BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136838.2 - phase: 2
(90 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_467300.1| hypothetical protein [Oryza sativa (japonica cu... 83 2e-15
ref|XP_578826.1| PREDICTED: similar to putative pheromone recept... 45 5e-04
emb|CAG05743.1| unnamed protein product [Tetraodon nigroviridis] 33 2.3
ref|ZP_00422011.1| Outer membrane autotransporter barrel [Burkho... 32 3.1
gb|AAX80470.1| hypothetical protein, conserved [Trypanosoma brucei] 32 3.1
emb|CAA80142.1| Hypothetical protein ZK1098.1 [Caenorhabditis el... 32 3.1
pir||S40923 hypothetical protein ZK1098.1 - Caenorhabditis elegans 32 3.1
dbj|BAA92080.1| unnamed protein product [Homo sapiens] gi|343955... 32 4.0
ref|ZP_00461512.1| hypothetical protein Bcen2424DRAFT_4667 [Burk... 32 4.0
gb|AAH67815.1| Cappuccino [Homo sapiens] 32 4.0
ref|XP_517096.1| PREDICTED: similar to Cappuccino protein homolo... 32 4.0
ref|XP_546740.1| PREDICTED: similar to P73 delta-N protein [Cani... 31 6.8
ref|NP_297607.1| NADH-ubiquinone oxidoreductase, NQO12 subunit [... 31 6.8
ref|NP_249384.1| transport protein ExbB2 [Pseudomonas aeruginosa... 31 6.8
ref|NP_778496.1| NADH-ubiquinone oxidoreductase NQO12 subunit [X... 31 6.8
ref|NP_754953.1| Hypothetical protein yphG [Escherichia coli CFT... 31 6.8
ref|ZP_00041897.2| COG1009: NADH:ubiquinone oxidoreductase subun... 31 6.8
gb|AAC75602.1| orf, hypothetical protein; putative transferase [... 31 6.8
gb|AAX84360.1| NuoL [Xylella fastidiosa] gi|62511541|gb|AAX84359... 31 6.8
gb|AAX84358.1| NuoL [Xylella fastidiosa] 31 6.8
>ref|XP_467300.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|41052959|dbj|BAD07869.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 109
Score = 82.8 bits (203), Expect = 2e-15
Identities = 40/52 (76%), Positives = 43/52 (81%)
Query: 31 NGALTLSGAPFQGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGIL 82
+GALTL GAPFQGTWARS AEDASP YNS+ RFS WA PGSLAVT+GIL
Sbjct: 3 DGALTLPGAPFQGTWARSVAEDASPDYNSDGAAARFSSWASPGSLAVTRGIL 54
>ref|XP_578826.1| PREDICTED: similar to putative pheromone receptor [Rattus
norvegicus]
Length = 374
Score = 45.1 bits (105), Expect = 5e-04
Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 4 NLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQ----GTWARSAAEDASPYYNS 59
+LPP GCIPKQPDS T R T+ G G +A +S + S
Sbjct: 292 SLPPALGCIPKQPDSGKT-RAWPACVRYRPHTIHGLGLDPKDLGPPRAAAGSGSSVRHIS 350
Query: 60 NAEGDRFSWWAYPGSLAVTKGILVSFFSSA 89
A A P S+A+T+GILVSFFSSA
Sbjct: 351 RA-------MALPCSVAITEGILVSFFSSA 373
>emb|CAG05743.1| unnamed protein product [Tetraodon nigroviridis]
Length = 880
Score = 32.7 bits (73), Expect = 2.3
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 6 PPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTW 45
PP+ G P PD+ T P+ A G H +T+ G W
Sbjct: 460 PPEGGAAP--PDTGTAPKAALGDHHTATVTIYDDDHAGAW 497
>ref|ZP_00422011.1| Outer membrane autotransporter barrel [Burkholderia vietnamiensis
G4] gi|67534777|gb|EAM31518.1| Outer membrane
autotransporter barrel [Burkholderia vietnamiensis G4]
Length = 996
Score = 32.3 bits (72), Expect = 3.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 17 DSPTTPRGAT-GSEHNGALTLSGAPFQGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSL 75
D+ TP G G LT G G A +A + P++ +N WW PGS
Sbjct: 884 DAHATPGGRIDGQRSTDLLTRVGVRVHGVTAIAAGRELRPFFEAN-------WWHGPGSR 936
Query: 76 AVT 78
A+T
Sbjct: 937 ALT 939
>gb|AAX80470.1| hypothetical protein, conserved [Trypanosoma brucei]
Length = 689
Score = 32.3 bits (72), Expect = 3.1
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSN 60
+GR LPP Q DSPT P G + L+G AR A +A P + N
Sbjct: 242 VGRTLPPVTAVPRNQSDSPT-PSCQGGRSSETSSKLAGPSHLQPSARGAVSEAPPSASGN 300
Query: 61 AEGDRFS 67
D FS
Sbjct: 301 GPMDSFS 307
>emb|CAA80142.1| Hypothetical protein ZK1098.1 [Caenorhabditis elegans]
gi|1353114|sp|P34600|YO61_CAEEL Hypothetical protein
ZK1098.1 in chromosome III gi|17557115|ref|NP_499098.1|
formin binding protein 3 like (84.7 kD) (3K613)
[Caenorhabditis elegans]
Length = 724
Score = 32.3 bits (72), Expect = 3.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 37 SGAPFQGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKG 80
SG P QG W ++D PYY + + + W P +TKG
Sbjct: 121 SGQPQQGQWKEFMSDDGKPYYYNTL--TKKTQWVKPDGEEITKG 162
>pir||S40923 hypothetical protein ZK1098.1 - Caenorhabditis elegans
Length = 695
Score = 32.3 bits (72), Expect = 3.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 37 SGAPFQGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKG 80
SG P QG W ++D PYY + + + W P +TKG
Sbjct: 92 SGQPQQGQWKEFMSDDGKPYYYNTL--TKKTQWVKPDGEEITKG 133
>dbj|BAA92080.1| unnamed protein product [Homo sapiens]
gi|34395560|sp|Q9NUP1|CNO_HUMAN Cappuccino protein
homolog gi|8922952|ref|NP_060836.1| cappuccino [Homo
sapiens]
Length = 217
Score = 32.0 bits (71), Expect = 4.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 8 DWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASP 55
D G +P+ P+GA S +G ++ S + G W AED +P
Sbjct: 7 DGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAP 54
>ref|ZP_00461512.1| hypothetical protein Bcen2424DRAFT_4667 [Burkholderia cenocepacia
HI2424] gi|67102253|gb|EAM19387.1| hypothetical protein
Bcen2424DRAFT_4667 [Burkholderia cenocepacia HI2424]
Length = 507
Score = 32.0 bits (71), Expect = 4.0
Identities = 21/67 (31%), Positives = 29/67 (42%), Gaps = 6/67 (8%)
Query: 13 PKQPDSPTTPRGATGSEHNGALTLSGAPF-QGTWARSAAED-----ASPYYNSNAEGDRF 66
P P T+P G T NG+ T GA Q W+ +AA D +P +A G+
Sbjct: 39 PGSPSGSTSPGGGTSGGSNGSPTGGGATQPQAGWSTAAAVDGKGPEGAPSVTIDASGNAL 98
Query: 67 SWWAYPG 73
+ W G
Sbjct: 99 ATWMTNG 105
>gb|AAH67815.1| Cappuccino [Homo sapiens]
Length = 217
Score = 32.0 bits (71), Expect = 4.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 8 DWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASP 55
D G +P+ P+GA S +G ++ S + G W AED +P
Sbjct: 7 DGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAP 54
>ref|XP_517096.1| PREDICTED: similar to Cappuccino protein homolog [Pan
troglodytes]
Length = 167
Score = 32.0 bits (71), Expect = 4.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 8 DWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASP 55
D G +P+ P+GA S +G ++ S + G W AED +P
Sbjct: 7 DGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAP 54
>ref|XP_546740.1| PREDICTED: similar to P73 delta-N protein [Canis familiaris]
Length = 977
Score = 31.2 bits (69), Expect = 6.8
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLS--GAPFQGTWARSAAEDASPYYN 58
L R LPP+WG P P + P G+ T + GA F+ W S+ E S Y++
Sbjct: 252 LPRALPPNWGLEPGPPLCKSKPPSGPGAGKMSQSTANDEGATFEHLW--SSLEPDSTYFD 309
>ref|NP_297607.1| NADH-ubiquinone oxidoreductase, NQO12 subunit [Xylella fastidiosa
9a5c] gi|9105139|gb|AAF83127.1| NADH-ubiquinone
oxidoreductase, NQO12 subunit [Xylella fastidiosa 9a5c]
gi|11254207|pir||F82822 NADH-ubiquinone oxidoreductase,
NQO12 subunit XF0316 [imported] - Xylella fastidiosa
(strain 9a5c)
Length = 713
Score = 31.2 bits (69), Expect = 6.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 32 GALTLSGAPF-QGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSS 88
G L L G PF G +++ +A+ Y+ +A SW A G AV G+LV+ F S
Sbjct: 410 GTLALVGTPFFSGFYSKDTIIEAAAYHAEHAH----SWVATYGYWAVLGGVLVTSFYS 463
>ref|NP_249384.1| transport protein ExbB2 [Pseudomonas aeruginosa PAO1]
gi|9946575|gb|AAG04082.1| transport protein ExbB2
[Pseudomonas aeruginosa PAO1] gi|11352713|pir||D83558
transport protein ExbB2 PA0693 [imported] - Pseudomonas
aeruginosa (strain PAO1)
Length = 615
Score = 31.2 bits (69), Expect = 6.8
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 7 PDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSA-------AEDASPYYNS 59
PD+ + +P TP + + N A T +G+P +G RSA ASP
Sbjct: 138 PDYTLVYHFDGAPGTPPRDSTAYANNAQTAAGSPVEGVIGRSAQLLGQPLLLPASPSLAV 197
Query: 60 NAEGD-RFSWWAYPGSLA 76
+A G FS W P LA
Sbjct: 198 SAGGTFSFSGWVRPDQLA 215
>ref|NP_778496.1| NADH-ubiquinone oxidoreductase NQO12 subunit [Xylella fastidiosa
Temecula1] gi|28056252|gb|AAO28145.1| NADH-ubiquinone
oxidoreductase NQO12 subunit [Xylella fastidiosa
Temecula1]
Length = 713
Score = 31.2 bits (69), Expect = 6.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 32 GALTLSGAPF-QGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSS 88
G L L G PF G +++ +A+ Y+ +A SW A G AV G+LV+ F S
Sbjct: 410 GTLALVGTPFFSGFYSKDTIIEAAAYHAEHAH----SWVATYGYWAVLGGVLVTSFYS 463
>ref|NP_754953.1| Hypothetical protein yphG [Escherichia coli CFT073]
gi|26109319|gb|AAN81521.1| Hypothetical protein yphG
[Escherichia coli CFT073]
Length = 1124
Score = 31.2 bits (69), Expect = 6.8
Identities = 14/26 (53%), Positives = 15/26 (56%)
Query: 47 RSAAEDASPYYNSNAEGDRFSWWAYP 72
R+A E AS YN NA F WWA P
Sbjct: 199 RAALEIASRVYNGNATPRHFLWWANP 224
>ref|ZP_00041897.2| COG1009: NADH:ubiquinone oxidoreductase subunit 5 (chain
L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Xylella
fastidiosa Ann-1]
Length = 705
Score = 31.2 bits (69), Expect = 6.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 32 GALTLSGAPF-QGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSS 88
G L L G PF G +++ +A+ Y+ +A SW A G AV G+LV+ F S
Sbjct: 402 GTLALVGTPFFSGFYSKDTIIEAAAYHAEHAH----SWVATYGYWAVLGGVLVTSFYS 455
>gb|AAC75602.1| orf, hypothetical protein; putative transferase [Escherichia coli
K12] gi|16130474|ref|NP_417044.1| putative transferase
[Escherichia coli K12] gi|7452141|pir||D65032
hypothetical protein b2549 - Escherichia coli (strain
K-12) gi|3025268|sp|P76585|YPHG_ECOLI Hypothetical
protein yphG
Length = 1124
Score = 31.2 bits (69), Expect = 6.8
Identities = 14/26 (53%), Positives = 15/26 (56%)
Query: 47 RSAAEDASPYYNSNAEGDRFSWWAYP 72
R+A E AS YN NA F WWA P
Sbjct: 199 RAALEIASRVYNGNATPRHFLWWANP 224
>gb|AAX84360.1| NuoL [Xylella fastidiosa] gi|62511541|gb|AAX84359.1| NuoL [Xylella
fastidiosa] gi|62511533|gb|AAX84355.1| NuoL [Xylella
fastidiosa]
Length = 607
Score = 31.2 bits (69), Expect = 6.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 32 GALTLSGAPF-QGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSS 88
G L L G PF G +++ +A+ Y+ +A SW A G AV G+LV+ F S
Sbjct: 375 GTLALVGTPFFSGFYSKDTIIEAAAYHAEHAH----SWVATYGYWAVLGGVLVTSFYS 428
>gb|AAX84358.1| NuoL [Xylella fastidiosa]
Length = 582
Score = 31.2 bits (69), Expect = 6.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 32 GALTLSGAPF-QGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSS 88
G L L G PF G +++ +A+ Y+ +A SW A G AV G+LV+ F S
Sbjct: 362 GTLALVGTPFFSGFYSKDTIIEAAAYHAEHAH----SWVATYGYWAVLGGVLVTSFYS 415
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.132 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,313,938
Number of Sequences: 2540612
Number of extensions: 7338945
Number of successful extensions: 16783
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 16771
Number of HSP's gapped (non-prelim): 39
length of query: 90
length of database: 863,360,394
effective HSP length: 66
effective length of query: 24
effective length of database: 695,680,002
effective search space: 16696320048
effective search space used: 16696320048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC136838.2