGGGLKNDGDGK 169
I ++ + +A K+ K+ V + G++ AG G K
Sbjct: 114 RRILERAEKWGRQQATMPKQMRSYEDSAKSKKTVASMIE-RKGEEKPPAGAG----SGSK 168
Query: 170 NGKKNSENDRSA--IVNNGNGYNL----RSNGVVGNVSVNGKENDSVNNGAFDVNRLQKK 223
K +E ++A ++ + +G RSNG + D + K
Sbjct: 169 KSVKIAEKKKAASELLADSDGMEAPRSPRSNGSPPELG-----EDLIMESRKKFAEKMKG 223
Query: 224 VRNKGGNGKKTDAVVTKAEPKKVV--KKNRVWDEKPVETKLDFTDHVDIDGDADKDRKVD 281
GG G K + + P++ K+ RVWD + ++D D +D K D
Sbjct: 224 GSGGGGKGSKLEKQKSPKSPQQPQKGKQMRVWD---LGGNTKDLPNLDRSKDRPEDVKSD 280
Query: 282 YLAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKKGWFSSMFQSIAGKANLE 341
+ D+I S D D++ KP + +G SMF+ + G NL
Sbjct: 281 F---------TPNDQIIGSMRGGIRDLAVDSSRGGKKPSSSSRGGMFSMFKGLVGSKNLT 331
Query: 342 KSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALV 401
+ D++PAL L+D L+ KNVA +IA+KLC+SVA LEG+ + +F I++TV+ + +ALV
Sbjct: 332 RDDMQPALDKLRDHLIGKNVASDIAQKLCDSVAGKLEGRVIGTFDTIATTVRNTLTEALV 391
Query: 402 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAAC 461
+IL+P+R +DILRD AK +P+V+ F GVNGVGKSTNLAK+ +WL ++N++V++AAC
Sbjct: 392 QILSPKRRVDILRDCLEAKRAGRPFVMSFCGVNGVGKSTNLAKICFWLIENNLSVLIAAC 451
Query: 462 DTFRSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAVVAKEAIQEASRNGS 508
DTFR+GAVEQLRTH R L + ++EKGY KD A +A EAI+ A+ +
Sbjct: 452 DTFRAGAVEQLRTHMRHLNALHPAERHGGRSMVQLYEKGYGKDAAGIAMEAIRYANDSKI 511
Query: 509 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 568
DVVL+DTAGRMQDNEPLMRAL+KLI +N PDLVLFVGEALVGN+AVDQL KFNQ LAD S
Sbjct: 512 DVVLIDTAGRMQDNEPLMRALAKLIKVNEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 571
Query: 569 TSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKT 628
+S P +IDGI+LTKFDTIDDKVGAA+SM YI+G P++FVG GQ+YTDLK LN K++V
Sbjct: 572 SSERPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNAKAVVHA 631
Query: 629 LL 630
L+
Sbjct: 632 LM 633
>ref|NP_080406.1| signal recognition particle receptor ('docking protein') [Mus
musculus] gi|47117310|sp|Q9DBG7|SRPR_MOUSE Signal
recognition particle receptor alpha subunit (SR-alpha)
(Docking protein alpha) (DP-alpha)
gi|26332409|dbj|BAC29922.1| unnamed protein product [Mus
musculus] gi|12836553|dbj|BAB23706.1| unnamed protein
product [Mus musculus]
Length = 636
Score = 432 bits (1112), Expect = e-119
Identities = 276/672 (41%), Positives = 390/672 (57%), Gaps = 80/672 (11%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IF++GGL+LW + ++ G P++ LIRS LL+ER G +S+ ++A +LK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHEA----LTLK 55
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVY-------------DPTRTVYR 107
+ N LVFV +Q+IL L YVD L+ V R F Y + T
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEIFKQLKIEAEARA-------EDLKKSNPVIVGGNRKQQVTWKGDGSDGK-KNGSAG 159
DF + ++ + ++ RA ED +K+ + + + +G+ + K KN
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPV-----RSMIETRGEKTKEKAKNNKKR 170
Query: 160 GGLKNDGDGKNG-KKNSENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVN 218
G K DG K + ++S + G EN ++ +
Sbjct: 171 GAKKEGSDGTLATSKTAPAEKSGL-------------------SAGPENGELSKEEL-IR 210
Query: 219 RLQKKVRNKGGNGKKTDAVVTKAE-PKKVVKK-NRVWDEKPVETK--LDFTDHVDIDGDA 274
R +++ K G G + TK++ PK+ KK RVW+ K LD++ +G
Sbjct: 211 RKREEFIQKHGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPT-TNGTP 269
Query: 275 DKDRKVDY-LAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKK--KGWFSSMF 331
+ D L + G +D SS DD+ A + +KP A K G M
Sbjct: 270 EAALSEDINLIRGTGPGGQLQDLDCSS-------SDDEGATQNTKPSATKGTLGGMFGML 322
Query: 332 QSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISST 391
+ + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++ST
Sbjct: 323 KGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTST 382
Query: 392 VQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQ 451
V+ A++++LV+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WL +
Sbjct: 383 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 442
Query: 452 HNVNVMMAACDTFRSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAVVAKE 498
+ +V++AACDTFR+GAVEQLRTH RRL + +FEKGY KD A +A E
Sbjct: 443 NGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAME 502
Query: 499 AIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 558
AI A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL
Sbjct: 503 AIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLV 562
Query: 559 KFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLK 618
KFN+ LAD S + TPRLIDGI+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL+
Sbjct: 563 KFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLR 622
Query: 619 KLNVKSIVKTLL 630
LN K++V L+
Sbjct: 623 SLNAKAVVAALM 634
>gb|AAH21839.1| Signal recognition particle receptor ('docking protein') [Mus
musculus]
Length = 636
Score = 432 bits (1112), Expect = e-119
Identities = 276/672 (41%), Positives = 391/672 (58%), Gaps = 80/672 (11%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IF++GGL+LW + ++ G P++ LIRS LL+ER G +S+ ++A +LK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHEA----LTLK 55
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREF-------------SQVYDPTRTVYR 107
+ N LVFV +Q+IL L YVD L+ V R F S + + T
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSASSLLNGTFDFQN 115
Query: 108 DFDEIFKQLKIEAEARA-------EDLKKSNPVIVGGNRKQQVTWKGDGSDGK-KNGSAG 159
DF + ++ + ++ RA ED +K+ + + + +G+ + K KN
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPV-----RSMIETRGEKTKEKAKNNKKR 170
Query: 160 GGLKNDGDGKNG-KKNSENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVN 218
G K DG K + ++S + G EN ++ +
Sbjct: 171 GAKKEGSDGTLATSKTAPAEKSGL-------------------SAGPENGELSKEEL-IR 210
Query: 219 RLQKKVRNKGGNGKKTDAVVTKAE-PKKVVKK-NRVWDEKPVETK--LDFTDHVDIDGDA 274
R +++ K G G + TK++ PK+ KK RVW+ K LD++ +G
Sbjct: 211 RKREEFIQKHGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPT-TNGTP 269
Query: 275 DKDRKVDY-LAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKK--KGWFSSMF 331
+ D L + G +D SS DD+ A + +KP A K G M
Sbjct: 270 EAALSEDINLIRGTGPGGQLQDLDCSS-------SDDEGATQNTKPSATKGTLGGMFGML 322
Query: 332 QSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISST 391
+ + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++ST
Sbjct: 323 KGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTST 382
Query: 392 VQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQ 451
V+ A++++LV+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WL +
Sbjct: 383 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 442
Query: 452 HNVNVMMAACDTFRSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAVVAKE 498
+ +V++AACDTFR+GAVEQLRTH RRL + +FEKGY KD A +A E
Sbjct: 443 NGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAME 502
Query: 499 AIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 558
AI A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL
Sbjct: 503 AIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLV 562
Query: 559 KFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLK 618
KFN+ LAD S + TPRLIDGI+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL+
Sbjct: 563 KFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLR 622
Query: 619 KLNVKSIVKTLL 630
LN K++V L+
Sbjct: 623 SLNAKAVVAALM 634
>ref|XP_235989.3| PREDICTED: similar to signal recognition particle receptor (docking
protein) [Rattus norvegicus]
Length = 636
Score = 432 bits (1111), Expect = e-119
Identities = 276/672 (41%), Positives = 390/672 (57%), Gaps = 80/672 (11%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IF++GGL+LW + ++ G P++ LIRS LL+ER G +S+ ++A +LK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHEA----LTLK 55
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVY-------------DPTRTVYR 107
+ N LVFV +Q+IL L YVD L+ V R F Y + T
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEIFKQLKIEAEARA-------EDLKKSNPVIVGGNRKQQVTWKGDGSDGK-KNGSAG 159
DF + ++ + ++ RA ED +K+ + + + +G+ + K KN
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPV-----RSMIETRGEKTKEKAKNNKKK 170
Query: 160 GGLKNDGDGKNG-KKNSENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVN 218
G K DG K + ++S + G EN ++ +
Sbjct: 171 GSKKEGSDGPLATSKTAPAEKSGL-------------------PVGPENGELSKEEL-IR 210
Query: 219 RLQKKVRNKGGNGKKTDAVVTKAE-PKKVVKK-NRVWDEKPVETK--LDFTDHVDIDGDA 274
R +++ K G G + TK++ PK+ KK RVW+ K LD++ +G
Sbjct: 211 RKREEFIQKHGKGLDKSSKSTKSDIPKEKGKKAPRVWELGGCANKEVLDYSTPT-TNGTP 269
Query: 275 DKDRKVDY-LAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKK--KGWFSSMF 331
+ D L + G +D SS DD+ A + +KP A K G M
Sbjct: 270 EAALSEDINLIRGTGPGGQLQDLDCSS-------SDDEGATQNTKPSATKGTLGGMFGML 322
Query: 332 QSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISST 391
+ + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++ST
Sbjct: 323 KGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTST 382
Query: 392 VQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQ 451
V+ A++++LV+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WL +
Sbjct: 383 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 442
Query: 452 HNVNVMMAACDTFRSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAVVAKE 498
+ +V++AACDTFR+GAVEQLRTH RRL + +FEKGY KD A +A E
Sbjct: 443 NGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAME 502
Query: 499 AIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 558
AI A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL
Sbjct: 503 AIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLV 562
Query: 559 KFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLK 618
KFN+ LAD S + TPRLIDGI+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL+
Sbjct: 563 KFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLR 622
Query: 619 KLNVKSIVKTLL 630
LN K++V L+
Sbjct: 623 SLNAKAVVAALM 634
>gb|EAL32559.1| GA15385-PA [Drosophila pseudoobscura]
Length = 621
Score = 431 bits (1109), Expect = e-119
Identities = 269/660 (40%), Positives = 381/660 (56%), Gaps = 70/660 (10%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ ++IFT+GG++LW+ G S I++LIR +LE+R+ S Y ++ A K
Sbjct: 1 MLDFVVIFTKGGVVLWNSQTSGINFS-SCINSLIRGVILEDRNTESKY-FEEDHLAVQFK 58
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYR-----DFDEIFKQ 115
N+L LV+ AV+Q+++ L Y+D LA ++ F + + + R DFD F+
Sbjct: 59 --LDNELDLVYAAVFQKVIKLNYLDAFLADMQFAFKEKFGSIPALERLGSEYDFDGEFRS 116
Query: 116 LKIEAEARAEDLKKSNPVIVGGNRKQQVTWKGDGSDGKKNGSAGGGLKNDGDGKNGKKNS 175
+ AE + K+ + N Q K + +++D + N
Sbjct: 117 VLSAAEEASSKQVKAPKAMRSYNESQ-----------KSKKTIASMIQDDKKPVEKRVNI 165
Query: 176 ENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKGGNGKK-- 233
+ + + + L ++ +EN ++K+R K KK
Sbjct: 166 QESPTQPKSQPSSPPLTKQDII-------QEN-------------RRKLREKLTPTKKAA 205
Query: 234 -TDAVVTKAEPKKVVKKNRVWDEKPVETKLDFTDHVDIDGDADKDRKVDY--LAKEQGES 290
T + + +K KK RVWD + D V +D D V Y ++ E +
Sbjct: 206 DTKSAAKQGASEKAGKKPRVWD-----LGGNSKDAVLLDRSKDSPEDVQYQSISNELVGT 260
Query: 291 MM----DKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKK---GWFSSMFQSIAGKANLEKS 343
M D D +D + EE +++ P KK G S F+ I G + +
Sbjct: 261 MQGVIPDLDVESENDVDSEETSSEEDNVSSQSPALKKNKRGGGLVSYFRGIVGGKIMSLA 320
Query: 344 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRI 403
DL+PAL+ ++D L++KNVA EIA KLC+SVA SLEGK++ +F ++S V+ A+ +LVRI
Sbjct: 321 DLQPALEKMRDHLISKNVASEIAVKLCDSVATSLEGKQVGTFDSVASLVKEALTQSLVRI 380
Query: 404 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDT 463
L+P+R IDI+RD K KPY ++F GVNGVGKSTNLAK+ +WL +++ NV++AACDT
Sbjct: 381 LSPKRRIDIIRDALECKRNGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDT 440
Query: 464 FRSGAVEQLRTHAR-------------RLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDV 510
FR+GAVEQLRTH R R + ++EKGY KD A +A EAI+ A DV
Sbjct: 441 FRAGAVEQLRTHTRHLNALHPPANHNNRTMVQLYEKGYGKDAAGIAMEAIKFAHETKVDV 500
Query: 511 VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTS 570
VLVDTAGRMQDNEPLMR+LSKLI +NNPDLVLFVGEALVGN+AVDQL KFNQ LAD S++
Sbjct: 501 VLVDTAGRMQDNEPLMRSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 560
Query: 571 PTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 630
P +IDGI+LTKFDTIDDKVGAA+SM YI+G P++FVG GQ+Y DLK +NV ++V +L+
Sbjct: 561 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLM 620
>gb|AAH01162.1| Signal recognition particle receptor ('docking protein') [Homo
sapiens] gi|14318624|gb|AAH09110.1| Signal recognition
particle receptor ('docking protein') [Homo sapiens]
gi|15488908|gb|AAH13583.1| Signal recognition particle
receptor ('docking protein') [Homo sapiens]
gi|20455516|sp|P08240|SRPR_HUMAN Signal recognition
particle receptor alpha subunit (SR-alpha) (Docking
protein alpha) (DP-alpha) gi|23308697|ref|NP_003130.2|
signal recognition particle receptor ('docking protein')
[Homo sapiens]
Length = 638
Score = 430 bits (1105), Expect = e-119
Identities = 277/673 (41%), Positives = 388/673 (57%), Gaps = 80/673 (11%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IF++GGL+LW + ++ G P++ LIRS LL+ER G +S+ ++A +LK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHEA----LTLK 55
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVY-------------DPTRTVYR 107
+ N LVFV +Q+IL L YVD L+ V R F Y + T
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEIFKQLKIEAEARA-------EDLKKSNPVIVGGNRKQQVTWKGDGSDGKKNGSAGG 160
DF + ++ + ++ RA ED +K+ + + + +G+ K S
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPV-----RSMIETRGEKPKEKAKNSKKK 170
Query: 161 GLKNDG-DGKNG-KKNSENDRSAI-VNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDV 217
G K +G DG K ++S + V NG L ++
Sbjct: 171 GAKKEGSDGPLATSKPVPAEKSGLPVGPENGVELSKEELI-------------------- 210
Query: 218 NRLQKKVRNKGGNGKKTDAVVTKAE-PKKVVKKN-RVWDEKPVETK--LDFTDHVDIDGD 273
R +++ K G G + TK++ PK+ KK RVW+ K LD++ +G
Sbjct: 211 RRKREEFIQKHGRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGT 269
Query: 274 ADKDRKVDY-LAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKK--GWFSSM 330
+ D L + G +D SS DD+ A +KP A K G M
Sbjct: 270 PEAALSEDINLIRGTGSGGQLQDLDCSSS------DDEGAAQNSTKPSATKGTLGGMFGM 323
Query: 331 FQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISS 390
+ + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S
Sbjct: 324 LKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTS 383
Query: 391 TVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQ 450
TV+ A++++LV+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WL
Sbjct: 384 TVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLL 443
Query: 451 QHNVNVMMAACDTFRSGAVEQLRTHARRLQ-------------IPIFEKGYEKDPAVVAK 497
++ +V++AACDTFR+GAVEQLRTH RRL + +FEKGY KD A +A
Sbjct: 444 ENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAM 503
Query: 498 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 557
EAI A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL
Sbjct: 504 EAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQL 563
Query: 558 SKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 617
KFN+ LAD S + TPRLIDGI+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL
Sbjct: 564 VKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDL 623
Query: 618 KKLNVKSIVKTLL 630
+ LN K++V L+
Sbjct: 624 RSLNAKAVVAALM 636
>emb|CAH91283.1| hypothetical protein [Pongo pygmaeus]
Length = 638
Score = 430 bits (1105), Expect = e-119
Identities = 274/674 (40%), Positives = 386/674 (56%), Gaps = 82/674 (12%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IF++GGL+LW + ++ G P++ LIRS LL+ER G +S+ ++A +LK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHEA----LTLK 55
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVY-------------DPTRTVYR 107
+ N LVFV +Q+IL L YVD L+ V R F Y + T
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTSDFQN 115
Query: 108 DFDEIFKQLKIEAEARA-------EDLKKSNPVIVGGNRKQQVTWKGDGSDGK-KNGSAG 159
DF + ++ + ++ RA ED +K+ + + + +G+ K KN
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPV-----RSMIETRGEKPKEKAKNSKKK 170
Query: 160 GGLKNDGDGKNG-KKNSENDRSAI-VNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDV 217
G K DG K ++S + V NG L + +
Sbjct: 171 GAKKEGSDGPLATSKPVPAEKSGLPVGPENGVELSKEEL--------------------I 210
Query: 218 NRLQKKVRNKGGNGKKTDAVVTKAE-PKKVVKK-NRVWDEKPVETK--LDF-TDHVDIDG 272
R +++ K G G + TK++ PK+ KK RVW+ K LD+ T +
Sbjct: 211 RRKREEFIQKHGRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTTNGTP 270
Query: 273 DADKDRKVDYL-AKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKK--KGWFSS 329
+A ++ + G + D D DD+ A +KP A K G
Sbjct: 271 EAALSEDINLIRGTGPGGQLQDLD--------CSSSDDEGAAQNSTKPSATKGTLGGMFG 322
Query: 330 MFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRIS 389
M + + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++
Sbjct: 323 MLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVT 382
Query: 390 STVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 449
STV+ A++++LV+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WL
Sbjct: 383 STVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWL 442
Query: 450 QQHNVNVMMAACDTFRSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAVVA 496
++ +V++AACDTFR+GAVEQLRTH RRL + +FEKGY KD A +A
Sbjct: 443 LENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKQGGRTMVQLFEKGYGKDAAGIA 502
Query: 497 KEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 556
EAI A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQ
Sbjct: 503 MEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQ 562
Query: 557 LSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTD 616
L KFN+ LAD S + TPRLIDGI+LTKFDTIDDKVGAA+SM Y++ P++FVG GQ+Y D
Sbjct: 563 LVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYVTSKPIVFVGTGQTYCD 622
Query: 617 LKKLNVKSIVKTLL 630
L+ LN K++V L+
Sbjct: 623 LRSLNAKAVVAALM 636
>emb|CAA26945.1| signal recognition particle receptor [Canis sp.]
gi|89066|pir||A24570 signal recognition particle
receptor precursor - dog gi|134891|sp|P06625|SRPR_CANFA
Signal recognition particle receptor alpha subunit
(SR-alpha) (Docking protein alpha) (DP-alpha)
gi|224778|prf||1112224A signal recognition particle
receptor
Length = 638
Score = 429 bits (1104), Expect = e-118
Identities = 276/671 (41%), Positives = 385/671 (57%), Gaps = 76/671 (11%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IF++GGL+LW + ++ G P++ LIRS LL+ER G +S+ ++A +LK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHEA----LTLK 55
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVY-------------DPTRTVYR 107
+ N LVFV +Q+IL L YVD L+ V R F Y + T
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEIFKQLKIEAEARA-------EDLKKSNPVIVGGNRKQQVTWKGDGSDGK-KNGSAG 159
DF + ++ + ++ RA ED +K+ + + + +G+ K KN
Sbjct: 116 DFLRLLREREESSKIRAPTTMKKFEDSEKAKKPV-----RSMIETRGEKPKEKAKNSKKK 170
Query: 160 GGLKNDGDGKNGKKNSENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNR 219
G K DG + G +G+ G EN + + R
Sbjct: 171 GAKKESSDGP-------------LATGKAVPAEKSGLPA-----GPENGVELSKEELIRR 212
Query: 220 LQKKVRNKGGNGKKTDAVVTKAE-PKKVVKK-NRVWDEKPVETK--LDFTDHVDIDGDAD 275
+++ K G G + + TK++ PK+ KK RVW K LD++ +G D
Sbjct: 213 KREEFIQKHGRGLEKSSKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPT-TNGAPD 271
Query: 276 KDRKVDY-LAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKK--KGWFSSMFQ 332
D L + G +D SS DD++ A SKP A K G M +
Sbjct: 272 AAPPEDINLIRGTGPGGQLQDLDCSS------SDDEETAQNASKPSATKGTLGGMFGMLK 325
Query: 333 SIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTV 392
+ G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++STV
Sbjct: 326 GLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTV 385
Query: 393 QAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQH 452
+ A++++LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+++WL ++
Sbjct: 386 KQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLEN 445
Query: 453 NVNVMMAACDTFRSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAVVAKEA 499
+V++AACDTFR+GAVE +RTH RRL + +FEKGY KD A +A EA
Sbjct: 446 GFSVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAMEA 505
Query: 500 IQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 559
I A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL K
Sbjct: 506 IAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVK 565
Query: 560 FNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKK 619
FN+ LAD S + TPRLIDGI+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL+
Sbjct: 566 FNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRS 625
Query: 620 LNVKSIVKTLL 630
LN K++V L+
Sbjct: 626 LNAKAVVAALM 636
>emb|CAA29608.1| unnamed protein product [Homo sapiens]
Length = 638
Score = 428 bits (1101), Expect = e-118
Identities = 280/664 (42%), Positives = 382/664 (57%), Gaps = 62/664 (9%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IF++GGL+LW + ++ G P++ LIRS LL+ER G +S+ ++A +LK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHEA----LTLK 55
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYR------------D 108
+ N LVFV +Q+IL L YVD L+ V R F Y RT + D
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDRLIDDVHRLFRDKY---RTEIQQQSALSLLNGTFD 112
Query: 109 FDEIFKQLKIEAEARAEDLKKSNPVIVGGNRKQQVTWKGDGSDGKKNGSAGGGLKNDGDG 168
F F +L EAE E K P T K K ++ G+
Sbjct: 113 FQNDFLRLLREAE---ESSKIRAPT----------TMKKFEDSEKAKKPVRSMIETRGEK 159
Query: 169 KNGKKNSENDRSAIVNNGNGYNLRSNGVVGNVS--VNGKENDSVNNGAFDVNRLQKKVRN 226
K + + A +G S V S G EN+ + + R +++
Sbjct: 160 PKEKAKNSKKKGAKKEGSDGPLATSKPVPAEKSGLPVGPENEVELSKEELIRRKREEFIQ 219
Query: 227 KGGNGKKTDAVVTKAE-PKKVVKKN-RVWDEKPVETK--LDFTDHVDIDGDADKDRKVDY 282
K G G + TK++ PK+ KK RVW+ K LD++ +G + D
Sbjct: 220 KHGRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDI 278
Query: 283 -LAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKK--GWFSSMFQSIAGKAN 339
L + G +D SS DD+ A +KP A K G M + + G +
Sbjct: 279 NLIRGTGSGGQLQDLDCSSS------DDEGAAQTLTKPSATKGTLGGMFGMLKGLVGSKS 332
Query: 340 LEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDA 399
L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++STV+ A++++
Sbjct: 333 LSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQES 392
Query: 400 LVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMA 459
LV+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WL ++ +V++A
Sbjct: 393 LVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIA 452
Query: 460 ACDTFRSGAVEQLRTHARRLQ-------------IPIFEKGYEKDPAVVAKEAIQEASRN 506
ACDTFR+GAVEQLRTH RRL + +FEKGY KD A +A EAI A
Sbjct: 453 ACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQ 512
Query: 507 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 566
G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+ LAD
Sbjct: 513 GFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAD 572
Query: 567 LSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIV 626
S + TPRLIDGI+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL+ LN K++V
Sbjct: 573 HSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVV 632
Query: 627 KTLL 630
L+
Sbjct: 633 AALM 636
>emb|CAG00952.1| unnamed protein product [Tetraodon nigroviridis]
Length = 648
Score = 428 bits (1101), Expect = e-118
Identities = 275/672 (40%), Positives = 374/672 (54%), Gaps = 68/672 (10%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGS-PIDTLIRSCLLEERSGASSYNYDAPGAAYSL 59
ML+ IF++GG++LW G + P++ LIRS +L+ERSG +S+ ++A +L
Sbjct: 1 MLDFFTIFSKGGIVLWCFQGAGVTQSFTGPVNALIRSVILQERSGNNSFTHEA----LTL 56
Query: 60 KWTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYR----------DF 109
K+ N+ L+FV +Q+IL L YVD L+ ++ F Y V + +F
Sbjct: 57 KYKLDNEFELLFVVGFQKILTLTYVDKLIDDIQLHFRDRYK-NELVQKGALKFLNRSYEF 115
Query: 110 DEIFKQLKIEAEARAEDLKKSNPVIVGGNRKQQVTWKGD-GSDGKKNGSAGGGLKNDGDG 168
++ F QL EAE ++ + + K Q T K + G G G KN
Sbjct: 116 EDDFSQLLREAEYSSKARSPALMRTFKESEKSQKTVKSMIETKGGDKGKDPVGKKN---- 171
Query: 169 KNGKKNSENDRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKG 228
KN KK +E +++ + + + NG N G +QKK
Sbjct: 172 KNAKKEAELEKAEHHKSSSSAKMVENG---------------NQGLTAEEIMQKKREEFF 216
Query: 229 GNGKKTDAVVTKAEPKKVV---KKNRVWDEKPVETK-LDFTDHV------DIDGDADKDR 278
T T PK KK RVWD +K LD+++ D D +A D
Sbjct: 217 SKRMVTTTAKTSKSPKPQKPREKKMRVWDMSGTSSKNLDYSERNGDGSANDGDHEAQSDP 276
Query: 279 KVDYLAKEQGESMMDKDEIFSSDSEDEEDDDDDN----AGKKSKPDAKKKGWFSSMF--- 331
Q SM K ++ S D + E+D+ + K SKP +KK G F MF
Sbjct: 277 VGPVTEGMQLSSM--KGDLLSVDYDSSEEDEVEEERVVVSKTSKPTSKKTGGFGGMFGML 334
Query: 332 QSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISST 391
+ + G NL + D+E L +KD L+ KNVA +I+ +LC+SVA LEGK + +FT ++ST
Sbjct: 335 KGLVGSKNLTREDMESVLDKMKDHLIAKNVAADISAQLCDSVAKKLEGKVMGTFTTVAST 394
Query: 392 VQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQ 451
V+ A++D+LV QR+P+V+ F GVNGVGKSTNLAK+++WL +
Sbjct: 395 VKQALQDSLVXXXXXXXXXXXXXXXXXXXSQRRPFVITFCGVNGVGKSTNLAKISFWLIE 454
Query: 452 HNVNVMMAACDTFRSGAVEQLRTHARRLQ-------------IPIFEKGYEKDPAVVAKE 498
+ V++AACDTFR+GAVEQLRTH RRL + ++EKGY KD A +A E
Sbjct: 455 NGFTVLIAACDTFRAGAVEQLRTHQRRLNSLHPPERHGGRPMVQLYEKGYGKDAAGIAME 514
Query: 499 AIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 558
AI A DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL
Sbjct: 515 AIAYARNQAFDVVLVDTAGRMQDNAPLMTALAKLIAVNMPDLVLFVGEALVGNEAVDQLV 574
Query: 559 KFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLK 618
KFNQ LAD S S PRLIDGI+LTKFDTIDDKVGAA+SM YI+G P++FVG GQ+Y DL+
Sbjct: 575 KFNQALADHSMSDRPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYNDLR 634
Query: 619 KLNVKSIVKTLL 630
LN +++V L+
Sbjct: 635 NLNARAVVSALM 646
>emb|CAG33306.1| SRPR [Homo sapiens]
Length = 638
Score = 426 bits (1094), Expect = e-117
Identities = 276/673 (41%), Positives = 387/673 (57%), Gaps = 80/673 (11%)
Query: 1 MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60
ML+ IF++GGL+LW + ++ G P++ LIRS LL+ER G +S+ ++A +LK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHEA----LTLK 55
Query: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVY-------------DPTRTVYR 107
+ N LVFV +Q+IL L YVD L+ V R F Y + T
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEIFKQLKIEAEARA-------EDLKKSNPVIVGGNRKQQVTWKGDGSDGKKNGSAGG 160
DF + ++ + ++ RA ED +K+ + + + +G+ K S
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPV-----RSMIETRGEKPKEKAKNSKKK 170
Query: 161 GLKNDG-DGKNG-KKNSENDRSAI-VNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDV 217
G K +G DG K ++S + V NG L ++
Sbjct: 171 GAKKEGSDGPLATSKPVPAEKSGLPVGPENGVELSKEELI-------------------- 210
Query: 218 NRLQKKVRNKGGNGKKTDAVVTKAE-PKKVVKKN-RVWDEKPVETK--LDFTDHVDIDGD 273
R +++ K G G + TK++ PK+ KK RVW+ K LD++ +G
Sbjct: 211 RRKREEFIQKHGRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGT 269
Query: 274 ADKDRKVDY-LAKEQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKK--GWFSSM 330
+ D L + G +D SS DD+ A +KP A K G M
Sbjct: 270 PEAALSEDINLIRGTGSGGQLQDLDCSSS------DDEGAAQNSTKPSATKGTLGGMFGM 323
Query: 331 FQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISS 390
+ + G +L + D+E L ++D L+ KNVA +IA +L ESVA LEGK + +F+ ++S
Sbjct: 324 LKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLWESVANKLEGKVMGTFSTVTS 383
Query: 391 TVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQ 450
TV+ A++++LV+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WL
Sbjct: 384 TVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLL 443
Query: 451 QHNVNVMMAACDTFRSGAVEQLRTHARRLQ-------------IPIFEKGYEKDPAVVAK 497
++ +V++AACDTFR+GAVEQLRTH RRL + +FEKGY KD A +A
Sbjct: 444 ENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAM 503
Query: 498 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 557
EAI A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL
Sbjct: 504 EAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQL 563
Query: 558 SKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 617
KFN+ LAD S + TPRLIDGI+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL
Sbjct: 564 VKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDL 623
Query: 618 KKLNVKSIVKTLL 630
+ LN K++V L+
Sbjct: 624 RSLNAKAVVAALM 636
>ref|XP_546411.1| PREDICTED: similar to signal recognition particle receptor [Canis
familiaris]
Length = 763
Score = 401 bits (1030), Expect = e-110
Identities = 261/631 (41%), Positives = 359/631 (56%), Gaps = 75/631 (11%)
Query: 41 ERSGASSYNYDAPGAAYSLKWTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVY- 99
ER G +S+ ++A +LK+ N LVFV +Q+IL L YVD L+ V R F Y
Sbjct: 165 ERGGNNSFTHEA----LTLKYKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYR 220
Query: 100 ------------DPTRTVYRDFDEIFKQLKIEAEARA-------EDLKKSNPVIVGGNRK 140
+ T DF + ++ + ++ RA ED +K+ + +
Sbjct: 221 TEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPV-----R 275
Query: 141 QQVTWKGDGSDGK-KNGSAGGGLKNDGDGKNGKKNSENDRSAIVNNGNGYNLRSNGVVGN 199
+ +G+ K KN G K DG + G +G+
Sbjct: 276 SMIETRGEKPKEKAKNSKKKGAKKESSDGP-------------LATGKAVPAEKSGLPA- 321
Query: 200 VSVNGKENDSVNNGAFDVNRLQKKVRNKGGNGKKTDAVVTKAE-PKKVVKK-NRVWDEKP 257
G EN + + R +++ K G G + + TK++ PK+ KK RVW
Sbjct: 322 ----GPENGVELSKEELIRRKREEFIQKHGRGLEKSSKSTKSDAPKEKGKKAPRVWALGG 377
Query: 258 VETK--LDFTDHVDIDGDADKDRKVDY-LAKEQGESMMDKDEIFSSDSEDEEDDDDDNAG 314
K LD++ +G D D L + G +D SS DD++ A
Sbjct: 378 CANKEVLDYSAPT-TNGAPDAAPPEDINLIRGTGPGGQLQDLDCSS------SDDEETAQ 430
Query: 315 KKSKPDAKK--KGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCES 372
SKP A K G M + + G +L + D+E L ++D L+ KNVA +IA +LCES
Sbjct: 431 NASKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCES 490
Query: 373 VAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVG 432
VA LEGK + +F+ ++STV+ A++++LV+IL P+R +D+LRD+ A+ ++PYVV F G
Sbjct: 491 VANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCG 550
Query: 433 VNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQLRTHARRL------------- 479
VNGVGKSTNLAK+++WL ++ +V++AACDTFR+GAVEQLRTH RRL
Sbjct: 551 VNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHAGRT 610
Query: 480 QIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 539
+ +FEKGY KD A +A EAI A G DVVLVDTAGRMQDN PLM AL+KLI +N PD
Sbjct: 611 MVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPD 670
Query: 540 LVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVY 599
LVLFVGEALVGN+AVDQL KFN+ LAD S + TPRLIDGI+LTKFDTIDDKVGAA+SM Y
Sbjct: 671 LVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTY 730
Query: 600 ISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 630
I+ P++FVG GQ+Y DL+ LN K++V L+
Sbjct: 731 ITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 761
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.133 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,072,893,932
Number of Sequences: 2540612
Number of extensions: 49245211
Number of successful extensions: 358661
Number of sequences better than 10.0: 4498
Number of HSP's better than 10.0 without gapping: 1685
Number of HSP's successfully gapped in prelim test: 3025
Number of HSP's that attempted gapping in prelim test: 281118
Number of HSP's gapped (non-prelim): 30311
length of query: 630
length of database: 863,360,394
effective HSP length: 134
effective length of query: 496
effective length of database: 522,918,386
effective search space: 259367519456
effective search space used: 259367519456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)
Medicago: description of AC136953.3