BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136840.1 + phase: 0 /pseudo
(1308 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 120 4e-25
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 119 5e-25
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 118 1e-24
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 118 1e-24
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 117 2e-24
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 114 2e-23
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 114 2e-23
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 113 4e-23
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 112 6e-23
emb|CAA69775.1| unnamed protein product [Arabidopsis thaliana] g... 111 1e-22
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 111 1e-22
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 111 2e-22
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 110 3e-22
gb|AAX94970.1| retrotransposon protein, putative, unclassified [... 110 4e-22
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 106 5e-21
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 105 1e-20
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 104 2e-20
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 103 3e-20
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 103 4e-20
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 102 7e-20
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 120 bits (300), Expect = 4e-25
Identities = 50/129 (38%), Positives = 83/129 (63%), Gaps = 1/129 (0%)
Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
+P CE + S+ FWWG+++G+RK HW + K+K +GG+GF+ + N A+L++Q
Sbjct: 1179 LPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQ 1238
Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
WR++ N + L + LK +Y+P G + S G N S W++I H E++ K +WR+G+
Sbjct: 1239 AWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHG-LELVKKGIIWRIGN 1297
Query: 931 GRNIRVWKD 939
GR++RVW+D
Sbjct: 1298 GRSVRVWQD 1306
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 119 bits (299), Expect = 5e-25
Identities = 63/165 (38%), Positives = 102/165 (61%), Gaps = 8/165 (4%)
Query: 776 FGRSL-RGGKEILCLLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMISRFWWGSKQGE 834
F +SL +GGKEI+ L+ + +++ + P C ++ S ++ FWW + +
Sbjct: 628 FSKSLSQGGKEIM--LKAVAMAMPVFAMSCFKL----PKTTCTNLASAMADFWWSANDHQ 681
Query: 835 RKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS*CLKGRYFPRG 894
RKIHW+ +++C K+ GG+GFR N A+L+KQ WR+L + L + +K RYFP G
Sbjct: 682 RKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVG 741
Query: 895 DFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
+FL + VG PS+ WRSI+H + +++ + V RVG+G++IRVW D
Sbjct: 742 EFLDSDVGSRPSFGWRSILHGR-DLLCRGLVKRVGNGKSIRVWID 785
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 118 bits (296), Expect = 1e-24
Identities = 68/176 (38%), Positives = 101/176 (56%), Gaps = 8/176 (4%)
Query: 765 EDKTSSVQNIGFGRSL-RGGKEILCLLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMI 823
+D+ ++ F R L +GGKE+L L+ + +++ + P CE++ES +
Sbjct: 735 KDRLKEKLDVWFTRCLSQGGKEVL--LKSVALAMPVFAMSCFKL----PITTCENLESAM 788
Query: 824 SRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS 883
+ FWW S RKIHW + +C K GG+GFR + N A+L+KQ WR+LH + LLS
Sbjct: 789 ASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLS 848
Query: 884 *CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
LK RYF DFL A++ PS+ WRSI+ + E++ K RVGDG ++ VW D
Sbjct: 849 RLLKSRYFDATDFLDAALSQRPSFGWRSILFGR-ELLSKGLQKRVGDGASLFVWID 903
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 118 bits (296), Expect = 1e-24
Identities = 68/176 (38%), Positives = 101/176 (56%), Gaps = 8/176 (4%)
Query: 765 EDKTSSVQNIGFGRSL-RGGKEILCLLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMI 823
+D+ ++ F R L +GGKE+L L+ + +++ + P CE++ES +
Sbjct: 732 KDRLKEKLDVWFTRCLSQGGKEVL--LKSVALAMPVFAMSCFKL----PITTCENLESAM 785
Query: 824 SRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS 883
+ FWW S RKIHW + +C K GG+GFR + N A+L+KQ WR+LH + LLS
Sbjct: 786 ASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLS 845
Query: 884 *CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
LK RYF DFL A++ PS+ WRSI+ + E++ K RVGDG ++ VW D
Sbjct: 846 RLLKSRYFDATDFLDAALSQRPSFGWRSILFGR-ELLSKGLQKRVGDGASLFVWID 900
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 117 bits (294), Expect = 2e-24
Identities = 51/124 (41%), Positives = 77/124 (61%), Gaps = 1/124 (0%)
Query: 816 CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRIL 875
C+ I MI+++WW +++ + K+HW+ +++ K +GG+GFR NLAML+KQGWR++
Sbjct: 1016 CDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLI 1075
Query: 876 HNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIR 935
+ + L S L+ +YFP GD + N SYTWRSI V+ +WRVGDG I
Sbjct: 1076 QDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKG-LRVLQNGMIWRVGDGSKIN 1134
Query: 936 VWKD 939
+W D
Sbjct: 1135 IWAD 1138
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 114 bits (286), Expect = 2e-23
Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 13/161 (8%)
Query: 782 GGKEILC---LLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMISRFWWGSKQGERKIH 838
GGKEIL L +Y + L+ +P CE + ++ FWWG+++G R+ H
Sbjct: 1400 GGKEILIKAVLQAMPVYVMGLFK---------LPESVCEELTKLVRNFWWGAEKGMRRTH 1450
Query: 839 WIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS*CLKGRYFPRGDFLK 898
W D + K GGMGFR F+ N A+L++Q WR+L + L + LK Y+P G +
Sbjct: 1451 WKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLID 1510
Query: 899 ASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
S G N S WR+I + E++ K +WR+G+G+++R+W+D
Sbjct: 1511 TSFGGNASPGWRAIEYG-LELLKKGIIWRIGNGKSVRLWRD 1550
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 114 bits (286), Expect = 2e-23
Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 13/161 (8%)
Query: 782 GGKEILC---LLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMISRFWWGSKQGERKIH 838
GGKEIL L +Y + L+ +P CE + ++ FWWG+++G R+ H
Sbjct: 1357 GGKEILIKAVLQAMPVYVMGLFK---------LPESVCEELTKLVRNFWWGAEKGMRRTH 1407
Query: 839 WIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS*CLKGRYFPRGDFLK 898
W D + K GGMGFR F+ N A+L++Q WR+L + L + LK Y+P G +
Sbjct: 1408 WKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLID 1467
Query: 899 ASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
S G N S WR+I + E++ K +WR+G+G+++R+W+D
Sbjct: 1468 TSFGGNASPGWRAIEYG-LELLKKGIIWRIGNGKSVRLWRD 1507
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 113 bits (283), Expect = 4e-23
Identities = 54/130 (41%), Positives = 82/130 (62%), Gaps = 1/130 (0%)
Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
+P CE +++ I+ WWG + G++K+HW + K +GGMGFR F N AML +Q
Sbjct: 825 IPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQ 884
Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
WR+L + + L S LKGRYFP F +A+ +PS+TWRS++ + E++ K W VGD
Sbjct: 885 CWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGR-ELLAKGVRWGVGD 943
Query: 931 GRNIRVWKDN 940
G+ I+++ DN
Sbjct: 944 GKTIKIFSDN 953
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 112 bits (281), Expect = 6e-23
Identities = 49/130 (37%), Positives = 78/130 (59%), Gaps = 1/130 (0%)
Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
+P + + + FWW S G+RK HW D + K K +GG+GFR ++ N A+L++Q
Sbjct: 1544 LPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQ 1603
Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
WR++ + L + LK +YFP G + S G N S WRSI + +++ K +WRVG+
Sbjct: 1604 AWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYG-LDLLKKGIIWRVGN 1662
Query: 931 GRNIRVWKDN 940
G +IR+W+D+
Sbjct: 1663 GNSIRIWRDS 1672
>emb|CAA69775.1| unnamed protein product [Arabidopsis thaliana]
gi|13449317|ref|NP_085499.1| hypothetical protein
Atmt_p27 [Arabidopsis thaliana]
gi|44888115|sp|P93295|M310_ARATH Hypothetical
mitochondrial protein AtMg00310 (ORF154)
Length = 154
Score = 111 bits (278), Expect = 1e-22
Identities = 52/125 (41%), Positives = 80/125 (63%), Gaps = 2/125 (1%)
Query: 816 CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKV-GGMGFRTFKELNLAMLSKQGWRI 874
C+ + S ++ FWW S + +RKI W+ ++CK+K+ GG+GFR N A+L+KQ +RI
Sbjct: 18 CKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRI 77
Query: 875 LHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNI 934
+H LLS L+ RYFP ++ SVG PSY WRSI+H + E++ + + +GDG +
Sbjct: 78 IHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGR-ELLSRGLLRTIGDGIHT 136
Query: 935 RVWKD 939
+VW D
Sbjct: 137 KVWLD 141
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 111 bits (278), Expect = 1e-22
Identities = 45/130 (34%), Positives = 80/130 (60%), Gaps = 1/130 (0%)
Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
+P CE E ++ FWWG ++GE+K+HWI +++ K +GG+GFR + N A+L++Q
Sbjct: 798 MPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQ 857
Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
WR++ + + L + LK +Y+P G + S TW+ I+H E++ K +WR+GD
Sbjct: 858 AWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHG-LELLKKGLIWRIGD 916
Query: 931 GRNIRVWKDN 940
G ++W+++
Sbjct: 917 GSKTKIWRNH 926
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 111 bits (277), Expect = 2e-22
Identities = 46/129 (35%), Positives = 80/129 (61%), Gaps = 1/129 (0%)
Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
+P CE + + FWWG ++G+RK HW + + + K GG+GFR F+ N A+L++Q
Sbjct: 321 LPESVCEELTKLTRNFWWGVEKGKRKTHWKSWECLTRPKSNGGLGFRDFRLFNQALLARQ 380
Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
WR++ N + L + LK +YFP G + S G N S W++I + ++ + +WR+G+
Sbjct: 381 AWRLIVNPDSLCARVLKAKYFPNGSLVDTSFGGNASPVWKAIEYG-LSLLKEGIIWRIGN 439
Query: 931 GRNIRVWKD 939
G+++R+W+D
Sbjct: 440 GKSVRIWRD 448
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 110 bits (275), Expect = 3e-22
Identities = 49/129 (37%), Positives = 76/129 (57%), Gaps = 1/129 (0%)
Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
+P + + + FWW S G+RK HW D + K K +GG+GFR + N A+L++Q
Sbjct: 220 LPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYWLFNQALLARQ 279
Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
WR++ + L + LK +YFP G + S G N S WRSI + +++ K +WRVG+
Sbjct: 280 AWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYG-LDLLKKGIIWRVGN 338
Query: 931 GRNIRVWKD 939
G +IR+W+D
Sbjct: 339 GNSIRIWRD 347
>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 816
Score = 110 bits (274), Expect = 4e-22
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
+P+G CE MI +FWWG ++ RK HW ++ K K GG+GF+ K N A+L++Q
Sbjct: 80 LPSGFCEDYMKMIRKFWWGEEKNRRKTHWTSWQQLIKPKSKGGIGFKDLKIFNQALLARQ 139
Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
WR++ + L + +K RYFP G + + S WR I H E++ K +WR+G
Sbjct: 140 AWRLIQFLDSLCAKLMKARYFPNGHLIDTVFPTDSSEVWRGICHG-LELLKKGIIWRIGK 198
Query: 931 GRNIRVWKDN 940
G + +W+DN
Sbjct: 199 GDQLHIWRDN 208
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 106 bits (265), Expect = 5e-21
Identities = 44/123 (35%), Positives = 73/123 (58%), Gaps = 1/123 (0%)
Query: 816 CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRIL 875
C+ M+ FWWG GERK+HWI +++ K GG+GFR K N A+L++Q WR+L
Sbjct: 727 CDDYTRMVRNFWWGHDNGERKVHWIAWEKILYPKSHGGLGFRDMKCFNQALLARQAWRLL 786
Query: 876 HNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIR 935
+ + L + K +Y+P G+ + + S W+ I H +++ + +WRVG+G NI+
Sbjct: 787 TSPDSLCARVFKAKYYPNGNLVDTAFPTVSSSVWKGIQHG-LDLLKQGTIWRVGNGHNIK 845
Query: 936 VWK 938
+W+
Sbjct: 846 IWR 848
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 105 bits (261), Expect = 1e-20
Identities = 48/124 (38%), Positives = 76/124 (60%), Gaps = 1/124 (0%)
Query: 816 CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRIL 875
C ++ S +S FWW + + +RK HW+ +++C +K+ GG+GFR + N A+L+KQ WR+L
Sbjct: 817 CVNMTSAMSDFWWNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLL 876
Query: 876 HNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIR 935
L + K RY+ DFL A + PSY WRSI+H + +++ K +VG+G +
Sbjct: 877 QFPNSLFARFFKSRYYDEEDFLDAELKATPSYAWRSILHGR-DLLIKGFRKKVGNGSSTS 935
Query: 936 VWKD 939
VW D
Sbjct: 936 VWMD 939
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411640|pir||H84529 hypothetical protein
At2g15510 [imported] - Arabidopsis thaliana
Length = 1138
Score = 104 bits (260), Expect = 2e-20
Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 14/179 (7%)
Query: 765 EDKTSSVQNIGFGRSLR-GGKEILC---LLQQEMY*LKLWSKKSLPM**VVPNG*CEHIE 820
+DK S + F R+L GGKEIL + ++Y + + C+++
Sbjct: 545 KDKLKSRLSGWFARTLSLGGKEILLKAVAMAMQVYAMSCFKLTKTT---------CKNLT 595
Query: 821 SMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEEL 880
S +S FWW + + +RK HW+ +++C K+ GG+GFR + N A+L+KQ WRIL
Sbjct: 596 SAMSDFWWNALEHKRKTHWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYPSF 655
Query: 881 LLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
L + K RYF +FL+A +G PSY SI+ + E++ K VG+G+++ VW D
Sbjct: 656 LFARFFKSRYFDDEEFLEADLGVRPSYACCSILFGR-ELLAKGLRKEVGNGKSLNVWMD 713
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 103 bits (258), Expect = 3e-20
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 812 PNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQG 871
P+ + + M FWWG+ G R+ HW D + K K GG+GFR +K N A+L++Q
Sbjct: 1451 PDSVYDELTKMTRNFWWGADNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQA 1510
Query: 872 WRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDG 931
WR++ L + LK +YFP G + N S TW I + +++ K +WR+G+G
Sbjct: 1511 WRLIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYG-LDLLKKGIIWRIGNG 1569
Query: 932 RNIRVWKD 939
++R+W+D
Sbjct: 1570 NSVRIWRD 1577
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 103 bits (257), Expect = 4e-20
Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
+P C+ IES+++ FWW +K+ R +HW + + K VGG+GF+ + N+A+L KQ
Sbjct: 810 IPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQ 869
Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRV-G 929
WR++ ++ L++ K RYF + D L A +G PS+ W+SI A +V+ K G+ V G
Sbjct: 870 LWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEA--QVLIKQGIRAVIG 927
Query: 930 DGRNIRVWKD 939
+G I VW D
Sbjct: 928 NGETINVWTD 937
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 102 bits (255), Expect = 7e-20
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 812 PNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQG 871
P C+ + M FWW + G R+ HW D + K K GG+GFR +K N A+L+ Q
Sbjct: 1295 PESVCDDLTKMTRNFWWVADNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLAPQA 1354
Query: 872 WRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDG 931
WR++ L + LK +YFP G + N S TW I + +++ K +WR+G+G
Sbjct: 1355 WRLIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYG-LDLLKKGIIWRIGNG 1413
Query: 932 RNIRVWKD 939
++R+W+D
Sbjct: 1414 NSVRIWRD 1421
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.358 0.160 0.572
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,769,598,415
Number of Sequences: 2540612
Number of extensions: 62634211
Number of successful extensions: 231970
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 231732
Number of HSP's gapped (non-prelim): 197
length of query: 1308
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1168
effective length of database: 507,674,714
effective search space: 592964065952
effective search space used: 592964065952
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 81 (35.8 bits)
Medicago: description of AC136840.1