BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136502.1 + phase: 0
(64 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR24673.1| At5g62200 [Arabidopsis thaliana] gi|15241727|ref|... 78 7e-14
dbj|BAA97184.1| unnamed protein product [Arabidopsis thaliana] 78 7e-14
dbj|BAD43699.1| unknown protein [Arabidopsis thaliana] 78 7e-14
gb|AAP12864.1| At5g62210 [Arabidopsis thaliana] gi|26450767|dbj|... 75 6e-13
gb|AAM63873.1| embryo-specific protein-like [Arabidopsis thalian... 75 6e-13
dbj|BAD94228.1| hypothetical protein [Arabidopsis thaliana] gi|6... 68 7e-11
gb|AAC23732.1| unknown protein [Arabidopsis thaliana] gi|7487450... 68 7e-11
emb|CAB87275.1| embryo-specific protein 3 (ATS3) [Arabidopsis th... 63 2e-09
gb|AAL47396.1| embryo-specific protein 3 (ATS3) [Arabidopsis tha... 63 2e-09
gb|AAC27073.1| embryo-specific protein 3 [Arabidopsis thaliana] 63 2e-09
dbj|BAD44416.1| unknown protein [Arabidopsis thaliana] 60 1e-08
gb|AAU44333.1| unknown protein [Oryza sativa (japonica cultivar-... 51 7e-06
ref|NP_916465.1| unknown protein [Oryza sativa (japonica cultiva... 50 2e-05
>gb|AAR24673.1| At5g62200 [Arabidopsis thaliana] gi|15241727|ref|NP_201026.1|
embryo-specific protein-related [Arabidopsis thaliana]
gi|51970212|dbj|BAD43798.1| unknown protein [Arabidopsis
thaliana] gi|51968404|dbj|BAD42894.1| unknown protein
[Arabidopsis thaliana]
Length = 190
Score = 77.8 bits (190), Expect = 7e-14
Identities = 34/60 (56%), Positives = 42/60 (69%)
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCN 62
+F I G C IC +YL+R G +GWIP TV Y++G V F YNTYVPE+V YGFN+CN
Sbjct: 100 TFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCN 159
>dbj|BAA97184.1| unnamed protein product [Arabidopsis thaliana]
Length = 231
Score = 77.8 bits (190), Expect = 7e-14
Identities = 34/60 (56%), Positives = 42/60 (69%)
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCN 62
+F I G C IC +YL+R G +GWIP TV Y++G V F YNTYVPE+V YGFN+CN
Sbjct: 100 TFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCN 159
>dbj|BAD43699.1| unknown protein [Arabidopsis thaliana]
Length = 180
Score = 77.8 bits (190), Expect = 7e-14
Identities = 34/60 (56%), Positives = 42/60 (69%)
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCN 62
+F I G C IC +YL+R G +GWIP TV Y++G V F YNTYVPE+V YGFN+CN
Sbjct: 90 TFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCN 149
>gb|AAP12864.1| At5g62210 [Arabidopsis thaliana] gi|26450767|dbj|BAC42492.1|
embryo-specific protein like [Arabidopsis thaliana]
Length = 227
Score = 74.7 bits (182), Expect = 6e-13
Identities = 31/60 (51%), Positives = 42/60 (69%)
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCN 62
+F + G+CLN IC +Y++R G++GWIP TV Y G VKF +N VPEN+ YG N+CN
Sbjct: 98 TFQVKGKCLNTICSVYIYRSGTDGWIPETVEIYKEGSKSVKFDFNKNVPENIWYGNNYCN 157
>gb|AAM63873.1| embryo-specific protein-like [Arabidopsis thaliana]
gi|8809634|dbj|BAA97185.1| unnamed protein product
[Arabidopsis thaliana] gi|15241758|ref|NP_201027.1|
embryo-specific protein-related [Arabidopsis thaliana]
Length = 223
Score = 74.7 bits (182), Expect = 6e-13
Identities = 31/60 (51%), Positives = 42/60 (69%)
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCN 62
+F + G+CLN IC +Y++R G++GWIP TV Y G VKF +N VPEN+ YG N+CN
Sbjct: 94 TFQVKGKCLNTICSVYIYRSGTDGWIPETVEIYKEGSKSVKFDFNKNVPENIWYGNNYCN 153
>dbj|BAD94228.1| hypothetical protein [Arabidopsis thaliana]
gi|62320996|dbj|BAD94040.1| hypothetical protein
[Arabidopsis thaliana] gi|51969672|dbj|BAD43528.1|
unknown protein [Arabidopsis thaliana]
gi|51969372|dbj|BAD43378.1| unknown protein [Arabidopsis
thaliana] gi|51968470|dbj|BAD42927.1| unknown protein
[Arabidopsis thaliana]
Length = 179
Score = 67.8 bits (164), Expect = 7e-11
Identities = 29/62 (46%), Positives = 38/62 (60%)
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCN 62
++ I G C+ D+C LYL R GS+GW P V Y V FYYN ++P +V YGFN CN
Sbjct: 100 TYKISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCN 159
Query: 63 EV 64
+
Sbjct: 160 GI 161
>gb|AAC23732.1| unknown protein [Arabidopsis thaliana] gi|7487450|pir||T02442
hypothetical protein At2g41470 [imported] - Arabidopsis
thaliana gi|15227355|ref|NP_181678.1| embryo-specific
protein-related [Arabidopsis thaliana]
Length = 365
Score = 67.8 bits (164), Expect = 7e-11
Identities = 29/62 (46%), Positives = 38/62 (60%)
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCN 62
++ I G C+ D+C LYL R GS+GW P V Y V FYYN ++P +V YGFN CN
Sbjct: 100 TYKISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCN 159
Query: 63 EV 64
+
Sbjct: 160 GI 161
>emb|CAB87275.1| embryo-specific protein 3 (ATS3) [Arabidopsis thaliana]
gi|15240721|ref|NP_196336.1| embryo-specific protein 3,
putative [Arabidopsis thaliana] gi|11357280|pir||T48490
embryo-specific protein 3 (ATS3) - Arabidopsis thaliana
Length = 213
Score = 63.2 bits (152), Expect = 2e-09
Identities = 29/62 (46%), Positives = 42/62 (66%), Gaps = 2/62 (3%)
Query: 3 SFDIVGQCLND-ICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPE-NVDYGFNH 60
+F + GQCLND IC LY++R G +GW+P ++ Y+ G VKF ++ VP+ N YG N+
Sbjct: 88 TFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNN 147
Query: 61 CN 62
CN
Sbjct: 148 CN 149
>gb|AAL47396.1| embryo-specific protein 3 (ATS3) [Arabidopsis thaliana]
gi|13877521|gb|AAK43838.1| embryo-specific protein 3;
ATS3 [Arabidopsis thaliana]
Length = 213
Score = 63.2 bits (152), Expect = 2e-09
Identities = 29/62 (46%), Positives = 42/62 (66%), Gaps = 2/62 (3%)
Query: 3 SFDIVGQCLND-ICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPE-NVDYGFNH 60
+F + GQCLND IC LY++R G +GW+P ++ Y+ G VKF ++ VP+ N YG N+
Sbjct: 88 TFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNN 147
Query: 61 CN 62
CN
Sbjct: 148 CN 149
>gb|AAC27073.1| embryo-specific protein 3 [Arabidopsis thaliana]
Length = 213
Score = 63.2 bits (152), Expect = 2e-09
Identities = 29/62 (46%), Positives = 42/62 (66%), Gaps = 2/62 (3%)
Query: 3 SFDIVGQCLND-ICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPE-NVDYGFNH 60
+F + GQCLND IC LY++R G +GW+P ++ Y+ G VKF ++ VP+ N YG N+
Sbjct: 88 TFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNN 147
Query: 61 CN 62
CN
Sbjct: 148 CN 149
>dbj|BAD44416.1| unknown protein [Arabidopsis thaliana]
Length = 72
Score = 60.5 bits (145), Expect = 1e-08
Identities = 26/54 (48%), Positives = 33/54 (60%)
Query: 11 LNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCNEV 64
+ D+C LYL R GS+GW P V Y V FYYN ++P +V YGFN CN +
Sbjct: 1 MRDVCYLYLLRQGSDGWKPENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCNGI 54
>gb|AAU44333.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 180
Score = 51.2 bits (121), Expect = 7e-06
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYN----YGYPPVKFYYNTYVPENVDYGF 58
+F + GQC +C LYL R G +GW P V + G P FY+ + +P+ V YG
Sbjct: 98 AFRVGGQCGYGVCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSPLPDGVWYGH 157
Query: 59 NHC 61
N C
Sbjct: 158 NRC 160
>ref|NP_916465.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|15128219|dbj|BAB62547.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 191
Score = 50.1 bits (118), Expect = 2e-05
Identities = 25/60 (41%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYN-YGYPPVKFYYNTYVPENVDYGFNHC 61
+F + G C +C LYL R G +GW P V Y P FYY +P V YGFN C
Sbjct: 122 TFRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNRC 181
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.144 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,983,096
Number of Sequences: 2540612
Number of extensions: 5005367
Number of successful extensions: 8810
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8792
Number of HSP's gapped (non-prelim): 13
length of query: 64
length of database: 863,360,394
effective HSP length: 40
effective length of query: 24
effective length of database: 761,735,914
effective search space: 18281661936
effective search space used: 18281661936
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC136502.1