BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136451.10 - phase: 0 /pseudo
(820 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 83 4e-14
gb|AAU89733.1| hypothetical protein [Solanum tuberosum] 79 5e-13
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 79 8e-13
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 78 1e-12
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 76 4e-12
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 74 3e-11
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 74 3e-11
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 73 3e-11
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 73 4e-11
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 73 4e-11
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 72 6e-11
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 72 6e-11
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 72 6e-11
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 72 7e-11
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 72 7e-11
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 72 1e-10
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 71 1e-10
emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar... 71 2e-10
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 70 2e-10
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 70 4e-10
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 82.8 bits (203), Expect = 4e-14
Identities = 47/118 (39%), Positives = 64/118 (53%), Gaps = 3/118 (2%)
Query: 694 FFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRV 753
F+ ND +KI W+ W +CL KE GGLG R I FN ALL K +W +L + L+ R+
Sbjct: 673 FWWSANDHQRKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARL 732
Query: 754 LVARYGEEGGRL-LDGGRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWV 810
+ +RY G L D G S WR+I LH + + VGNG++I W D W+
Sbjct: 733 IKSRYFPVGEFLDSDVGSRPSFGWRSI--LHGRDLLCRGLVKRVGNGKSIRVWIDYWL 788
>gb|AAU89733.1| hypothetical protein [Solanum tuberosum]
Length = 327
Score = 79.3 bits (194), Expect = 5e-13
Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 697 GGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRVLVA 756
G N DHK I V W V L K+ GGLG++ + N LL KW W E LW V+ A
Sbjct: 114 GNNKDHK-IHLVKWAKVTLPKQYGGLGIKDLALHNKCLLLKWHWRYNQEAAGLWKEVIQA 172
Query: 757 RYGEEGGRLLDGGRTA--SAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWVG 811
+YG + + T+ + WR I L E +FG + VGNGE+I FW D+W+G
Sbjct: 173 KYGSDSHWCSNKVSTSYGTGVWRDIRKLW-EIFFG-DASLMVGNGEHIQFWKDIWLG 227
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 78.6 bits (192), Expect = 8e-13
Identities = 44/120 (36%), Positives = 66/120 (54%), Gaps = 4/120 (3%)
Query: 694 FFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRV 753
F G + +K+ + W+ VCL K GGLG+R R N ALL K W ++ ++ SLW RV
Sbjct: 73 FLWGSTPEKRKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARV 132
Query: 754 LVARYGEEGGR---LLDGGRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWV 810
L ++Y G R ++ R AS+ WR+I + E + VG+G++I FW D W+
Sbjct: 133 LRSKYRIGGLRDTTWINTKRNASSTWRSIKSGLREVVI-PGMNWVVGDGKDICFWDDKWL 191
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 77.8 bits (190), Expect = 1e-12
Identities = 52/149 (34%), Positives = 75/149 (49%), Gaps = 13/149 (8%)
Query: 663 SMSCHLCLFTLFPSSRLPQVSSPLLNLF*IIFFLGGNDDHK-KITWVDWNYVCLSKEVGG 721
SMSC L P + Q++S + +F N K KI WV W+ + K++GG
Sbjct: 259 SMSCFL-----LPMRLIHQITSAMR------WFWWSNTKVKHKIPWVAWSKLNDPKKMGG 307
Query: 722 LGVRRIREFNSALLGKWSWMVLVEKESLWYRVLVARYGEEGGRLLDGGRTASAWWRAIAT 781
L +R +++FN ALL K SW +L + SL RV A+Y + RLLD T+ + + +
Sbjct: 308 LAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPK-ERLLDAKATSQSSYAWKSI 366
Query: 782 LHSEAWFGTNVKRSVGNGENIYFWSDVWV 810
LH +K GNG NI W D W+
Sbjct: 367 LHGTKLISRGLKYIAGNGNNIQLWKDNWL 395
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 76.3 bits (186), Expect = 4e-12
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 678 RLPQVSSPLLNLF*IIFFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGK 737
RLP+ + L F+ N D + + W+ W+ +C SK GGLG R + +FNSALL K
Sbjct: 593 RLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAK 652
Query: 738 WSWMVLVEKESLWYRVLVARYGEEGGRLLD-GGRTASAWWRAIATLHSEAWFGTNVKRSV 796
W ++ +SL+ +V RY + L + S WR++ + S + G +KR V
Sbjct: 653 QLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGL-IKR-V 710
Query: 797 GNGENIYFWSDVWV 810
G+G +I W+D W+
Sbjct: 711 GSGASISVWNDPWI 724
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411640|pir||H84529 hypothetical protein
At2g15510 [imported] - Arabidopsis thaliana
Length = 1138
Score = 73.6 bits (179), Expect = 3e-11
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 701 DHKKIT-WVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRVLVARYG 759
+HK+ T WV W +CL+KE GGLG R I FN ALL K SW +L L+ R +RY
Sbjct: 607 EHKRKTHWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYPSFLFARFFKSRYF 666
Query: 760 EEGGRLLDGGRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWV 810
++ L+ + + L +++ VGNG+++ W D W+
Sbjct: 667 DD-EEFLEADLGVRPSYACCSILFGRELLAKGLRKEVGNGKSLNVWMDPWI 716
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 73.6 bits (179), Expect = 3e-11
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 678 RLPQVSSPLLNLF*IIFFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGK 737
RLP+ ++ F F + +K V+W VC ++ GGLGV + N A+LGK
Sbjct: 615 RLPKGVQERIDYFRKRFLWQEDQGIRKYHLVNWPLVCSPRDQGGLGVLDLEAMNKAMLGK 674
Query: 738 WSWMVLVEKESLWYRVLVARYGEE----GGRLLDGGRTASAWWRAIATLHSEAWFGTNVK 793
W W L +E W ++ A+Y + G RL G +S +W+ + + + F +
Sbjct: 675 WIWR-LENEEGWWQEIIYAKYCSDKPLSGLRLKAG---SSHFWQGVMEVKDD--FFSFCT 728
Query: 794 RSVGNGENIYFWSDVWVGG 812
+ VGNGE FW D W+GG
Sbjct: 729 KIVGNGEKTLFWEDSWLGG 747
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 73.2 bits (178), Expect = 3e-11
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 701 DHKKIT-WVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRVLVARYG 759
+HK+ T WV +CLSKE GGLG R I FN ALL K +W +L SL+ R +RY
Sbjct: 833 EHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFFKSRYY 892
Query: 760 EEGGRL-LDGGRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWV 810
+E L + T S WR+I LH ++ VGNG + W D W+
Sbjct: 893 DEEDFLDAELKATPSYAWRSI--LHGRDLLIKGFRKKVGNGSSTSVWMDPWI 942
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 72.8 bits (177), Expect = 4e-11
Identities = 42/125 (33%), Positives = 64/125 (50%), Gaps = 5/125 (4%)
Query: 694 FFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRV 753
F+ D +KI W W +CL K+ GGLG R I+ FN ALL K +W +L + L R+
Sbjct: 791 FWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRL 850
Query: 754 LVARYGEEGGRLLDG--GRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWVG 811
L +RY + LD + S WR+I L +++ VG+G +++ W D W+
Sbjct: 851 LKSRY-FDATDFLDAALSQRPSFGWRSI--LFGRELLSKGLQKRVGDGASLFVWIDPWID 907
Query: 812 GVSFK 816
F+
Sbjct: 908 DNGFR 912
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 72.8 bits (177), Expect = 4e-11
Identities = 42/125 (33%), Positives = 64/125 (50%), Gaps = 5/125 (4%)
Query: 694 FFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRV 753
F+ D +KI W W +CL K+ GGLG R I+ FN ALL K +W +L + L R+
Sbjct: 788 FWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRL 847
Query: 754 LVARYGEEGGRLLDG--GRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWVG 811
L +RY + LD + S WR+I L +++ VG+G +++ W D W+
Sbjct: 848 LKSRY-FDATDFLDAALSQRPSFGWRSI--LFGRELLSKGLQKRVGDGASLFVWIDPWID 904
Query: 812 GVSFK 816
F+
Sbjct: 905 DNGFR 909
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 72.4 bits (176), Expect = 6e-11
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 694 FFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRV 753
F+ + + + W W ++ K VGGLG + I FN ALLGK W ++ EK+SL +V
Sbjct: 825 FWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKV 884
Query: 754 LVARYGEEGGRLLD--GGRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWVG 811
+RY + L G R + AW + ++ ++ +GNGE I W+D W+G
Sbjct: 885 FKSRYFSKSDPLNAPLGSRPSFAW---KSIYEAQVLIKQGIRAVIGNGETINVWTDPWIG 941
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 72.4 bits (176), Expect = 6e-11
Identities = 44/132 (33%), Positives = 65/132 (48%), Gaps = 22/132 (16%)
Query: 679 LPQVSSPLLNLF*IIFFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKW 738
LPQ + L+ +F LG + + KK+ V W+ VCL K GGLG+R + N AL+ K
Sbjct: 487 LPQSTLEGLDKLARVFLLGSSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKV 546
Query: 739 SWMVLVEKESLWYRVLVARYGEEGGRLLDGGRTASAWWRAIATLHSEAWFGTNVKRSVGN 798
W ++ ++ SLW R+L ++Y ++ G S W VGN
Sbjct: 547 GWRLINDRYSLWARILRSKYRVGLREVVSRG---SRW-------------------VVGN 584
Query: 799 GENIYFWSDVWV 810
G +I FWSD W+
Sbjct: 585 GRDILFWSDNWL 596
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 72.4 bits (176), Expect = 6e-11
Identities = 47/119 (39%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 703 KKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRVLVARY--GE 760
KK V W+ VC K+ GGLGVR + N AL+ K W +L EK SLW VL +Y GE
Sbjct: 191 KKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGE 250
Query: 761 -EGGRLLDGGRTASAWWRAIA------TLHSEAWFGTNVKRSVGNGENIYFWSDVWVGG 812
R L + S+ WR+IA H W G+G+ I FW+D WV G
Sbjct: 251 IRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWI-------PGDGQQIRFWTDRWVSG 302
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 72.0 bits (175), Expect = 7e-11
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 678 RLPQVSSPLLNLF*IIFFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGK 737
+LP+ L + F+ +KI W+ W + L K+ GG G + ++ FN ALL K
Sbjct: 787 KLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAK 846
Query: 738 WSWMVLVEKESLWYRVLVARYGEEGGRL-LDGGRTASAWWRAIATLHSEAWFGTNVKRSV 796
+W VL EK SL+ RV +RY L G S WR+I L ++ +
Sbjct: 847 QAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSI--LFGRELLMQGLRTVI 904
Query: 797 GNGENIYFWSDVWV 810
GNG+ + W+D W+
Sbjct: 905 GNGQKTFVWTDKWL 918
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 72.0 bits (175), Expect = 7e-11
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 678 RLPQVSSPLLNLF*IIFFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGK 737
+LP+ L + F+ +KI W+ W + L K+ GG G + ++ FN ALL K
Sbjct: 808 KLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAK 867
Query: 738 WSWMVLVEKESLWYRVLVARYGEEGGRL-LDGGRTASAWWRAIATLHSEAWFGTNVKRSV 796
+W VL EK SL+ RV +RY L G S WR+I L ++ +
Sbjct: 868 QAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSI--LFGRELLMQGLRTVI 925
Query: 797 GNGENIYFWSDVWV 810
GNG+ + W+D W+
Sbjct: 926 GNGQKTFVWTDKWL 939
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 71.6 bits (174), Expect = 1e-10
Identities = 40/127 (31%), Positives = 61/127 (47%), Gaps = 3/127 (2%)
Query: 694 FFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRV 753
FF G + +K + W +C KE GGLG R+ N ALL KW + + KE +
Sbjct: 362 FFWEGLEKKRKYHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVL 421
Query: 754 LVARYGEEGGRLLDG-GRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWVGG 812
L +Y ++GG +S +W+ + + + W VGNG+ FWSDVW+G
Sbjct: 422 LRNKYMKDGGGFFQSKAEESSQFWKGLHEV--KKWMDLGSSYKVGNGKATNFWSDVWIGE 479
Query: 813 VSFKERF 819
K ++
Sbjct: 480 TPLKTQY 486
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 71.2 bits (173), Expect = 1e-10
Identities = 43/134 (32%), Positives = 67/134 (49%), Gaps = 3/134 (2%)
Query: 678 RLPQVSSPLLNLF*IIFFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGK 737
RLP+ + L F+ + + + + W+ WN +C SK GGLG R + +FNSALL K
Sbjct: 659 RLPKTITSKLTSAVAKFWWSSDGESRGMHWMAWNKLCSSKADGGLGFRSVNDFNSALLAK 718
Query: 738 WSWMVLVEKESLWYRVLVARYGEEGGRLLD-GGRTASAWWRAIATLHSEAWFGTNVKRSV 796
W ++ +SL+ +V RY + L + S WR+I + S G + V
Sbjct: 719 QLWRLITVPDSLFAKVFKGRYFRKSNPLDKLKSYSPSYGWRSIISARSLVKKG--LINRV 776
Query: 797 GNGENIYFWSDVWV 810
G+G +I W D W+
Sbjct: 777 GSGASISVWEDPWI 790
>emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar-group)]
Length = 633
Score = 70.9 bits (172), Expect = 2e-10
Identities = 40/126 (31%), Positives = 58/126 (45%), Gaps = 2/126 (1%)
Query: 694 FFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRV 753
++ GN + K V W + K+ GGLG R N ALL KW + + +SL +
Sbjct: 347 YYWAGNKINGKYHMVKWEDMAFPKDFGGLGFTETRAMNIALLAKWIFKLESPDQSLCTSL 406
Query: 754 LVARYGEEGGRLLDGGRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWVGGV 813
L +Y +EGG S +W+ + L + W + VG+G +I FW DVWV
Sbjct: 407 LRNKYLQEGGVFQCRAEEGSQFWKGV--LSTRDWVKLGTEWLVGDGRHILFWKDVWVHPC 464
Query: 814 SFKERF 819
K F
Sbjct: 465 PLKTSF 470
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 70.5 bits (171), Expect = 2e-10
Identities = 39/116 (33%), Positives = 55/116 (46%), Gaps = 2/116 (1%)
Query: 704 KITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRVLVARYGEEGG 763
K V W + K+ GGLG R N+ALL KW + E +SL +L +Y ++GG
Sbjct: 1460 KYHMVKWEDLAFPKDYGGLGFTETRRMNTALLAKWIMKIESEDDSLCIELLRRKYLQDGG 1519
Query: 764 RLLDGGRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWVGGVSFKERF 819
R AS +W+ + L+ W VG+G +I FW DVW G + F
Sbjct: 1520 FFQCKERYASQFWKGL--LNIRRWLSLGSVWQVGDGSHISFWRDVWWGQCPLRTLF 1573
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 69.7 bits (169), Expect = 4e-10
Identities = 40/118 (33%), Positives = 58/118 (48%), Gaps = 3/118 (2%)
Query: 694 FFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRV 753
F+ G +K W W + SK +GGLG + IR FN ALL + +W ++ +SL RV
Sbjct: 1194 FWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARV 1253
Query: 754 LVARYGEEGGRL-LDGGRTASAWWRAIATLHSEAWFGTNVKRSVGNGENIYFWSDVWV 810
L A+Y G + G AS W+AI H + +GNG ++ W D W+
Sbjct: 1254 LKAKYYPNGSIVDTSFGGNASPGWQAIE--HGLELVKKGIIWRIGNGRSVRVWQDPWL 1309
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.361 0.164 0.647
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,264,720,874
Number of Sequences: 2540612
Number of extensions: 49796054
Number of successful extensions: 161013
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 160693
Number of HSP's gapped (non-prelim): 229
length of query: 820
length of database: 863,360,394
effective HSP length: 137
effective length of query: 683
effective length of database: 515,296,550
effective search space: 351947543650
effective search space used: 351947543650
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 79 (35.0 bits)
Medicago: description of AC136451.10