BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136840.7 - phase: 0 /pseudo
(638 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 354 6e-96
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 331 5e-89
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 299 2e-79
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 297 8e-79
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 297 8e-79
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 296 1e-78
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 295 2e-78
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 291 4e-77
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 291 4e-77
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 291 6e-77
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 291 6e-77
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 288 3e-76
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 281 5e-74
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 281 5e-74
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 278 4e-73
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 277 9e-73
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 275 4e-72
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 271 6e-71
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 266 1e-69
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 265 3e-69
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 354 bits (908), Expect = 6e-96
Identities = 176/400 (44%), Positives = 253/400 (63%)
Query: 235 ALNKKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISD 294
A K +V +A+ S +KAPGPDG+ +F++Q VG V F T S +D
Sbjct: 291 AFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTND 350
Query: 295 TLIALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRST 354
L+ LI KV P + FRP+SLCN+++KIITK++V RL+ +++ +IGP Q+SF+PGR +
Sbjct: 351 ALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLS 410
Query: 355 TDNAIVLQEVIHYMRISKKKKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIM 414
DN +++QE +H MR K +KG++ K+DLEKA+D V WDFL+ L G + IM
Sbjct: 411 IDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIM 470
Query: 415 HCVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPI 474
VT S S+LWNG R F P GLRQGDPLSPYLF+LC+E+L I +V + W+PI
Sbjct: 471 AGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPI 530
Query: 475 HVSNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGV 534
VS G KLSH+ FADD++LF +A+ Q+R IR + +RF + SG K++L KS+ F+S V
Sbjct: 531 AVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNV 590
Query: 535 TQDKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKP 594
+++ ++ SGI CT L KYLG PI++ R K F +++++ RLA W+ + L+
Sbjct: 591 SREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLA 650
Query: 595 GRLALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
GR+ L VLSSI + M LP S D +D+ +R F+W
Sbjct: 651 GRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLW 690
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 331 bits (848), Expect = 5e-89
Identities = 162/397 (40%), Positives = 245/397 (60%), Gaps = 17/397 (4%)
Query: 238 KKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLI 297
+ +V A+ S +KAPGPDG+ +F++Q VG+ V F + S +D L+
Sbjct: 246 RDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESVSKFVMEFFESGVLPKSTNDVLL 305
Query: 298 ALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDN 357
L+ KV P FRP+SLCN+++KIITK++V RL+ +++ +IGP Q+SF+PGR + DN
Sbjct: 306 VLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVISKLIGPAQASFIPGRLSFDN 365
Query: 358 AIVLQEVIHYMRISKKKKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCV 417
+V+QE +H MR K +KG++ K+DLEKA+D + WDFL L G + IK IM CV
Sbjct: 366 IVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIMECV 425
Query: 418 TSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVS 477
S+LWNG + F P GLRQGDP+SPYLF+LC+E+L I AV +G W+ I +S
Sbjct: 426 AGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISIS 485
Query: 478 NPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQD 537
GPK+SH+ FADD++LF +A+ Q K++L KS+ F+S+ V++D
Sbjct: 486 QGGPKVSHVCFADDLILFAEASVAQ-----------------KVSLEKSKIFFSNNVSRD 528
Query: 538 KINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRL 597
+T+ +GI T L KYLG P+++ R K F +++++ RL+ W+++ L+ GR+
Sbjct: 529 LEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRI 588
Query: 598 ALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
L VL SI + M LP S+ + +D+V+RNF+W
Sbjct: 589 TLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLW 625
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 299 bits (766), Expect = 2e-79
Identities = 156/397 (39%), Positives = 232/397 (58%), Gaps = 1/397 (0%)
Query: 239 KKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIA 298
++++ AL P KAPGPDGF FF++ ++ DV F T + ++DT+I
Sbjct: 419 EEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVREFFETGEWKEGMNDTVIV 478
Query: 299 LIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNA 358
+IPK + P+ KDFRP+SLCN+IYK++ K LV+RLRP+L II QS+F+PGR TDNA
Sbjct: 479 MIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISETQSAFVPGRMITDNA 538
Query: 359 IVLQEVIHYM-RISKKKKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCV 417
+V E H + + +++ + + A K+DL KA+D V+W FL L GF + K IM CV
Sbjct: 539 LVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGFGNIWRKWIMSCV 598
Query: 418 TSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVS 477
TS +S+ NGN L PF PT GLR+GDPL+PYLF+ + LS+ + + +P+ V
Sbjct: 599 TSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRRRDERQIQPLKVC 658
Query: 478 NPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQD 537
P +SHLLFADD LLF KA Q I++ D + + +G IN + +S+ Q+
Sbjct: 659 RSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSALCPQE 718
Query: 538 KINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRL 597
+ + + ++ + T DK LG P GR K F I ++ +KRL W + L+ G+
Sbjct: 719 RQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSLAGKE 778
Query: 598 ALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
AL V ++ TY M + +P+ C+ +Q+ RNF W
Sbjct: 779 ALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWW 815
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 297 bits (760), Expect = 8e-79
Identities = 155/402 (38%), Positives = 235/402 (57%), Gaps = 8/402 (1%)
Query: 237 NKKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTL 296
+++++ AL P KAPGPDGF F+++ I+ DD+ F +++T
Sbjct: 1043 SEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETA 1102
Query: 297 IALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTD 356
I LIPK + P KDFRPISLCN++YKI++K LV+RLRPIL++++ QS+F+PGR TD
Sbjct: 1103 IVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITD 1162
Query: 357 NAIVLQEVIHYMRISKK-KKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMH 415
NA++ E H+++ +K + Y A+K+DL KA+D V+W+FL + GF +K IM
Sbjct: 1163 NALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWVKWIMA 1222
Query: 416 CVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIH 475
C+T +++ NG L F P+ GLRQGDPLSP+LF+ + LS + V QG+ PIH
Sbjct: 1223 CITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGAMNPIH 1282
Query: 476 VSNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFY---SS 532
+ P + HLLFADD LF KA + Q ++++ + ++ +G IN K + S
Sbjct: 1283 ICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSKCSIMFGQSSP 1342
Query: 533 GVTQDKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLN 592
Q++I IS + DKYLGFP +GR K F + +++ KR+ W K L+
Sbjct: 1343 TAVQNQIKQTLQIS----NSFEDKYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLS 1398
Query: 593 KPGRLALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
G+ L VL ++ Y M + LP+SVC+ + ++ RNF W
Sbjct: 1399 TGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWW 1440
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 297 bits (760), Expect = 8e-79
Identities = 155/402 (38%), Positives = 235/402 (57%), Gaps = 8/402 (1%)
Query: 237 NKKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTL 296
+++++ AL P KAPGPDGF F+++ I+ DD+ F +++T
Sbjct: 1000 SEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETA 1059
Query: 297 IALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTD 356
I LIPK + P KDFRPISLCN++YKI++K LV+RLRPIL++++ QS+F+PGR TD
Sbjct: 1060 IVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITD 1119
Query: 357 NAIVLQEVIHYMRISKK-KKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMH 415
NA++ E H+++ +K + Y A+K+DL KA+D V+W+FL + GF +K IM
Sbjct: 1120 NALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWVKWIMA 1179
Query: 416 CVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIH 475
C+T +++ NG L F P+ GLRQGDPLSP+LF+ + LS + V QG+ PIH
Sbjct: 1180 CITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGAMNPIH 1239
Query: 476 VSNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFY---SS 532
+ P + HLLFADD LF KA + Q ++++ + ++ +G IN K + S
Sbjct: 1240 ICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSKCSIMFGQSSP 1299
Query: 533 GVTQDKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLN 592
Q++I IS + DKYLGFP +GR K F + +++ KR+ W K L+
Sbjct: 1300 TAVQNQIKQTLQIS----NSFEDKYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLS 1355
Query: 593 KPGRLALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
G+ L VL ++ Y M + LP+SVC+ + ++ RNF W
Sbjct: 1356 TGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWW 1397
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 296 bits (758), Expect = 1e-78
Identities = 160/387 (41%), Positives = 227/387 (58%), Gaps = 7/387 (1%)
Query: 252 KAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIALIPKVDPPLTYKD 311
KAPGPDG F+KQ IVG+DV F +SH S++ T I +IPK+ P T D
Sbjct: 65 KAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPKIQNPQTLSD 124
Query: 312 FRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAIVLQEVIHYMRIS 371
+RPI+LCN++YK+I+K +V+RL+ LN+I+ Q++F+PGR DN ++ E++H +++
Sbjct: 125 YRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVR 184
Query: 372 KK-KKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVTSSSFSILWNGNR 430
K+ K Y+A K D+ KA+D V WDFL + + FGF D I IM V S +S+L NG+
Sbjct: 185 KRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSP 244
Query: 431 LPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSNPGPKLSHLLFAD 490
PT G+RQGDPLSPYLFILC + LS I G + + N P ++HL FAD
Sbjct: 245 HGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFAD 304
Query: 491 DVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSS---GVTQDKINTLTSISG 547
D L F +AN + ++D+FD + +SG KIN+ KS + S G TQ ++ TL +I
Sbjct: 305 DSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPN 364
Query: 548 IRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALASFVLSSI 607
KYLG P GR KK F +IID++++R ASW K L+ G+ L V ++
Sbjct: 365 ---QGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAM 421
Query: 608 STYYMQINWLPQSVCDNIDQVTRNFIW 634
Y M LPQ + I+ + NF W
Sbjct: 422 PVYAMSCFKLPQGIVSEIESLLMNFWW 448
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 295 bits (756), Expect = 2e-78
Identities = 159/396 (40%), Positives = 226/396 (56%), Gaps = 1/396 (0%)
Query: 240 KVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIAL 299
++ AL S KAPGPDGF FF Y I+ DV S F+ S P +++T + L
Sbjct: 373 EIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTL 432
Query: 300 IPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAI 359
IPK+ P D+RPI+LCN+ YKI+ K+L RL+P L+ +I +QS+F+PGR+ DN +
Sbjct: 433 IPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVL 492
Query: 360 VLQEVIHYMRISKKKKGY-VAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVT 418
+ E++H++R+S KK +A K D+ KA+D + W+FL+ L GF D I+ +M CV
Sbjct: 493 ITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVC 552
Query: 419 SSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSN 478
+ S+S L NG+ P+ GLRQGDPLSPYLFILC E LS A ++G I V+
Sbjct: 553 TVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVAR 612
Query: 479 PGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDK 538
P+++HLLFADD + F K N T + ++ ++ SG INL KS +SS QD
Sbjct: 613 GSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDI 672
Query: 539 INTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLA 598
+ I + KYLG P GR K+ F I+D++++R SW + L+ G+
Sbjct: 673 KRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQI 732
Query: 599 LASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
L VLSS+ +Y M LP S+C I V F W
Sbjct: 733 LLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWW 768
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 291 bits (745), Expect = 4e-77
Identities = 157/384 (40%), Positives = 226/384 (57%), Gaps = 1/384 (0%)
Query: 252 KAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIALIPKVDPPLTYKD 311
KAPGPDG F+K IVG DV F TS+ SI+ T I +IPK+ P T D
Sbjct: 806 KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 865
Query: 312 FRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAIVLQEVIHYMRIS 371
+RPI+LCN++YKII+K LV RL+ L+ I+ Q++F+PGR DN ++ E++H ++
Sbjct: 866 YRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTR 925
Query: 372 KK-KKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVTSSSFSILWNGNR 430
K+ + Y+A K D+ KA+D V W+FL + + FGF +T IK IM V S ++S+L NG
Sbjct: 926 KRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIP 985
Query: 431 LPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSNPGPKLSHLLFAD 490
+P G+RQGDPLSPYLFILC + L+ I N V +G I + N P ++HL FAD
Sbjct: 986 HGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFAD 1045
Query: 491 DVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDKINTLTSISGIRC 550
D L F ++N + ++D+FD + +SG KIN+ KS + S V N L +I GI+
Sbjct: 1046 DSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQS 1105
Query: 551 TTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALASFVLSSISTY 610
KYLG P GR K+ F +II++++KR +SW K L+ G+ + V S+ Y
Sbjct: 1106 HGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVY 1165
Query: 611 YMQINWLPQSVCDNIDQVTRNFIW 634
M LP ++ I+ + NF W
Sbjct: 1166 AMSCFKLPLNIVSEIEALLMNFWW 1189
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 291 bits (745), Expect = 4e-77
Identities = 157/384 (40%), Positives = 226/384 (57%), Gaps = 1/384 (0%)
Query: 252 KAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIALIPKVDPPLTYKD 311
KAPGPDG F+K IVG DV F TS+ SI+ T I +IPK+ P T D
Sbjct: 826 KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 885
Query: 312 FRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAIVLQEVIHYMRIS 371
+RPI+LCN++YKII+K LV RL+ L+ I+ Q++F+PGR DN ++ E++H ++
Sbjct: 886 YRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTR 945
Query: 372 KK-KKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVTSSSFSILWNGNR 430
K+ + Y+A K D+ KA+D V W+FL + + FGF +T IK IM V S ++S+L NG
Sbjct: 946 KRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIP 1005
Query: 431 LPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSNPGPKLSHLLFAD 490
+P G+RQGDPLSPYLFILC + L+ I N V +G I + N P ++HL FAD
Sbjct: 1006 HGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFAD 1065
Query: 491 DVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDKINTLTSISGIRC 550
D L F ++N + ++D+FD + +SG KIN+ KS + S V N L +I GI+
Sbjct: 1066 DSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQS 1125
Query: 551 TTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALASFVLSSISTY 610
KYLG P GR K+ F +II++++KR +SW K L+ G+ + V S+ Y
Sbjct: 1126 HGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVY 1185
Query: 611 YMQINWLPQSVCDNIDQVTRNFIW 634
M LP ++ I+ + NF W
Sbjct: 1186 AMSCFKLPLNIVSEIEALLMNFWW 1209
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 291 bits (744), Expect = 6e-77
Identities = 157/384 (40%), Positives = 222/384 (56%), Gaps = 1/384 (0%)
Query: 252 KAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIALIPKVDPPLTYKD 311
KAPGPDG F+K IVG DV F TS PSI+ T I +IPK+ P T D
Sbjct: 826 KAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSD 885
Query: 312 FRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAIVLQEVIHYMRIS 371
+RPI+LCN++YK+I+K LV+RL+ LN+I+ Q++F+PGR DN ++ EV+H +++
Sbjct: 886 YRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVR 945
Query: 372 KK-KKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVTSSSFSILWNGNR 430
K+ K Y+A K D+ KA+D V WDFL + + FGF + I IM V S +S+L NG+
Sbjct: 946 KRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSP 1005
Query: 431 LPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSNPGPKLSHLLFAD 490
PT G+RQGDPLSPYLFILC + LS IN G + + N P ++HL FAD
Sbjct: 1006 HGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFAD 1065
Query: 491 DVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDKINTLTSISGIRC 550
D L F +AN + ++D+FD + +SG KIN+ KS + S V + L I I
Sbjct: 1066 DSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPN 1125
Query: 551 TTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALASFVLSSISTY 610
KYLG P GR KK F +IID+++KR ++W + L+ G+ + V ++ Y
Sbjct: 1126 QGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVY 1185
Query: 611 YMQINWLPQSVCDNIDQVTRNFIW 634
M LP+ + I+ + NF W
Sbjct: 1186 AMSCFKLPKGIVSEIESLLMNFWW 1209
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 291 bits (744), Expect = 6e-77
Identities = 157/384 (40%), Positives = 222/384 (56%), Gaps = 1/384 (0%)
Query: 252 KAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIALIPKVDPPLTYKD 311
KAPGPDG F+K IVG DV F TS PSI+ T I +IPK+ P T D
Sbjct: 600 KAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSD 659
Query: 312 FRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAIVLQEVIHYMRIS 371
+RPI+LCN++YK+I+K LV+RL+ LN+I+ Q++F+PGR DN ++ EV+H +++
Sbjct: 660 YRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVR 719
Query: 372 KK-KKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVTSSSFSILWNGNR 430
K+ K Y+A K D+ KA+D V WDFL + + FGF + I IM V S +S+L NG+
Sbjct: 720 KRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSP 779
Query: 431 LPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSNPGPKLSHLLFAD 490
PT G+RQGDPLSPYLFILC + LS IN G + + N P ++HL FAD
Sbjct: 780 HGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFAD 839
Query: 491 DVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDKINTLTSISGIRC 550
D L F +AN + ++D+FD + +SG KIN+ KS + S V + L I I
Sbjct: 840 DSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPN 899
Query: 551 TTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALASFVLSSISTY 610
KYLG P GR KK F +IID+++KR ++W + L+ G+ + V ++ Y
Sbjct: 900 QGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVY 959
Query: 611 YMQINWLPQSVCDNIDQVTRNFIW 634
M LP+ + I+ + NF W
Sbjct: 960 AMSCFKLPKGIVSEIESLLMNFWW 983
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 288 bits (738), Expect = 3e-76
Identities = 159/399 (39%), Positives = 224/399 (55%), Gaps = 1/399 (0%)
Query: 237 NKKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTL 296
N ++V A+ S KAPGPDGF F+ Y HI+ DV F + +F +++T
Sbjct: 324 NDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETH 383
Query: 297 IALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTD 356
I LIPK P D+RPI+LCNI YKI+ K++ R++ IL +I QS+F+PGR +D
Sbjct: 384 IRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISD 443
Query: 357 NAIVLQEVIHYMRISKKKKGY-VAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMH 415
N ++ EV+H++R S KK +A K D+ KA+D V WDFL+ L FGF I ++
Sbjct: 444 NVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLE 503
Query: 416 CVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIH 475
CVTS S+S L NG PT GLRQGDPLSP LFILC E LS A + +
Sbjct: 504 CVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVR 563
Query: 476 VSNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVT 535
VS GP+++HLLFADD + F+K++ + ++ R+ K SG IN HKS +SS
Sbjct: 564 VSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTP 623
Query: 536 QDKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPG 595
+ + I IR KYLG P GR K+ F IIDK++++ SW ++ L++ G
Sbjct: 624 RSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAG 683
Query: 596 RLALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
+ + VL+S+ Y M LP ++C I + F W
Sbjct: 684 KQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWW 722
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 281 bits (719), Expect = 5e-74
Identities = 149/396 (37%), Positives = 221/396 (55%), Gaps = 1/396 (0%)
Query: 240 KVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIAL 299
+++ A+ P K+PGPDGF F+++ + D+ F T ++DT I L
Sbjct: 1166 EISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVL 1225
Query: 300 IPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAI 359
IPK + P+ +DFRPISLCN++YK+++K LV+RLRPIL++++ QS+F+ GR TDNA+
Sbjct: 1226 IPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNAL 1285
Query: 360 VLQEVIHYMRISKKKK-GYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVT 418
+ E H M+ +KK A+K+DL KA+D V+W FL + GF + IM CVT
Sbjct: 1286 LAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVT 1345
Query: 419 SSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSN 478
S + + +NG L F PT GLRQGDPL P+LF+ + LS + V Q S P V
Sbjct: 1346 SVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCR 1405
Query: 479 PGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDK 538
P +SHLLFADD LLF KA+ + ++++ ++ +G IN K T
Sbjct: 1406 AAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAV 1465
Query: 539 INTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLA 598
++ I + D+YLGFP +GR K F + K+ KR+ W L+ G+
Sbjct: 1466 SEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEV 1525
Query: 599 LASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
L V+ +I Y M I LP+SV D++ ++T+NF W
Sbjct: 1526 LIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWW 1561
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 281 bits (719), Expect = 5e-74
Identities = 153/398 (38%), Positives = 218/398 (54%), Gaps = 1/398 (0%)
Query: 238 KKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLI 297
+++V AL KAPG DG IF+K++ + GD V + + +DT++
Sbjct: 778 REEVWVALKDMGDLKAPGADGIPAIFYKKFLSLAGDKVKDEVLAVLNGGDMPQGWNDTVV 837
Query: 298 ALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDN 357
LIPK P T KD RPISLCN+ YK+I+KV+V+RL+ +L II P QS+F+P R T N
Sbjct: 838 VLIPKTKQPDTLKDLRPISLCNVAYKLISKVIVNRLKVVLLEIISPSQSAFVPRRLITYN 897
Query: 358 AIVLQEVIHYMRISKK-KKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHC 416
++ E+ HY+ KK K G A K+D+ KA+D V WDFLR + GF D + L+M C
Sbjct: 898 VLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMKC 957
Query: 417 VTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHV 476
VTS ++ I NG P GLRQGDPLSPYLFI+C E LS+ + A G E I V
Sbjct: 958 VTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIKV 1017
Query: 477 SNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQ 536
P+++HL FADD L+ +A + +R + + + SG IN KS +S Q
Sbjct: 1018 CRDTPRINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTLQ 1077
Query: 537 DKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGR 596
+ S I ++YLG P+ G+ ++ F +I K+ R+ WQ KLL+K G+
Sbjct: 1078 SDRMEVRSALCINQEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKLLSKAGK 1137
Query: 597 LALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
L V +I TY M L + +CD I+ + + W
Sbjct: 1138 EILVKAVAQAIPTYAMSCFDLTKGLCDEINSMISKWWW 1175
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 278 bits (711), Expect = 4e-73
Identities = 153/403 (37%), Positives = 229/403 (55%), Gaps = 3/403 (0%)
Query: 237 NKKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTL 296
N +++ +A S KAPGPDGF FF+ VG ++ S F +S P+I+ T
Sbjct: 255 NPEEIKSACFSIHADKAPGPDGFSASFFQSNWMTVGPNIVLEIQSFFSSSTLQPTINKTH 314
Query: 297 IALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTD 356
I LIPK+ D+RPI+LC + YKII+K+L RL+PIL II QS+F+P R++ D
Sbjct: 315 ITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIISENQSAFVPKRASND 374
Query: 357 NAIVLQEVIHYMR-ISKKKKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMH 415
N ++ E +HY++ + +K+ ++A K ++ KA+D + WDF++ + + GF T I I+
Sbjct: 375 NVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQ 434
Query: 416 CVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIH 475
C+T+ S+S L NG+ P GLRQGDPLSP+LFI+C E LS A GS +
Sbjct: 435 CITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLR 494
Query: 476 VSNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVT 535
VS P+++HLLFADD + F +++ + + ++ + SG IN KS A S T
Sbjct: 495 VSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKS-AITFSRKT 553
Query: 536 QDKINT-LTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKP 594
D I T I GI+ L KYLG P + GR K+ F I+D++++R SW ++ L+
Sbjct: 554 PDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTA 613
Query: 595 GRLALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIWRDS 637
G+ + VL+S+ TY M L S+C I +F W S
Sbjct: 614 GKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSS 656
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 277 bits (708), Expect = 9e-73
Identities = 149/402 (37%), Positives = 227/402 (56%), Gaps = 9/402 (2%)
Query: 238 KKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLI 297
++++ A+ P K+P PDGF F+++ + D+ + F + ++DT I
Sbjct: 1070 EEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPKGVNDTAI 1129
Query: 298 ALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDN 357
LIPK D P+ KD+RPISLCN++YK+++K LV+RLRPIL++++ QS+F+ GR TDN
Sbjct: 1130 VLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKEQSAFIQGRMITDN 1189
Query: 358 AIVLQEVIHYMRISKKKKGYV-AFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHC 416
A++ E H ++ +KK A+K+DL KA+D V+W FL L GF + IM C
Sbjct: 1190 ALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWVSWIMLC 1249
Query: 417 VTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHV 476
VT+ +S+ +NG L F PT GLRQG+PLSP+LF+ + LS + V Q S P+ +
Sbjct: 1250 VTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLKEKVAQNSLTPLKI 1309
Query: 477 SNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYS----S 532
P +S+LLFADD LLF KA + ++++ +++ +G IN K + S
Sbjct: 1310 CRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILFGEASPS 1369
Query: 533 GVTQDKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLN 592
V++D NTL + D+YLGFP +GR K F + K+ KR+ W L+
Sbjct: 1370 SVSEDIRNTLQ----VERDNFEDRYLGFPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLS 1425
Query: 593 KPGRLALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
G+ L V+ +I Y M + P SV D + ++TRNF W
Sbjct: 1426 SGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWW 1467
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 275 bits (702), Expect = 4e-72
Identities = 150/396 (37%), Positives = 214/396 (53%), Gaps = 1/396 (0%)
Query: 240 KVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIAL 299
+V AAL P KAPGPDG +FF++ I+ D+ +L S FD ++ T I L
Sbjct: 216 EVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICL 275
Query: 300 IPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAI 359
IPK + P + RPISLCN+ YK+I+K+L RL+ +L N+I QS+F+ GR +DN +
Sbjct: 276 IPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNIL 335
Query: 360 VLQEVIHYMRISKK-KKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVT 418
+ QE+ H +R + K ++A K D+ KA+D V W+F+ + L GF + I IM C+T
Sbjct: 336 IAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCIT 395
Query: 419 SSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSN 478
+ + +L NG P GLRQGDPLSPYLFILC E L + I A +Q I V+
Sbjct: 396 TVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVAT 455
Query: 479 PGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDK 538
P P +SHLLFADD L F KAN Q I ++ ++ SG +IN KS + V
Sbjct: 456 PSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSI 515
Query: 539 INTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLA 598
+ I GI + YLG P G K F F+ D++Q R+ W K L+K G+
Sbjct: 516 KADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEV 575
Query: 599 LASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
+ V +++ Y M LP+++ + F W
Sbjct: 576 MIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWW 611
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 271 bits (692), Expect = 6e-71
Identities = 140/396 (35%), Positives = 215/396 (53%)
Query: 239 KKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIA 298
+++ AL KAPGPDGF +F++ + I+ + + N L + D+++
Sbjct: 447 EEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVV 506
Query: 299 LIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNA 358
LIPKV+ FRPISLCN++YKI +KVL +RL+P L +I+ +QS+F+PGR TD+A
Sbjct: 507 LIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSA 566
Query: 359 IVLQEVIHYMRISKKKKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVT 418
+V E +H +R K + A KID+ KA+D V W +L CL GF I +M CV+
Sbjct: 567 LVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVS 626
Query: 419 SSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSN 478
S +++ NG P P+ G+RQGDP+SPYLF+LC E LS ++ G + I
Sbjct: 627 SVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGR 686
Query: 479 PGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDK 538
GP +SHLLFADD + F KA+S ++ +++ + SG KINLHKS F+
Sbjct: 687 HGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAV 746
Query: 539 INTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLA 598
++ S + D YLG P G + F F+ +++ KR+ W ++ L++ G
Sbjct: 747 KISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMET 806
Query: 599 LASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
+ V +I Y M +P S+C+ + + W
Sbjct: 807 MLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWW 842
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 266 bits (681), Expect = 1e-69
Identities = 141/398 (35%), Positives = 214/398 (53%), Gaps = 2/398 (0%)
Query: 239 KKVTAALHSTKPYKAP-GPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLI 297
+++ AL S KAP G DG +F+KQ+ VGDD+ + S +DT++
Sbjct: 887 EEIKKALDSIGDLKAPPGSDGMPALFYKQFWECVGDDIVHEVKDFLGGGEMPDSWNDTVV 946
Query: 298 ALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDN 357
LIPKV P KD RPISLCN++YKI +KVL +RL+P+L+ II P Q +F+P R TDN
Sbjct: 947 VLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDN 1006
Query: 358 AIVLQEVIHYMRISKKKK-GYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHC 416
++ E+ H+++ ++ G+ A K + KA+D V W FL + GF + ++M C
Sbjct: 1007 ILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRVEWGFLEKMMLKLGFDRNWVFIVMKC 1066
Query: 417 VTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHV 476
VTS ++ I NG PT GLRQGDP+SPYLF +C E S+ +N A ++G I V
Sbjct: 1067 VTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFFICAEGFSTLLNAAEERGDLSVIKV 1126
Query: 477 SNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQ 536
P ++HLLFADD LL K + ++++ + + SG IN KS +S + +
Sbjct: 1127 CQNAPSINHLLFADDSLLLLKTDEGSAACLQNVLSLYERCSGETINKEKSSIMFSRNIKE 1186
Query: 537 DKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGR 596
I +KYLG P+ GR K ++ +++ K++ W+ KLL++ G+
Sbjct: 1187 VNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKAKTSSYLKERVWKKIQGWKEKLLSRAGK 1246
Query: 597 LALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
L V +I + M L + +CD I + F W
Sbjct: 1247 DVLIKAVAQAIPAFAMSCFNLTKGLCDEITSLICRFFW 1284
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 265 bits (677), Expect = 3e-69
Identities = 150/396 (37%), Positives = 210/396 (52%), Gaps = 1/396 (0%)
Query: 240 KVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIAL 299
+V AAL P KAPGPDG +FF++ + D+ L S FD ++ T I L
Sbjct: 282 EVRAALFLMHPEKAPGPDGMTALFFQKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICL 341
Query: 300 IPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAI 359
IPK + P + RPISLCN+ YKII+K+L RL+ IL ++I S+F+ GR +DN +
Sbjct: 342 IPKTERPTRMTELRPISLCNVGYKIISKILCQRLKKILPSLISETHSAFVEGRLISDNIL 401
Query: 360 VLQEVIHYMRISKKKKG-YVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHCVT 418
+ QE+ H +R + KG ++A K D+ KA+D V W+F+ L GF + I IM C+T
Sbjct: 402 IAQEMFHGLRTNPSCKGKFMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCIT 461
Query: 419 SSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSN 478
+ + +L NG P GLRQGDPLSPYLFILC E L + I A Q+ I V+
Sbjct: 462 TVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITGIKVAT 521
Query: 479 PGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDK 538
P +SHLLFA+D L F KAN Q I + ++ SG IN KS + V D
Sbjct: 522 ASPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDI 581
Query: 539 INTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLA 598
+ S GI + YLG P G K F F+ D++Q R+ W K L+K G+
Sbjct: 582 KAEIKSALGIHSIGGMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEV 641
Query: 599 LASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
+ V++ + TY M LP+++ + F W
Sbjct: 642 MIKSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFWW 677
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.350 0.156 0.550
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,004,955,143
Number of Sequences: 2540612
Number of extensions: 39871750
Number of successful extensions: 158497
Number of sequences better than 10.0: 1372
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 538
Number of HSP's that attempted gapping in prelim test: 155265
Number of HSP's gapped (non-prelim): 1651
length of query: 638
length of database: 863,360,394
effective HSP length: 134
effective length of query: 504
effective length of database: 522,918,386
effective search space: 263550866544
effective search space used: 263550866544
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 78 (34.7 bits)
Medicago: description of AC136840.7