BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136506.7 - phase: 0 /pseudo
(1021 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana] 368 e-100
emb|CAB81200.1| putative retrotransposon polyprotein [Arabidopsi... 368 e-100
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 346 3e-93
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 345 4e-93
gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|A... 345 4e-93
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 344 8e-93
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 342 5e-92
pir||G86301 probable retroelement polyprotein [imported] - Arabi... 340 1e-91
emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|30212... 340 2e-91
ref|NP_194047.2| protein kinase family protein [Arabidopsis thal... 340 2e-91
gb|AAT40550.1| putative receptor kinase [Solanum demissum] 339 3e-91
gb|AAF79259.1| F12K21.14 [Arabidopsis thaliana] gi|25301710|pir|... 337 9e-91
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 337 2e-90
emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis th... 335 5e-90
emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar... 335 6e-90
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 335 6e-90
gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|2... 334 8e-90
ref|XP_470025.1| putative polyprotein [Oryza sativa (japonica cu... 333 2e-89
ref|NP_918613.1| polyprotein [Oryza sativa (japonica cultivar-gr... 332 3e-89
gb|AAL68641.1| polyprotein [Oryza sativa (japonica cultivar-group)] 332 4e-89
>dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana]
Length = 509
Score = 368 bits (945), Expect = e-100
Identities = 181/360 (50%), Positives = 245/360 (67%), Gaps = 4/360 (1%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK----PNQVCKLSKSLYGLK 649
+GL + W Q+DV NAFLH DL E++YM++ G T S PN VC+L KS+YGLK
Sbjct: 81 LGLVARKGWSTTQMDVTNAFLHSDLEEEIYMSLAQGYTPSSGSLPPNPVCRLHKSIYGLK 140
Query: 650 QASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFI 709
QASR+WY+ L+ L+ +G+QQ+ D +LF K S ++ +L+YVDDI++ ++ + +
Sbjct: 141 QASRQWYKCLSQTLLDDGFQQSYVDNTLFVKITSTAIVAMLIYVDDILIVSNNDEVVCAV 200
Query: 710 KNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDP 769
K+V+ +KIKDLG K+FLGLE+A + GIS+CQRKYCLDLL + GLLG KP + P DP
Sbjct: 201 KSVLAARYKIKDLGPAKFFLGLEIARNSDGISICQRKYCLDLLANSGLLGCKPKSVPMDP 260
Query: 770 SIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRV 829
+ L D L D YR L+GRL+YL TRPDITF LSQFLS PT+ H +AA +V
Sbjct: 261 KVVLTKDLGTLLEDGRPYRELIGRLLYLCVTRPDITFAVHNLSQFLSCPTNVHLHAAHQV 320
Query: 830 IKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*P 889
+KYLK +PG+G+F + L++ G+ +ADW C D+RRS+S C FLG SLI+W++KK
Sbjct: 321 LKYLKNNPGQGLFSSAGTELYLNGFADADWGTCLDSRRSVSGVCVFLGTSLITWKSKKQE 380
Query: 890 TISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S S+EAEYR+MA AT EL WL +L+DLH+ + L+CDN+S MHIA N FH R
Sbjct: 381 VASGSSTEAEYRSMAVATKELLWLAQMLKDLHVEMEFQVKLFCDNKSAMHIANNSVFHER 440
>emb|CAB81200.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
gi|4539373|emb|CAB40067.1| putative retrotransposon
polyprotein [Arabidopsis thaliana]
gi|7486142|pir||T04294 hypothetical protein F25I24.200 -
Arabidopsis thaliana
Length = 1203
Score = 368 bits (944), Expect = e-100
Identities = 176/363 (48%), Positives = 253/363 (69%), Gaps = 9/363 (2%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTT-------SKPNQVCKLSKSLY 646
+GLA+ W L Q+DV+NAFLHG+L E++YM++ G T SKP VC+L KSLY
Sbjct: 619 LGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKP--VCRLLKSLY 676
Query: 647 GLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEI 706
GLKQASR+WY++L+ + + + Q+ +D ++F K + S+ ++LVYVDD+++A + +
Sbjct: 677 GLKQASRQWYKRLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAV 736
Query: 707 AFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTP 766
+K ++ FKIKDLG ++FLGLE+A S GIS+CQRKY +LL D+GL G KP + P
Sbjct: 737 ENLKELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIP 796
Query: 767 SDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAA 826
DP++ L + L + ++YR LVGRL+YL TRPDITF LSQFLS PT H AA
Sbjct: 797 MDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAA 856
Query: 827 LRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTK 886
+V++YLKG+PG+G+ + SS L + G+++ADW CKD+RRS++ C +LG SLI+W++K
Sbjct: 857 HKVLRYLKGNPGQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSK 916
Query: 887 K*PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDF 946
K +SR S+E+EYR++A ATCE+ WL LL+DLH+ L+CDN+S +H+A NP F
Sbjct: 917 KQSVVSRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVF 976
Query: 947 HSR 949
H R
Sbjct: 977 HER 979
Score = 82.8 bits (203), Expect = 5e-14
Identities = 41/83 (49%), Positives = 56/83 (67%)
Query: 77 YFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPKFIRSDNGPEFLLLEFY 136
YFLT+VDD +R WV ++KNK+EVS +FV++I T ++ K IRSDN E +F
Sbjct: 252 YFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVKELAFTKFV 311
Query: 137 ASKGIIHQKSCVETPEQNARVER 159
+G+IHQ SC TP+QN+ VER
Sbjct: 312 KEQGMIHQFSCAYTPQQNSVVER 334
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm, score:
11.19) [Arabidopsis thaliana] gi|7486705|pir||T01879
hypothetical protein F8M12.17 - Arabidopsis thaliana
Length = 1633
Score = 346 bits (887), Expect = 3e-93
Identities = 171/363 (47%), Positives = 243/363 (66%), Gaps = 25/363 (6%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTT-------SKPNQVCKLSKSLY 646
+GLA+ W L Q+DV+NAFLHG+L E++YM++ G T SKP VC+L KSLY
Sbjct: 1033 LGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKP--VCRLLKSLY 1090
Query: 647 GLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEI 706
GLKQASR+WY++L+ + + + Q+ +D ++F K + S+ ++LVYVDD+++A + +
Sbjct: 1091 GLKQASRQWYKRLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAV 1150
Query: 707 AFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTP 766
+K ++ FKIKDLG ++FLGLE+A S GIS+CQRKY +LL D+GL G KP + P
Sbjct: 1151 ENLKELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIP 1210
Query: 767 SDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAA 826
DP++ L + L + ++YR LVGRL+YL TRPDITF LSQFLS PT H AA
Sbjct: 1211 MDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAA 1270
Query: 827 LRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTK 886
+V++YLKG+PG+ +ADW CKD+RRS++ C +LG SLI+W++K
Sbjct: 1271 HKVLRYLKGNPGQ----------------DADWGTCKDSRRSVTGFCIYLGTSLITWKSK 1314
Query: 887 K*PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDF 946
K +SR S+E+EYR++A ATCE+ WL LL+DLH+ L+CDN+S +H+A NP F
Sbjct: 1315 KQSVVSRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVF 1374
Query: 947 HSR 949
H R
Sbjct: 1375 HER 1377
Score = 191 bits (484), Expect = 1e-46
Identities = 98/216 (45%), Positives = 142/216 (65%), Gaps = 2/216 (0%)
Query: 8 HLSNQRLSKMHQLYPSI-SVDNKAT-CDICPFAKQRKLPYNFSHSIAKSKFELLYFDIWG 65
H S L K+ PS+ SV + A+ C I P AKQ++L Y +++A S F+L++ DIWG
Sbjct: 506 HPSLPALQKLVSSIPSLKSVSSTASHCRISPLAKQKRLAYVSHNNLASSPFDLIHLDIWG 565
Query: 66 PLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPKFIRSD 125
P + S+ G +YFLT+VDD +R WV ++KNK+EVS +FV++I T ++ K IRSD
Sbjct: 566 PFSIESVDGFRYFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSD 625
Query: 126 NGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLPNIFWSYA 185
N E +F +G+IHQ SC TP+QN+ VERKHQH+LN+AR+L FQ +P +WS
Sbjct: 626 NVKELAFTKFVKEQGMIHQFSCAYTPQQNSVVERKHQHLLNIARSLLFQSNVPLQYWSDC 685
Query: 186 VLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFK 221
VL + +LINR+P+P L +K+P+ +L +PD K
Sbjct: 686 VLTAAYLINRLPSPLLDNKTPFELLLKKIPDYTLLK 721
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|7444418|pir||T00499 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1496
Score = 345 bits (885), Expect = 4e-93
Identities = 176/356 (49%), Positives = 240/356 (66%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+ +A+ W +HQ+DV+NAFLHGDL E+VYM + PG S P++VC+L KSLYGLKQA R
Sbjct: 1081 LAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPR 1140
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVI 713
W+ KL+ L + G+ Q+ D SLF+ K ++ +LVYVDD+I+AG++L I K+ +
Sbjct: 1141 CWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQL 1200
Query: 714 NQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKL 773
++ F +KDLG LKYFLGLEV+ G L QRKY LD++ + GLLG KP P + KL
Sbjct: 1201 HKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKL 1260
Query: 774 HNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYL 833
+ + P+F + YRRLVGR IYL TRPD+++ LSQF+ P H+ AALR+++YL
Sbjct: 1261 ASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYL 1320
Query: 834 KGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISR 893
KGSP +GIF SSL I Y ++D+ C TRRS+S +LG S ISW+TKK T+S
Sbjct: 1321 KGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSY 1380
Query: 894 FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S+EAEYRAMA EL+WL LL+DL + + L+CD+++ +HIAANP FH R
Sbjct: 1381 SSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHER 1436
Score = 172 bits (435), Expect = 7e-41
Identities = 92/223 (41%), Positives = 129/223 (57%), Gaps = 2/223 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSIS-VDNKATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
+WH RLGH S L + + S D +CD C +KQ + + S++ F L+
Sbjct: 501 LWHRRLGHPSTSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTREVFPISNNKTMECFSLI 560
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITP 119
+ D+WGP S G YFLT+VDD+SR +W L+ +K EVS +K F + +
Sbjct: 561 HGDVWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQV 620
Query: 120 KFIRSDNGPEFLLLE-FYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K R+DNG EF+ L ++ + GI+HQ SCV+TP+QN RVERKH+HILNVARA FQ LP
Sbjct: 621 KAFRTDNGTEFMCLTPYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGNLP 680
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFK 221
FW ++L + LINR P+ L K+PY +L+ P +
Sbjct: 681 VKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYDMLR 723
>gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|AAM98191.1| unknown
protein [Arabidopsis thaliana]
Length = 776
Score = 345 bits (885), Expect = 4e-93
Identities = 176/356 (49%), Positives = 240/356 (66%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+ +A+ W +HQ+DV+NAFLHGDL E+VYM + PG S P++VC+L KSLYGLKQA R
Sbjct: 361 LAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPR 420
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVI 713
W+ KL+ L + G+ Q+ D SLF+ K ++ +LVYVDD+I+AG++L I K+ +
Sbjct: 421 CWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQL 480
Query: 714 NQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKL 773
++ F +KDLG LKYFLGLEV+ G L QRKY LD++ + GLLG KP P + KL
Sbjct: 481 HKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKL 540
Query: 774 HNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYL 833
+ + P+F + YRRLVGR IYL TRPD+++ LSQF+ P H+ AALR+++YL
Sbjct: 541 ASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYL 600
Query: 834 KGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISR 893
KGSP +GIF SSL I Y ++D+ C TRRS+S +LG S ISW+TKK T+S
Sbjct: 601 KGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSY 660
Query: 894 FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S+EAEYRAMA EL+WL LL+DL + + L+CD+++ +HIAANP FH R
Sbjct: 661 SSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHER 716
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 344 bits (883), Expect = 8e-93
Identities = 171/353 (48%), Positives = 239/353 (67%), Gaps = 6/353 (1%)
Query: 602 WFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVCKLSKSLYGLKQASRKWY 656
WFL QLDV+NAFL+G+L E+++M + G K N V +L +S+YGLKQASR+W+
Sbjct: 1042 WFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWF 1101
Query: 657 EKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQA 716
+K + L+S G+++ D +LF K I+LVYVDDI++A S A + ++Q
Sbjct: 1102 KKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQR 1161
Query: 717 FKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHND 776
FK++DLG LKYFLGLEVA + +GIS+CQRKY L+LL G+L KPV+ P P++K+ D
Sbjct: 1162 FKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKD 1221
Query: 777 SSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGS 836
L D+ YRR+VG+L+YL TRPDITF +L QF S P TH AA RV++Y+KG+
Sbjct: 1222 DGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGT 1281
Query: 837 PGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSS 896
G+G+F+ SS L ++G+ ++DWA C+D+RRS + F+G SLISWR+KK T+SR S+
Sbjct: 1282 VGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSA 1341
Query: 897 EAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
EAEYRA+A ATCE+ WL LL L + +LY D+ + ++IA NP FH R
Sbjct: 1342 EAEYRALALATCEMVWLFTLLVSLQ-ASPPVPILYSDSTAAIYIATNPVFHER 1393
Score = 209 bits (532), Expect = 4e-52
Identities = 105/217 (48%), Positives = 138/217 (63%), Gaps = 2/217 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNKAT--CDICPFAKQRKLPYNFSHSIAKSKFEL 58
+WH RLGH S QRL + + NK + C +C AKQRKL + S+ + K F+L
Sbjct: 557 MWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDL 616
Query: 59 LYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHIT 118
L+ D+WGP + ++ G+KYFLTIVDD SR W+ LLK K+EV F+Q ++ + +
Sbjct: 617 LHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVK 676
Query: 119 PKFIRSDNGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDN PE FYA KGI+ SC ETPEQN+ VERKHQHILNVARAL FQ ++P
Sbjct: 677 VKAVRSDNAPELKFTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVP 736
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLP 215
W VL +VFLINR P+ L +K+PY +L + P
Sbjct: 737 LSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAP 773
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301700|pir||G84542 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 342 bits (876), Expect = 5e-92
Identities = 177/357 (49%), Positives = 238/357 (66%), Gaps = 2/357 (0%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+ +A +W +HQ+DV+NAFLHGDL E+VYM + PG S PN+VC+L K+LYGLKQA R
Sbjct: 918 LDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVCRLRKALYGLKQAPR 977
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTK-KASVSLTILLVYVDDIILAGDSLIEIAFIKNV 712
W+EKLT L G+QQ+ +D SLFT K SV + IL +YVDD+I+ G+S K
Sbjct: 978 CWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKIL-IYVDDLIITGNSQRATQQFKEY 1036
Query: 713 INQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIK 772
+ F +KDLG LKYFLG+EVA S +GI +CQRKY LD++ + GLLG KP P + + K
Sbjct: 1037 LASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVKPANFPLEQNHK 1096
Query: 773 LHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKY 832
L +SPL D YRRLVGRLIYL TR D+ F L++F+ +P H+ AALRV++Y
Sbjct: 1097 LGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPREDHWAAALRVVRY 1156
Query: 833 LKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTIS 892
LK PG+G+F RS I G+ ++DWAG +RRS++ G S ISW+TKK T+S
Sbjct: 1157 LKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVS 1216
Query: 893 RFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
+ S+EAEYRAM+ EL WL LL L + V+ +++ CD++S ++IA NP FH R
Sbjct: 1217 KSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKSAIYIATNPVFHER 1273
Score = 186 bits (472), Expect = 3e-45
Identities = 98/225 (43%), Positives = 141/225 (62%), Gaps = 4/225 (1%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVD--NKATCDICPFAKQRKLPYNFSHSIAKSKFEL 58
+WH R+GH + + +S + + S+S NKA CD+C AKQ + + S + FEL
Sbjct: 391 LWHSRMGHPAARVVSLIPESSVSVSSTHLNKA-CDVCHRAKQTRNSFPLSINKTLRIFEL 449
Query: 59 LYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHIT 118
+Y D+WGP S G +YFLTI+DD+SR +W+ LL +K+E +K F + D ++
Sbjct: 450 IYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQFNVK 509
Query: 119 PKFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKL 177
K +RSDNG EFL L +F+ +G+IH++SCV TPE+N RVERKH+H+LNVARAL FQ L
Sbjct: 510 IKTVRSDNGTEFLCLTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRFQANL 569
Query: 178 PNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
P FW VL + +LINR P+ L+ +PY L+ P ++
Sbjct: 570 PIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFDHLRV 614
>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989054|gb|AAG10817.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 340 bits (873), Expect = 1e-91
Identities = 168/361 (46%), Positives = 241/361 (66%), Gaps = 5/361 (1%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVCKLSKSLYGL 648
I +A+ W L QLD++NAFL+G L E++YMT+ PG + + PN VC+L KSLYGL
Sbjct: 1009 IAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLPPGYSPRQGDSFPPNAVCRLKKSLYGL 1068
Query: 649 KQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAF 708
KQASR+WY K + L + G+ Q++ D +LFT+K+ S +LVYVDDII+A E
Sbjct: 1069 KQASRQWYLKFSESLKALGFTQSSGDHTLFTRKSKNSYMAVLVYVDDIIIASSCDRETEL 1128
Query: 709 IKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSD 768
+++ + ++ K++DLGTL+YFLGLE+A + GIS+CQRKY L+LL + GLLG K + P +
Sbjct: 1129 LRDALQRSSKLRDLGTLRYFLGLEIARNTDGISICQRKYTLELLAETGLLGCKSSSVPME 1188
Query: 769 PSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALR 828
P+ KL + L D YR+LVG+L+YL TRPDIT+ +L QF S P H A +
Sbjct: 1189 PNQKLSQEDGELIDDAEHYRKLVGKLMYLTFTRPDITYAVHRLCQFTSAPRVPHLKAVYK 1248
Query: 829 VIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK* 888
+I YLKG+ G+G+F+ + L + G+ ++D++ C D+R+ + C FLG SL++W++KK
Sbjct: 1249 IIYYLKGTVGQGLFYSANVDLKLSGFADSDFSSCSDSRKLTTGYCMFLGTSLVAWKSKKQ 1308
Query: 889 PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHS 948
IS S+EAEY+AM+ A E+ WL +LL DL I + VLYCDN + +HIA NP FH
Sbjct: 1309 EVISMSSAEAEYKAMSMAVREMMWLRFLLEDLWIDVSEASVLYCDNTAAIHIANNPVFHE 1368
Query: 949 R 949
R
Sbjct: 1369 R 1369
Score = 185 bits (470), Expect = 6e-45
Identities = 89/190 (46%), Positives = 124/190 (64%)
Query: 32 CDICPFAKQRKLPYNFSHSIAKSKFELLYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWV 91
CDIC AKQ+KL Y H+I + F+LL+ D+WGP ++ + G+ YFLTIVDD +R WV
Sbjct: 566 CDICQRAKQKKLTYPSRHNICLAPFDLLHIDVWGPFSEPTQEGYHYFLTIVDDHTRVTWV 625
Query: 92 ILLKNKAEVSLPVKIFVQIIDTHHHITPKFIRSDNGPEFLLLEFYASKGIIHQKSCVETP 151
L+K K++V F+ +++T + K +RSDN PE E Y KGI+ SC ETP
Sbjct: 626 YLMKYKSDVLTIFPDFITMVETQYDTKVKAVRSDNAPELKFEELYRRKGIVAYHSCPETP 685
Query: 152 EQNARVERKHQHILNVARALPFQFKLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLY 211
EQN+ VERKHQHILNVARAL FQ ++P +W +L +VF+INR P+P + +K+ + +L
Sbjct: 686 EQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPVISNKTLFEMLT 745
Query: 212 DSLPDIQFFK 221
+PD K
Sbjct: 746 KKVPDYTHLK 755
>emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|3021268|emb|CAA18463.1|
putative protein [Arabidopsis thaliana]
gi|7485945|pir||T04833 hypothetical protein F21P8.50 -
Arabidopsis thaliana
Length = 1240
Score = 340 bits (871), Expect = 2e-91
Identities = 170/370 (45%), Positives = 243/370 (64%), Gaps = 7/370 (1%)
Query: 587 CQSNNCKIGLA--SINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVC 639
C+ + K+ LA +I ++ LHQLD++NAFL+GDL E++YM + PG + PN VC
Sbjct: 171 CKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVC 230
Query: 640 KLSKSLYGLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILA 699
L KS+YGLKQASR+W+ K + LI G+ Q+ SD + F K + +LVYVDDII+
Sbjct: 231 YLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIIC 290
Query: 700 GDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLG 759
++ + +K+ + FK++DLG LKYFLGLE+A S +GI++CQRKY LDLL + GLLG
Sbjct: 291 SNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLG 350
Query: 760 SKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPT 819
KP + P DPS+ S F D AYRRL+GRL+YL TR DI+F +LSQF P
Sbjct: 351 CKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPR 410
Query: 820 HTHYNAALRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQS 879
H A ++++ Y+KG+ G+G+F+ + + +Q +++A + CKDTRRS + C FLG S
Sbjct: 411 LAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTS 470
Query: 880 LISWRTKK*PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMH 939
LISW++KK +S+ S+EAEYRA++ AT E+ WL R+L + K +L+CDN + +H
Sbjct: 471 LISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIH 530
Query: 940 IAANPDFHSR 949
IA N FH R
Sbjct: 531 IATNAVFHER 540
>ref|NP_194047.2| protein kinase family protein [Arabidopsis thaliana]
Length = 1262
Score = 340 bits (871), Expect = 2e-91
Identities = 170/370 (45%), Positives = 243/370 (64%), Gaps = 7/370 (1%)
Query: 587 CQSNNCKIGLA--SINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVC 639
C+ + K+ LA +I ++ LHQLD++NAFL+GDL E++YM + PG + PN VC
Sbjct: 171 CKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVC 230
Query: 640 KLSKSLYGLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILA 699
L KS+YGLKQASR+W+ K + LI G+ Q+ SD + F K + +LVYVDDII+
Sbjct: 231 YLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIIC 290
Query: 700 GDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLG 759
++ + +K+ + FK++DLG LKYFLGLE+A S +GI++CQRKY LDLL + GLLG
Sbjct: 291 SNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLG 350
Query: 760 SKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPT 819
KP + P DPS+ S F D AYRRL+GRL+YL TR DI+F +LSQF P
Sbjct: 351 CKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPR 410
Query: 820 HTHYNAALRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQS 879
H A ++++ Y+KG+ G+G+F+ + + +Q +++A + CKDTRRS + C FLG S
Sbjct: 411 LAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTS 470
Query: 880 LISWRTKK*PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMH 939
LISW++KK +S+ S+EAEYRA++ AT E+ WL R+L + K +L+CDN + +H
Sbjct: 471 LISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIH 530
Query: 940 IAANPDFHSR 949
IA N FH R
Sbjct: 531 IATNAVFHER 540
>gb|AAT40550.1| putative receptor kinase [Solanum demissum]
Length = 1358
Score = 339 bits (869), Expect = 3e-91
Identities = 167/359 (46%), Positives = 240/359 (66%), Gaps = 3/359 (0%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQ--VCKLSKSLYGLKQA 651
+ +A++ HW LHQLD+ NAFLHGDL E+VYM PG + VC+L +SLYGLKQ+
Sbjct: 940 LSMAAVRHWPLHQLDIKNAFLHGDLEEEVYMEQPPGFVAQGESSSLVCRLRRSLYGLKQS 999
Query: 652 SRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTI-LLVYVDDIILAGDSLIEIAFIK 710
R W+ K + ++ G ++ +D S+F + ++ S I L+VYVDDI++ G+ I +K
Sbjct: 1000 PRAWFGKFSTVIQEFGMTRSGADHSVFYRHSAPSRCIYLVVYVDDIVITGNDQDGITDLK 1059
Query: 711 NVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPS 770
+ + F+ KDLG LKYFLG+EVA S+SGI + QRKY LD+L + G++G +PV TP DP+
Sbjct: 1060 QHLFKHFQTKDLGRLKYFLGIEVAQSRSGIVISQRKYALDILEETGMMGCRPVDTPMDPN 1119
Query: 771 IKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVI 830
+KL ++ YRRLVG+L YL TRPDI+F +SQF++ P +H+ A +R++
Sbjct: 1120 VKLLPGQGEPLSNPERYRRLVGKLNYLTVTRPDISFPVSVVSQFMTSPCDSHWEAVVRIL 1179
Query: 831 KYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PT 890
+Y+K +PG+G+ F HI GYT+ADWAG RRS S C +G +L+SW++KK
Sbjct: 1180 RYIKSAPGKGLLFEDQGHEHIIGYTDADWAGSPSDRRSTSGYCVLVGGNLVSWKSKKQNV 1239
Query: 891 ISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
++R S+E+EYRAMA+ATCEL W+ LL +L V + L CDNQ+ +HIA+NP FH R
Sbjct: 1240 VARSSAESEYRAMATATCELVWIKQLLGELKFGKVDKMELVCDNQAALHIASNPVFHER 1298
Score = 145 bits (365), Expect = 9e-33
Identities = 78/213 (36%), Positives = 125/213 (58%), Gaps = 7/213 (3%)
Query: 3 HFRLGHLSNQRLSKMHQLYPSISVDNKATCDICPFAKQRKLPYNFS-HSIAKSKFELLYF 61
H RLGH S LSK+ ++ PS+S + C+ C K + ++ S ++S F L++
Sbjct: 489 HKRLGHSS---LSKLQKMVPSLSSLSTLDCESCQLGKHTRATFSRSTEGRSESIFSLVHS 545
Query: 62 DIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPKF 121
DIWGP +S G +YF++ +DD+S+ WV L+K+++E+ K F I ++ +
Sbjct: 546 DIWGPSRVSSTLGFRYFVSFIDDYSKCTWVFLMKDRSELFSIFKSFFAEIQNQFGVSIRT 605
Query: 122 IRSDNGPEFL---LLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
RSDN E+L EF +GIIHQ +C TP+QN ERK++H++ AR L + +P
Sbjct: 606 FRSDNALEYLSSQFREFMTHQGIIHQTTCPYTPQQNGVAERKNRHLIETARTLLLESNVP 665
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLY 211
FW AVL S +LINR+P+ + ++ P+ +L+
Sbjct: 666 LRFWGDAVLTSCYLINRMPSSSIQNQVPHSILF 698
>gb|AAF79259.1| F12K21.14 [Arabidopsis thaliana] gi|25301710|pir||C86469 protein
F12K21.14 [imported] - Arabidopsis thaliana
Length = 427
Score = 337 bits (865), Expect = 9e-91
Identities = 168/359 (46%), Positives = 235/359 (64%), Gaps = 6/359 (1%)
Query: 596 LASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVCKLSKSLYGLKQ 650
+++ WFL+QLD++NAFL+GDL E++YM + G K PN VC+L KS+YGLKQ
Sbjct: 10 VSASKQWFLNQLDISNAFLNGDLDEEIYMKLPDGYADIKGDSLPPNAVCRLKKSIYGLKQ 69
Query: 651 ASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIK 710
ASR+W++K + L+ G+ + D +LF + LLVYVDDI++A + +
Sbjct: 70 ASRQWFKKFSESLLKLGFMKQQGDHTLFVRCQGSDFIALLVYVDDIVIASTTESLAISLT 129
Query: 711 NVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPS 770
+ ++FK+++LG LKYFLGLEVA + GISLCQRKY L+LL G+L KP T P P+
Sbjct: 130 EALKESFKLRELGPLKYFLGLEVARTTEGISLCQRKYALELLTSAGMLDCKPSTIPMTPN 189
Query: 771 IKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVI 830
++L L D YR LVGRL+YL TRPDITF +L QF S P +H A +V+
Sbjct: 190 LRLSKADGVLLEDAEMYRSLVGRLMYLTITRPDITFAVNKLCQFSSAPRTSHLTAVYKVL 249
Query: 831 KYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PT 890
+Y+KG+ G+G+F+ S L ++GYT+ADW C D+RRS + F+G SLISWR+KK PT
Sbjct: 250 QYIKGTVGQGLFYSADSDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPT 309
Query: 891 ISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
+SR S+EAEYRA+A A+CE+ WL LL L + + +LY D+ + ++IA NP FH R
Sbjct: 310 VSRSSAEAEYRALALASCEMAWLFTLLIALRV-ATSVPILYSDSTAAVYIAINPVFHER 367
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301698|pir||C84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1501
Score = 337 bits (863), Expect = 2e-90
Identities = 169/350 (48%), Positives = 235/350 (66%)
Query: 600 NHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASRKWYEKL 659
N W ++Q+DV+NAFLHGDL E+VYM + PG S P++VC+L KSLYGLKQA R W++KL
Sbjct: 1092 NQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKL 1151
Query: 660 TGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAFKI 719
+ L+ G+ Q+ D SLF+ + +L+YVDD+++ G+ + K+ +++ F +
Sbjct: 1152 SDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSM 1211
Query: 720 KDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSP 779
KDLG LKYFLG+EV+ GI L QRKY LD++ D G LGS+P TP + + L +D P
Sbjct: 1212 KDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGP 1271
Query: 780 LFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGR 839
L +D YRRLVGRL+YL TRP++++ L+QF+ P H++AALRV++YLKGSPG+
Sbjct: 1272 LLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQ 1331
Query: 840 GIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSSEAE 899
GI L ++ Y ++DW C TRRSIS LG S ISW+TKK T+S S+EAE
Sbjct: 1332 GILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAE 1391
Query: 900 YRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
YRAM+ A E++WL LL++L I LYCD+++ +HIAANP FH R
Sbjct: 1392 YRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHER 1441
Score = 181 bits (460), Expect = 8e-44
Identities = 97/216 (44%), Positives = 131/216 (59%), Gaps = 1/216 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELLY 60
+WH RLGH S LS + + S +CD+C AKQ + + S + + F L++
Sbjct: 529 LWHQRLGHPSFSVLSSLPLFSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLIH 588
Query: 61 FDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPK 120
D+WGP + G YFLTIVDD+SR +W LL K+EV + F++ + T K
Sbjct: 589 CDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVK 648
Query: 121 FIRSDNGPEFLLLE-FYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLPN 179
+RSDNG EF+ L ++ GIIHQ SCV TP+QN RVERKH+HILNVARAL FQ LP
Sbjct: 649 MVRSDNGTEFMCLSSYFRENGIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASLPI 708
Query: 180 IFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLP 215
FW ++L + +LINR P+ L ++PY VL+ S P
Sbjct: 709 KFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKP 744
>emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|2961349|emb|CAA18107.1| LTR retrotransposon like
protein [Arabidopsis thaliana] gi|11358464|pir||T49111
hypothetical retrovirus-related pol polyprotein AT4g22040
- Arabidopsis thaliana
Length = 1109
Score = 335 bits (859), Expect = 5e-90
Identities = 168/356 (47%), Positives = 239/356 (66%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+G+A+ W +HQ+DV+NAFLHGDL E+VYM + G P++VC+L KSLYGLKQA R
Sbjct: 694 LGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPR 753
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVI 713
W+ KL+ L G+ Q+ SD SLF+ +LVYVDD+I++G +A K+ +
Sbjct: 754 CWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYL 813
Query: 714 NQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKL 773
F +KDLG LKYFLG+EV+ + G L QRKY LD++ ++GLLG++P P + + KL
Sbjct: 814 ESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKL 873
Query: 774 HNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYL 833
+SPL +D S YRRLVGRLIYL TRP++++ L+QF+ P H+NAA+RV++YL
Sbjct: 874 SLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYL 933
Query: 834 KGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISR 893
K +PG+GI +S+L I G+ ++D+A C TRRS++ LG + ISW+TKK PTISR
Sbjct: 934 KSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTISR 993
Query: 894 FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S+EAEYRAMA T EL WL +L DL + V+ + ++ D++S + ++ NP H R
Sbjct: 994 SSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHER 1049
Score = 186 bits (472), Expect = 3e-45
Identities = 95/224 (42%), Positives = 137/224 (60%), Gaps = 2/224 (0%)
Query: 1 IWHFRLGHLSNQRLSKM-HQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
+WH RLGH S++ ++ + +L S + CD C AKQ + + + + F+L+
Sbjct: 291 LWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLRDNRSMDSFQLI 350
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITP 119
+ D+WGP S G +YFLTIVDD+SR +WV L+ +K+E +K F+ +++
Sbjct: 351 HCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVERQFDTEI 410
Query: 120 KFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDNG EFL + E++ KGI H+ SCV TP QN RVERKH+HILN+ARAL FQ LP
Sbjct: 411 KTVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLP 470
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
FW +L + +LINR P+ L KSPY +LY + P ++
Sbjct: 471 IQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRV 514
>emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar-group)]
gi|50925209|ref|XP_472906.1| OSJNBb0011N17.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1262
Score = 335 bits (858), Expect = 6e-90
Identities = 169/350 (48%), Positives = 237/350 (67%), Gaps = 4/350 (1%)
Query: 602 WFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPN-QVCKLSKSLYGLKQASRKWYEKLT 660
W LHQLDV NAFLHGDL E+VYM + PG T + +V +L KSLYGLKQ+ R W+++
Sbjct: 855 WPLHQLDVKNAFLHGDLQEEVYMEIPPGFATLQTKGKVLRLKKSLYGLKQSPRAWFDRFR 914
Query: 661 GLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAFKIK 720
+ + GY+Q D ++F + +TIL VYVDD+I+ G+ EI +K +++ F++K
Sbjct: 915 RAMCAMGYKQCNGDHTVFYHHSGDHITILAVYVDDMIITGNDCSEITRLKQNLSKEFEVK 974
Query: 721 DLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDS-SP 779
DLG LKYFLG+E+A S GI L QRKY LDLL D G+LG +P +TP D + KL +S +P
Sbjct: 975 DLGQLKYFLGIEIARSPRGIVLSQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNP 1034
Query: 780 LFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGR 839
+ + Y+RLVGRLIYL TRPDIT+ +S+++ P H +A R+++YLKGSPG+
Sbjct: 1035 V--NKERYQRLVGRLIYLCHTRPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGK 1092
Query: 840 GIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSSEAE 899
G++F ++ L ++GY +ADWA C D RRS S C F+G +L+SWR+KK P +SR ++EAE
Sbjct: 1093 GLWFKKNGHLEVEGYCDADWASCPDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAE 1152
Query: 900 YRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
YRAM+ + EL WL LL +L + + L+CDN+S + IA NP H R
Sbjct: 1153 YRAMSVSLSELLWLRNLLSELMLPVDTPMKLWCDNKSAISIANNPVQHDR 1202
Score = 55.8 bits (133), Expect = 7e-06
Identities = 23/59 (38%), Positives = 39/59 (65%)
Query: 153 QNARVERKHQHILNVARALPFQFKLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLY 211
+N ERK++H+L +AR+L + +P WS AV+ + +LINR P+ L K+PY +++
Sbjct: 447 ENGVAERKNRHLLEIARSLMYTMNVPKFLWSEAVMTAAYLINRTPSRILGMKTPYEMIF 505
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 335 bits (858), Expect = 6e-90
Identities = 167/356 (46%), Positives = 239/356 (66%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+G+A+ W +HQ+DV+NAFLHGDL E+VYM + G P++VC+L KSLYGLKQA R
Sbjct: 694 LGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPR 753
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVI 713
W+ KL+ L G+ Q+ SD SLF+ +LVYVDD+I++G +A K+ +
Sbjct: 754 CWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYL 813
Query: 714 NQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKL 773
F +KDLG LKYFLG+EV+ + G L QRKY LD++ ++GLLG++P P + + KL
Sbjct: 814 ESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKL 873
Query: 774 HNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYL 833
+SPL +D S YRRLVGRLIYL TRP++++ L+QF+ P H+NAA+RV++YL
Sbjct: 874 SLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYL 933
Query: 834 KGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISR 893
K +PG+GI +S+L I G+ ++D+A C TRRS++ LG + ISW+TKK PT+SR
Sbjct: 934 KSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTVSR 993
Query: 894 FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S+EAEYRAMA T EL WL +L DL + V+ + ++ D++S + ++ NP H R
Sbjct: 994 SSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHER 1049
Score = 189 bits (481), Expect = 3e-46
Identities = 96/224 (42%), Positives = 139/224 (61%), Gaps = 2/224 (0%)
Query: 1 IWHFRLGHLSNQRLSKM-HQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
+WH RLGH S++ ++ + +L S + CD C AKQ + + S + + F+L+
Sbjct: 291 LWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQLI 350
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITP 119
+ D+WGP S G +YFLTIVDD+SR +WV L+ +K+E +K F+ +++
Sbjct: 351 HCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEI 410
Query: 120 KFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDNG EFL + E++ KGI H+ SCV TP QN RVERKH+HILN+ARAL FQ LP
Sbjct: 411 KTVRSDNGTEFLCMREYFLHKGITHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLP 470
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
FW +L + +LINR P+ L KSPY +LY + P+ ++
Sbjct: 471 IQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPNYSHLRV 514
>gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|25301686|pir||F96610
probable polyprotein T8L23.26 [imported] - Arabidopsis
thaliana
Length = 1468
Score = 334 bits (857), Expect = 8e-90
Identities = 167/356 (46%), Positives = 239/356 (66%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+G+A+ W +HQ+DV+NAFLHGDL E+VYM + G P++VC+L KSLYGLKQA R
Sbjct: 1053 LGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPR 1112
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVI 713
W+ KL+ L G+ Q+ SD SLF+ +LVYVDD+I++G +A K+ +
Sbjct: 1113 CWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLIISGSCPDAVAQFKSYL 1172
Query: 714 NQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKL 773
F +KDLG LKYFLG+EV+ + G L QRKY LD++ ++GLLG++P P + + KL
Sbjct: 1173 ESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKL 1232
Query: 774 HNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYL 833
+SPL +D S YRRLVGRLIYL TRP++++ L+QF+ P H+NAA+RV++YL
Sbjct: 1233 SLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYL 1292
Query: 834 KGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISR 893
K +PG+GI +S+L I G+ ++D+A C TRRS++ LG + ISW+TKK PT+SR
Sbjct: 1293 KSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTVSR 1352
Query: 894 FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S+EAEYRAMA T EL WL +L DL + V+ + ++ D++S + ++ NP H R
Sbjct: 1353 SSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHER 1408
Score = 189 bits (481), Expect = 3e-46
Identities = 96/224 (42%), Positives = 138/224 (60%), Gaps = 2/224 (0%)
Query: 1 IWHFRLGHLSNQRLSKM-HQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
+WH RLGH S++ ++ + +L S + CD C AKQ + + S + + F+L+
Sbjct: 515 LWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQLI 574
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITP 119
+ D+WGP S G +YFLTIVDD+SR +WV L+ +K+E +K F+ +++
Sbjct: 575 HCDVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEI 634
Query: 120 KFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDNG EFL + E++ KGI H+ SCV TP QN RVERKH+HILN+ARAL FQ LP
Sbjct: 635 KIVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLP 694
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
FW +L + +LINR P+ L KSPY +LY + P ++
Sbjct: 695 IQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRV 738
>ref|XP_470025.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30103001|gb|AAP21414.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1393
Score = 333 bits (853), Expect = 2e-89
Identities = 166/349 (47%), Positives = 233/349 (66%), Gaps = 2/349 (0%)
Query: 602 WFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKP-NQVCKLSKSLYGLKQASRKWYEKLT 660
W LHQLDV NAFLHGDLHE+VYM + PG S+ +VCKL KSLYGLKQ+ R W+++
Sbjct: 986 WPLHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQTVGKVCKLKKSLYGLKQSPRAWFDRFR 1045
Query: 661 GLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAFKIK 720
+ GY Q D ++F K +TIL VYVDDI++ GD + EI +K + +AF++K
Sbjct: 1046 HAVCDMGYSQCNGDHTVFYKHRGTHITILAVYVDDIVITGDDVEEIRCLKERLGKAFEVK 1105
Query: 721 DLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSPL 780
DLG L+YFLG+E+A S GI L QRKY LDLL D G+LG + TTP D + +L S
Sbjct: 1106 DLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLGCRASTTPIDRNHQLCAQSGDP 1165
Query: 781 FADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGRG 840
D AY+RLVGRLIYL TRPDI++ +S+++ P H + ++++YLKG+PG+G
Sbjct: 1166 -VDKEAYQRLVGRLIYLCHTRPDISYAVSVVSRYMHDPRTGHLDVVHKILRYLKGTPGKG 1224
Query: 841 IFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSSEAEY 900
++F ++ L+++GY +ADWA D RRS S C F+G +L+SWR+KK ++R ++EAEY
Sbjct: 1225 LWFRKNGHLNVEGYCDADWASSMDDRRSTSGYCVFVGGNLVSWRSKKQAVVARSTAEAEY 1284
Query: 901 RAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
RAMA + E+ W+ LL +L + ++L+CDN+S + IA NP H R
Sbjct: 1285 RAMALSLSEMLWMRSLLTELRVLRSDTVMLHCDNKSAISIANNPVQHDR 1333
Score = 76.3 bits (186), Expect = 5e-12
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 114 HHHITPKFIRSDNGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPF 173
H + + D E LL + +GIIHQ +C TP QN ERK++H+L VAR+L F
Sbjct: 493 HEELGLAAVVGDVEKEISLLHY---EGIIHQTTCPGTPPQNGVAERKNRHLLEVARSLMF 549
Query: 174 QFKLPNIFWSYAVLYSVFLINRVPTPFLHHKSP 206
Q +P WS AV+ + +LINR+P+ L KSP
Sbjct: 550 QMNVPKYLWSEAVMTAAYLINRMPSRILGMKSP 582
>ref|NP_918613.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1554
Score = 332 bits (852), Expect = 3e-89
Identities = 166/349 (47%), Positives = 233/349 (66%), Gaps = 2/349 (0%)
Query: 602 WFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKP-NQVCKLSKSLYGLKQASRKWYEKLT 660
W LHQLDV NAFLHGDLHE+VYM + PG S+ +VCKL KSLYGLKQ+ R W+++
Sbjct: 1147 WPLHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQTVGKVCKLKKSLYGLKQSPRAWFDRFR 1206
Query: 661 GLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAFKIK 720
+ GY Q D ++F K +TIL VYVDDI++ GD + EI +K + +AF++K
Sbjct: 1207 HAVCDMGYSQCNGDHTVFYKHRGTHITILAVYVDDIVITGDDVEEIRCLKERLGKAFEVK 1266
Query: 721 DLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSPL 780
DLG L+YFLG+E+A S GI L QRKY LDLL D G+LG + TTP D + +L S
Sbjct: 1267 DLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLGCRASTTPIDRNHQLCAQSGDP 1326
Query: 781 FADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGRG 840
D AY+RLVGRLIYL TRPDI++ +S+++ P H + ++++YLKG+PG+G
Sbjct: 1327 -VDKEAYQRLVGRLIYLCHTRPDISYAVSVVSRYMHDPRTGHLDVVHKILRYLKGTPGKG 1385
Query: 841 IFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSSEAEY 900
++F ++ L+++GY +ADWA D RRS S C F+G +L+SWR+KK ++R ++EAEY
Sbjct: 1386 LWFRKNGHLNVEGYCDADWASSMDDRRSTSGYCVFVGGNLVSWRSKKQAVVARSTAEAEY 1445
Query: 901 RAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
RAMA + E+ W+ LL +L + ++L+CDN+S + IA NP H R
Sbjct: 1446 RAMALSFSEMLWMRSLLTELRVLRSDTVMLHCDNKSAISIANNPVQHDR 1494
Score = 148 bits (374), Expect = 8e-34
Identities = 84/210 (40%), Positives = 122/210 (58%), Gaps = 9/210 (4%)
Query: 3 HFRLGHLSNQRLSKMHQLYPSI--SVD-NKATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
H +LGH S + LSK LYP + VD ++ CD C K + Y F L+
Sbjct: 536 HCQLGHPSFEILSK---LYPDLFSRVDKHRLVCDACELGKHTRSTYVGIGLRNCELFILI 592
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITP 119
+ D+WGP TS+ G K+F+T +D +R W+ +LK+K+EV + F +++ T
Sbjct: 593 HSDVWGPCPVTSVSGFKWFVTFIDCHTRMTWIYMLKHKSEVLRCFQDFHKLVTTQFDAKV 652
Query: 120 KFIRSDNGPEFLLLEFYA---SKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFK 176
K IR+DNG E++ EF + +GIIHQ +C TP QN ERK++H+L VAR+L FQ
Sbjct: 653 KIIRTDNGTEYINNEFVSYVSDEGIIHQTTCPGTPPQNGVAERKNRHLLEVARSLMFQMN 712
Query: 177 LPNIFWSYAVLYSVFLINRVPTPFLHHKSP 206
+P WS AV+ + +LINR+P+ L KSP
Sbjct: 713 VPKYLWSEAVMTAAYLINRMPSRILGMKSP 742
>gb|AAL68641.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1472
Score = 332 bits (851), Expect = 4e-89
Identities = 168/350 (48%), Positives = 236/350 (67%), Gaps = 4/350 (1%)
Query: 602 WFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPN-QVCKLSKSLYGLKQASRKWYEKLT 660
W LHQLDV NAFLHGDL E+VYM + PG T + +V +L KSLYGLKQ+ R W+++
Sbjct: 1065 WPLHQLDVKNAFLHGDLQEEVYMEIPPGFATLQTKGKVLRLKKSLYGLKQSPRAWFDRFR 1124
Query: 661 GLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAFKIK 720
+ + GY+Q D ++F + +TIL VYVDD+I+ G+ EI +K +++ F++K
Sbjct: 1125 RAMCAMGYKQCNGDHTVFYHHSGDHITILAVYVDDMIITGNDCSEITRLKQNLSKEFEVK 1184
Query: 721 DLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDS-SP 779
DLG LKYFLG+E+A S GI L QRKY LDLL D G+LG +P +TP D + KL +S +P
Sbjct: 1185 DLGQLKYFLGIEIARSPRGIVLSQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNP 1244
Query: 780 LFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGR 839
+ + Y+RLVGRLIYL TRPDIT+ +S+++ P H +A R+++YLKGSPG+
Sbjct: 1245 V--NKERYQRLVGRLIYLCHTRPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGK 1302
Query: 840 GIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSSEAE 899
G++F ++ L ++GY +A WA C D RRS S C F+G +L+SWR+KK P +SR ++EAE
Sbjct: 1303 GLWFKKNGHLEVEGYCDAHWASCPDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAE 1362
Query: 900 YRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
YRAM+ + EL WL LL +L + + L+CDN+S + IA NP H R
Sbjct: 1363 YRAMSVSLSELLWLRNLLSELMLPVDTPMKLWCDNKSAISIANNPVQHDR 1412
Score = 144 bits (363), Expect = 2e-32
Identities = 78/213 (36%), Positives = 123/213 (57%), Gaps = 6/213 (2%)
Query: 3 HFRLGHLSNQRLSKMHQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELLYFD 62
H RLGH+S + +SKM + S + CD C + K + Y + F L++ D
Sbjct: 505 HCRLGHISFEIMSKMFPVEFSKVDKHMLICDACEYGKHTRTSYVSRGLRSILPFMLIHSD 564
Query: 63 IW-GPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPKF 121
+W P+ S+ G KYF+T +D +SR W+ L+++K EV + F I H + +F
Sbjct: 565 VWTSPVV--SMSGMKYFVTFIDCYSRMTWLYLMRHKDEVLKCFQNFYAYIKNHFNARVQF 622
Query: 122 IRSDNGPEFLLLEF---YASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
IR+DNG E++ EF + +GI+HQ SC +TP QN ERK++H+L +AR+L + +P
Sbjct: 623 IRTDNGGEYMNSEFGHFLSLEGILHQTSCPDTPPQNGVAERKNRHLLEIARSLMYTMNVP 682
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLY 211
WS AV+ + +LINR P+ L K+PY +++
Sbjct: 683 KFLWSEAVMTAAYLINRTPSRILGMKTPYEMIF 715
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.340 0.149 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,580,665,467
Number of Sequences: 2540612
Number of extensions: 62873973
Number of successful extensions: 225762
Number of sequences better than 10.0: 2057
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 457
Number of HSP's that attempted gapping in prelim test: 218948
Number of HSP's gapped (non-prelim): 3549
length of query: 1021
length of database: 863,360,394
effective HSP length: 138
effective length of query: 883
effective length of database: 512,755,938
effective search space: 452763493254
effective search space used: 452763493254
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 80 (35.4 bits)
Medicago: description of AC136506.7