BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136507.9 + phase: 0 /pseudo
(261 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 81 3e-14
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 77 4e-13
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 74 5e-12
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 73 9e-12
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 72 2e-11
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ... 71 3e-11
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 69 1e-10
emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana] gi|3... 67 5e-10
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 65 2e-09
gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thali... 65 2e-09
gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D8... 65 2e-09
ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana] 63 7e-09
dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cul... 61 3e-08
ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cu... 60 8e-08
ref|NP_175165.1| expressed protein [Arabidopsis thaliana] 59 1e-07
gb|AAU89759.1| hypothetical protein [Solanum tuberosum] 59 2e-07
gb|AAT38702.1| putative RNase H domain containing protein [Solan... 59 2e-07
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 58 2e-07
ref|XP_470258.1| Unknown protein [Oryza sativa (japonica cultiva... 58 3e-07
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 57 5e-07
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 80.9 bits (198), Expect = 3e-14
Identities = 56/155 (36%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 96 VMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGV 155
V W+ P W+K+NTDGA NP A+ GGV RDHN +IG F N+ SA A+L GV
Sbjct: 151 VSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGV 210
Query: 156 ITAINIAGENNWRNIWLETDLQLAV----LAFKNLNMVPWSLRNKWLNYFEHVRSMNFLI 211
+ IA R + LE D ++ V + + + + LR L Y + I
Sbjct: 211 YYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLLR---LCYDFLSKGWIVRI 267
Query: 212 THIYIEGNSCADCMANVGLTLS-SFVWLPSLPDCI 245
+H+Y E N AD +AN +LS L S PD +
Sbjct: 268 SHVYREANRLADGLANYAFSLSLGLHLLESRPDVV 302
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 77.4 bits (189), Expect = 4e-13
Identities = 55/161 (34%), Positives = 76/161 (47%), Gaps = 24/161 (14%)
Query: 96 VMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGV 155
+ W P W+ +NTDGA NP +A+ GGV RD + ++ F N+ SA A+L GV
Sbjct: 506 IAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGV 565
Query: 156 ITAINIAGENNWRNIWLETDLQLAV------------LAFKNLNMVPWSLRNKWLNYFEH 203
+ +A E WR + LE D L V LAF + + + W+
Sbjct: 566 YYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFL-VRLCHGFISKDWI----- 619
Query: 204 VRSMNFLITHIYIEGNSCADCMANVGLTLS-SFVWLPSLPD 243
VR ITH+Y E N AD +AN TL F+ L S P+
Sbjct: 620 VR-----ITHVYREANRLADGLANYAFTLPFGFLLLDSCPE 655
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 73.6 bits (179), Expect = 5e-12
Identities = 59/185 (31%), Positives = 80/185 (42%), Gaps = 24/185 (12%)
Query: 83 INIHPPRAPLIKEVMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNL 142
+ I PR + + W+ P W+KVNTDGA NP AS GGV RD + G F N+
Sbjct: 548 VGITQPRVE--RMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNI 605
Query: 143 NTNSAFNAKLLGVITAINIAGENNWRNIWLETDLQLAVLAFKN-----------LNMVPW 191
SA A+L GV + A E + LE D ++ V K + +
Sbjct: 606 GRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHG 665
Query: 192 SLRNKWLNYFEHVRSMNFLITHIYIEGNSCADCMANVGLTLS-SFVWLPSLPDCIKHDYG 250
L+ WL VR I H+Y E N AD +AN +LS F +PD +
Sbjct: 666 FLQKDWL-----VR-----IVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLR 715
Query: 251 RNRLG 255
+ LG
Sbjct: 716 EDTLG 720
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 72.8 bits (177), Expect = 9e-12
Identities = 54/154 (35%), Positives = 74/154 (47%), Gaps = 4/154 (2%)
Query: 96 VMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGV 155
+ W P W K+NTDGA NP AS GGV RD + G F N+ SA A+L GV
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGV 203
Query: 156 ITAINIAGENNWRNIWLETDLQLAVLAFK-NLNMV-PWSLRNKWLNYFEHVRSMNFLITH 213
+ IA E + +E D ++ V K +N V P S + + F R I+H
Sbjct: 204 YYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFIS-RDWRVRISH 262
Query: 214 IYIEGNSCADCMANVGLTLS-SFVWLPSLPDCIK 246
+Y E N AD +AN +L F L +PD ++
Sbjct: 263 VYREANRLADGLANYAFSLPLGFHSLSLVPDSLR 296
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 72.0 bits (175), Expect = 2e-11
Identities = 50/141 (35%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 96 VMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGV 155
+ W PP W K+NTDGA NP A+ GGV RD + FV N+ SA A+L GV
Sbjct: 450 IKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGICSAPLAELWGV 509
Query: 156 ITAINIAGENNWRNIWLETDLQLAV----LAFKNLNMVPWSLRNKWLNYFEHVRSMNFLI 211
++IA E R + LE D L V ++ + + + +R L Y R I
Sbjct: 510 YYGLHIAWERGIRRLELEVDSTLVVGFLQAGIEDSHPLSFLVR---LCYGFISRDWIVRI 566
Query: 212 THIYIEGNSCADCMANVGLTL 232
+H+Y E N AD +AN +L
Sbjct: 567 SHVYREANRLADGLANYAFSL 587
>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 71.2 bits (173), Expect = 3e-11
Identities = 73/273 (26%), Positives = 112/273 (40%), Gaps = 44/273 (16%)
Query: 2 IYGKLCDKRWTPQCKVVVKAVIINILSAIWFIRNQARFKDKKNHWKSAIDNIIVAVSLTG 61
+Y LCD+ C+ + + I ++ IW+ WK NI G
Sbjct: 62 LYDNLCDRS---SCEDIPWSTIFAVI--IWW------------GWKWRCSNIF------G 98
Query: 62 NRTKLTSFVNMDEFVFLKAFKINIHPPRA---------PLIKEVM-WIPPIPPWIKVNTD 111
TK D F+K + + ++ P ++ ++ W+ P W+KVNTD
Sbjct: 99 ENTKCR-----DRVKFVKEWVVEVYRAHLGNALVGSTQPRVERLIGWVLPCVGWVKVNTD 153
Query: 112 GALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGVITAINIAGENNWRNIW 171
GA NP AS GGV RD + G F N+ SA +A+L GV + A E +
Sbjct: 154 GASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYYGLYFAWEKKVPRVE 213
Query: 172 LETDLQLAVLAFKNLNMV---PWSLRNKWLNYFEHVRSMNFLITHIYIEGNSCADCMANV 228
LE D + A++ F + P S + + F + I ++Y E N AD +AN
Sbjct: 214 LEVDSE-AIVGFLKTGISDSHPLSFLVRLCHNFLQ-KDWLVRIVYVYREANCLADGLANY 271
Query: 229 GLTLS-SFVWLPSLPDCIKHDYGRNRLGMHSFR 260
+ LS F +PD + + LG R
Sbjct: 272 TILLSLGFHSFDFVPDAMSSLLKEDTLGSTQLR 304
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 68.9 bits (167), Expect = 1e-10
Identities = 54/163 (33%), Positives = 74/163 (45%), Gaps = 25/163 (15%)
Query: 94 KEVMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLL 153
++++W P W VNTDGA NP A+ GV RD ++G F N+ SA A+L
Sbjct: 224 RQIVWKKPSERWATVNTDGASHGNPGFATARGVVRDGEGSWLGGFALNIGVCSAPLAELW 283
Query: 154 GVITAINIAGENNWRNIWLETDLQLAV------------LAFKNLNMVPWSLRNKWLNYF 201
GV + A E R + LE + +L V LAF + + + WL
Sbjct: 284 GVYYGLVTAWERGVRRVVLEVESKLVVGFLQSGIRDTHPLAFL-VRLCQGFIARDWL--- 339
Query: 202 EHVRSMNFLITHIYIEGNSCADCMANVGLTLSSFVWLPSLPDC 244
VR +TH+Y E N AD +AN TL + L L DC
Sbjct: 340 --VR-----VTHVYREANRLADGLANYAFTLP--IGLQLLDDC 373
>emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana]
gi|3402761|emb|CAA20207.1| hypothetical protein
[Arabidopsis thaliana] gi|3080386|emb|CAA18706.1|
hypothetical protein [Arabidopsis thaliana]
gi|7485719|pir||T05150 hypothetical protein F18E5.40 -
Arabidopsis thaliana
Length = 229
Score = 67.0 bits (162), Expect = 5e-10
Identities = 46/166 (27%), Positives = 82/166 (48%), Gaps = 7/166 (4%)
Query: 95 EVMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLG 154
+V+W P IK+N DG+ + +AS GGVFR+H F+ + +++ ++ A+
Sbjct: 60 KVVWKKPENGRIKLNFDGSRGREG-QASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAA 118
Query: 155 VITAINIAGENNWRNIWLETDLQLAVLAFKNLNMVPWSLRNKWLNYFEHV--RSMNFLIT 212
+ + +A EN ++WLE D ++ + + NK +NY + V N +++
Sbjct: 119 LKRGLELALENGLTDLWLEGDAKIIMDIISRRGRLRCEKTNKHVNYIKVVMPELNNCVLS 178
Query: 213 HIYIEGNSCADCMANVGLTLSS-FVWLPSLPDC---IKHDYGRNRL 254
H+Y EGN AD +A +G VW P+ I HD + ++
Sbjct: 179 HVYREGNRVADKLAKLGHQFQDPKVWRVQPPEIVLPIMHDDAKGKI 224
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 64.7 bits (156), Expect = 2e-09
Identities = 43/139 (30%), Positives = 66/139 (46%), Gaps = 3/139 (2%)
Query: 96 VMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGV 155
+ W P W+K+ TDGA N A+ GG R+ ++G F N+ + +A A+L G
Sbjct: 1061 IRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGA 1120
Query: 156 ITAINIAGENNWRNIWLETDLQLAV--LAFKNLNMVPWSLRNKWLNYFEHVRSMNFLITH 213
+ IA + +R + L+ D +L V L+ N P S + F R ++H
Sbjct: 1121 YYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGF-FTRDWLVRVSH 1179
Query: 214 IYIEGNSCADCMANVGLTL 232
+Y E N AD +AN TL
Sbjct: 1180 VYREANRLADGLANYAFTL 1198
>gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
gi|18394475|ref|NP_564020.1| hypothetical protein
[Arabidopsis thaliana] gi|9665118|gb|AAF97302.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 272
Score = 64.7 bits (156), Expect = 2e-09
Identities = 48/155 (30%), Positives = 72/155 (45%), Gaps = 8/155 (5%)
Query: 96 VMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGV 155
+ W PP W K+NTDGA NP A+ GGV RD + + F N+ SA A+L G
Sbjct: 102 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 161
Query: 156 ITAINIAGENNWRNIWLETDLQLAV----LAFKNLNMVPWSLRNKWLNYFEHVRSMNFLI 211
+NIA E + +E D ++ V + + + + +R L + + + I
Sbjct: 162 YYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVR---LCHGLLSKDWSVRI 218
Query: 212 THIYIEGNSCADCMANVGLTLS-SFVWLPSLPDCI 245
+H+Y E N AD +AN L F S PD +
Sbjct: 219 SHVYREANRLADGLANYAFFLPLGFHLFNSTPDIV 253
>gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D86310 protein
F1L3.4 [imported] - Arabidopsis thaliana
Length = 253
Score = 64.7 bits (156), Expect = 2e-09
Identities = 48/155 (30%), Positives = 72/155 (45%), Gaps = 8/155 (5%)
Query: 96 VMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGV 155
+ W PP W K+NTDGA NP A+ GGV RD + + F N+ SA A+L G
Sbjct: 83 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 142
Query: 156 ITAINIAGENNWRNIWLETDLQLAV----LAFKNLNMVPWSLRNKWLNYFEHVRSMNFLI 211
+NIA E + +E D ++ V + + + + +R L + + + I
Sbjct: 143 YYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVR---LCHGLLSKDWSVRI 199
Query: 212 THIYIEGNSCADCMANVGLTLS-SFVWLPSLPDCI 245
+H+Y E N AD +AN L F S PD +
Sbjct: 200 SHVYREANRLADGLANYAFFLPLGFHLFNSTPDIV 234
>ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana]
Length = 258
Score = 63.2 bits (152), Expect = 7e-09
Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 38/189 (20%)
Query: 2 IYGKLCDKRWTPQCKVVVKAVIINILSAIWFIRNQARFKDKKNHWKSAIDNIIVAVSLTG 61
+Y LCD+ C+ + + I ++ IW+ WK NI G
Sbjct: 62 LYDNLCDRS---SCEDIPWSTIFAVI--IWW------------GWKWRCSNIF------G 98
Query: 62 NRTKLTSFVNMDEFVFLKAFKINIHPPRA---------PLIKEVM-WIPPIPPWIKVNTD 111
TK D F+K + + ++ P ++ ++ W+ P W+KVNTD
Sbjct: 99 ENTKCR-----DRVKFVKEWVVEVYRAHLGNALVGSTQPRVERLIGWVLPCVGWVKVNTD 153
Query: 112 GALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGVITAINIAGENNWRNIW 171
GA NP AS GGV RD + G F N+ SA +A+L GV + A E +
Sbjct: 154 GASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYYGLYFAWEKKVPRVE 213
Query: 172 LETDLQLAV 180
LE D + V
Sbjct: 214 LEVDSEAIV 222
>dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 240
Score = 61.2 bits (147), Expect = 3e-08
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 97 MWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGVI 156
+W P W+K+N DG+ + AS GGV+RDH+ F+ + + + T ++ A+L +
Sbjct: 78 IWRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALR 137
Query: 157 TAINIAGENNWRNIWLETDLQLAV 180
+ +A N WR +W E D + V
Sbjct: 138 RGLELAVRNGWRRVWAEGDSKAVV 161
>ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|48717057|dbj|BAD23746.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 212
Score = 59.7 bits (143), Expect = 8e-08
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 98 WIPPIPPWIKVNTDGALTKNPTK-ASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGVI 156
W P WIK+N DG+ +K+ TK AS GGV+RDH F+ + + + ++ A+L +
Sbjct: 51 WRKPEAGWIKLNFDGS-SKHATKIASIGGVYRDHEGAFVLGYAERIGRATSSVAELAALR 109
Query: 157 TAINIAGENNWRNIWLETDLQLAV-LAFKNLNMVPWSLRNKWLNYFEHVRSM-----NFL 210
+ + N WR +W E D + V + N+ + L + ++ +
Sbjct: 110 RGLELVVRNGWRRVWAEGDSKTVVDVVCDRANV----RSEEDLRQCREIAALLPLIDDMA 165
Query: 211 ITHIYIEGNSCADCMANVG-LTLSSFVWLPSLPD 243
++H+Y GN A A +G + VW + P+
Sbjct: 166 VSHVYRSGNKVAHGFARLGHKAVRPRVWRAAPPE 199
>ref|NP_175165.1| expressed protein [Arabidopsis thaliana]
Length = 259
Score = 59.3 bits (142), Expect = 1e-07
Identities = 45/141 (31%), Positives = 70/141 (48%), Gaps = 4/141 (2%)
Query: 106 IKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGVITAINIAGEN 165
+K+NTDGA NP A+ GGV +D+ + G F N+ +SA A+L G + +A E
Sbjct: 101 LKINTDGASRGNPGLATAGGVLQDNEGRWCGGFSLNIGRSSAPMAELWGAYYGLYLAWER 160
Query: 166 NWRNIWLETDLQLAVLAFKN--LNMVPWSLRNKWLNYFEHVRSMNFLITHIYIEGNSCAD 223
+I LE D ++ V K + P S + + F + I H+Y E N AD
Sbjct: 161 KSSHIELEVDSEIVVGFLKTGISDHHPLSFLVRLCHGFIS-KDWRVRIFHVYREANRFAD 219
Query: 224 CMANVGLTLS-SFVWLPSLPD 243
+AN +L F ++P++ D
Sbjct: 220 GLANYVFSLPLGFHFVPNVVD 240
>gb|AAU89759.1| hypothetical protein [Solanum tuberosum]
Length = 1095
Score = 58.5 bits (140), Expect = 2e-07
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 4/210 (1%)
Query: 17 VVVKAVIINILSAIWFIRNQARFKDKKNHWKSAIDNIIVAVSLTGNRTKLTSFVNMDEFV 76
V++ + I I IW R ++ D+K W ++N + R SF + +
Sbjct: 465 VIIHTLPILIFWEIWKRRCACKYGDQKKMWYRTMENHVWWNLKMSLRMTFPSFEIGNSWR 524
Query: 77 FLKAFKINIHPPRAPLIKEVMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIG 136
L ++ P P K V W P +K+NTDG+ + A G + RDH I
Sbjct: 525 DLLNKVESLRP--YPKWKIVHWNTPNINCVKINTDGSFSSG--NAGLGWIVRDHTRRMIM 580
Query: 137 AFVQNLNTNSAFNAKLLGVITAINIAGENNWRNIWLETDLQLAVLAFKNLNMVPWSLRNK 196
AF + +S A+ L I + + N +LE D +L V +N ++
Sbjct: 581 AFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVVDMVRNGQATNLKIKGV 640
Query: 197 WLNYFEHVRSMNFLITHIYIEGNSCADCMA 226
+ + V MN + H Y E N AD +A
Sbjct: 641 VEDIIQVVAKMNCEVNHCYREANQVADALA 670
>gb|AAT38702.1| putative RNase H domain containing protein [Solanum demissum]
Length = 722
Score = 58.5 bits (140), Expect = 2e-07
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 4/210 (1%)
Query: 17 VVVKAVIINILSAIWFIRNQARFKDKKNHWKSAIDNIIVAVSLTGNRTKLTSFVNMDEFV 76
V++ + I I IW R ++ D+K W ++N + R SF + +
Sbjct: 287 VIIHTLPILIFWEIWKRRCACKYGDQKKMWYRTMENHVWWNLKMSLRMTFPSFEIGNSWR 346
Query: 77 FLKAFKINIHPPRAPLIKEVMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIG 136
L ++ P P K V W P +K+NTDG+ + A G + RDH I
Sbjct: 347 DLLNKVESLRP--YPKWKIVHWNTPNINCVKINTDGSFSSG--NAGLGWIVRDHTRRMIM 402
Query: 137 AFVQNLNTNSAFNAKLLGVITAINIAGENNWRNIWLETDLQLAVLAFKNLNMVPWSLRNK 196
AF + +S A+ L I + + N +LE D +L V +N ++
Sbjct: 403 AFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVVDMVRNGQATNLKIKGV 462
Query: 197 WLNYFEHVRSMNFLITHIYIEGNSCADCMA 226
+ + V MN + H Y E N AD +A
Sbjct: 463 VEDIIQVVAKMNCEVNHCYREANQVADALA 492
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 58.2 bits (139), Expect = 2e-07
Identities = 33/85 (38%), Positives = 45/85 (52%)
Query: 96 VMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGV 155
V W PP W+K+NTDGA N A+ GGV RD + G F ++ SA A+L GV
Sbjct: 839 VAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGV 898
Query: 156 ITAINIAGENNWRNIWLETDLQLAV 180
+ +A E + + LE D +L V
Sbjct: 899 YYGLYMAWERRFTRVELEVDSELVV 923
>ref|XP_470258.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
gi|22773232|gb|AAN06838.1| Unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 210
Score = 57.8 bits (138), Expect = 3e-07
Identities = 27/85 (31%), Positives = 41/85 (47%), Gaps = 2/85 (2%)
Query: 98 WIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTN--SAFNAKLLGV 155
W P W+K+N DG+ AS GG FRDH F+ + + + S+F A+L +
Sbjct: 47 WRKPEVGWMKLNFDGSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTAELAAL 106
Query: 156 ITAINIAGENNWRNIWLETDLQLAV 180
+ +A WR +W E D + V
Sbjct: 107 RRGLELAARYGWRRVWAEGDSRAVV 131
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 57.0 bits (136), Expect = 5e-07
Identities = 42/152 (27%), Positives = 67/152 (43%), Gaps = 3/152 (1%)
Query: 83 INIHPPRAPLIKEVMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNL 142
+N H RA + + + W P W+K+ TDGA + A+ G + ++G F N+
Sbjct: 787 LNNHVKRARVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFALNI 846
Query: 143 NTNSAFNAKLLGVITAINIAGENNWRNIWLETDLQLAV--LAFKNLNMVPWSLRNKWLNY 200
+ A A+L G + IA + +R + L D +L V L+ P S +
Sbjct: 847 GSCDAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKAHPLSFLVRLCQG 906
Query: 201 FEHVRSMNFLITHIYIEGNSCADCMANVGLTL 232
F R ++H+Y E N AD +AN L
Sbjct: 907 F-FTRDWLVRVSHVYREANRLADGLANYAFFL 937
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,378,057
Number of Sequences: 2540612
Number of extensions: 19067160
Number of successful extensions: 49915
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 49820
Number of HSP's gapped (non-prelim): 103
length of query: 261
length of database: 863,360,394
effective HSP length: 125
effective length of query: 136
effective length of database: 545,783,894
effective search space: 74226609584
effective search space used: 74226609584
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 74 (33.1 bits)
Medicago: description of AC136507.9