BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136286.5 + phase: 1 /partial
(107 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG48815.1| putative DNA-binding protein p24 [Arabidopsis tha... 90 2e-17
gb|AAU15140.1| At2g02740 [Arabidopsis thaliana] gi|51536442|gb|A... 82 3e-15
gb|AAF91282.1| DNA-binding protein p24 [Solanum tuberosum] 82 3e-15
pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regul... 82 4e-15
pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regul... 82 4e-15
pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regul... 82 4e-15
pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regul... 82 4e-15
dbj|BAD68773.1| putative DNA-binding protein p24 [Oryza sativa (... 73 2e-12
gb|AAG51881.1| unknown protein; 79476-81015 [Arabidopsis thalian... 67 1e-10
gb|AAM67494.1| unknown protein [Arabidopsis thaliana] gi|1817581... 67 1e-10
dbj|BAD28177.1| putative Chain C, Structure Of The Plant Transcr... 59 3e-08
gb|AAC05348.1| hypothetical protein [Arabidopsis thaliana] gi|74... 33 2.2
>gb|AAG48815.1| putative DNA-binding protein p24 [Arabidopsis thaliana]
gi|16323418|gb|AAL15203.1| putative DNA-binding protein
p24 [Arabidopsis thaliana] gi|13877787|gb|AAK43971.1|
putative DNA-binding protein p24 [Arabidopsis thaliana]
gi|15223748|ref|NP_172893.1| DNA-binding protein-related
[Arabidopsis thaliana] gi|7262683|gb|AAF43941.1|
Contains similarity to a hypothetical protein from
Arabidopsis thaliana gb|AC002521.2. EST gb|AI995686
comes from this gene gi|25518621|pir||F86278
hypothetical protein F14L17.18 - Arabidopsis thaliana
Length = 263
Score = 89.7 bits (221), Expect = 2e-17
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 3 LPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNR 62
LPAR +V S+YKGKA L V P P+F + DSG FK+SK+G +LLQF PSAG RQYDW++
Sbjct: 77 LPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSK 136
Query: 63 KQV 65
KQV
Sbjct: 137 KQV 139
>gb|AAU15140.1| At2g02740 [Arabidopsis thaliana] gi|51536442|gb|AAU05459.1|
At2g02740 [Arabidopsis thaliana]
gi|42568881|ref|NP_178377.2| transcription factor,
putative [Arabidopsis thaliana]
Length = 268
Score = 82.0 bits (201), Expect = 3e-15
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQV 65
R +V S+YKGKA L + P P+F + +SG FK++KEG +LLQF P+AG RQYDW+RKQV
Sbjct: 84 RFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQV 143
>gb|AAF91282.1| DNA-binding protein p24 [Solanum tuberosum]
Length = 274
Score = 82.0 bits (201), Expect = 3e-15
Identities = 37/65 (56%), Positives = 48/65 (72%)
Query: 1 GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 60
G +V V S+YKGKA L V P P+F+ DSG FK+S+EG+++LQF P+AG RQYDW
Sbjct: 86 GASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDW 145
Query: 61 NRKQV 65
+RKQV
Sbjct: 146 SRKQV 150
>pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 171
Score = 81.6 bits (200), Expect = 4e-15
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQV 65
+V V S+YKGKA L V P P+F+ DSG FK+S+EG+++LQF P+AG RQYDW+RKQV
Sbjct: 3 KVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQV 62
>pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 182
Score = 81.6 bits (200), Expect = 4e-15
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQV 65
+V V S+YKGKA L V P P+F+ DSG FK+S+EG+++LQF P+AG RQYDW+RKQV
Sbjct: 3 KVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQV 62
>pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 170
Score = 81.6 bits (200), Expect = 4e-15
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQV 65
+V V S+YKGKA L V P P+F+ DSG FK+S+EG+++LQF P+AG RQYDW+RKQV
Sbjct: 3 KVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQV 62
>pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 166
Score = 81.6 bits (200), Expect = 4e-15
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQV 65
+V V S+YKGKA L V P P+F+ DSG FK+S+EG+++LQF P+AG RQYDW+RKQV
Sbjct: 3 KVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQV 62
>dbj|BAD68773.1| putative DNA-binding protein p24 [Oryza sativa (japonica
cultivar-group)] gi|55296373|dbj|BAD68418.1| putative
DNA-binding protein p24 [Oryza sativa (japonica
cultivar-group)]
Length = 272
Score = 72.8 bits (177), Expect = 2e-12
Identities = 35/73 (47%), Positives = 46/73 (62%), Gaps = 2/73 (2%)
Query: 1 GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 60
G+ RV + S+YKGKA + + P P+F DSG +K+ KEG +LLQF P+ RQYDW
Sbjct: 86 GQQNGRVFSTYSIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDW 145
Query: 61 NRKQVSYCSFIIW 73
RKQV S +W
Sbjct: 146 TRKQV--FSLSVW 156
>gb|AAG51881.1| unknown protein; 79476-81015 [Arabidopsis thaliana]
gi|25406108|pir||C96737 unknown protein F3I17.9
[imported] - Arabidopsis thaliana
Length = 237
Score = 66.6 bits (161), Expect = 1e-10
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQ 64
R+ S++KGKA L V PVLP FT DSG +I + G +++ F+P+ G R+YDW +KQ
Sbjct: 52 RLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQ 110
>gb|AAM67494.1| unknown protein [Arabidopsis thaliana] gi|18175814|gb|AAL59932.1|
unknown protein [Arabidopsis thaliana]
gi|22330568|ref|NP_177282.2| expressed protein
[Arabidopsis thaliana]
Length = 238
Score = 66.6 bits (161), Expect = 1e-10
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQ 64
R+ S++KGKA L V PVLP FT DSG +I + G +++ F+P+ G R+YDW +KQ
Sbjct: 53 RLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQ 111
>dbj|BAD28177.1| putative Chain C, Structure Of The Plant Transcriptional Regulator
Pbf-2 [Oryza sativa (japonica cultivar-group)]
gi|50251252|dbj|BAD28032.1| putative Chain C, Structure
Of The Plant Transcriptional Regulator Pbf-2 [Oryza
sativa (japonica cultivar-group)]
Length = 228
Score = 58.9 bits (141), Expect = 3e-08
Identities = 25/60 (41%), Positives = 42/60 (69%)
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQV 65
R S +V+KGKA L + P+LP F+ +SG +++K G ++L F P+ G R+YD+++KQ+
Sbjct: 45 RKFASYTVFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQL 104
>gb|AAC05348.1| hypothetical protein [Arabidopsis thaliana] gi|7459231|pir||T00854
hypothetical protein At2g02740 [imported] - Arabidopsis
thaliana
Length = 192
Score = 32.7 bits (73), Expect = 2.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKIS 40
R +V S+YKGKA L + P P+F + + KI+
Sbjct: 84 RFYVGHSIYKGKAALTIEPRAPEFVALEIVMMKIN 118
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.331 0.142 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,022,474
Number of Sequences: 2540612
Number of extensions: 6260574
Number of successful extensions: 12675
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12663
Number of HSP's gapped (non-prelim): 12
length of query: 107
length of database: 863,360,394
effective HSP length: 83
effective length of query: 24
effective length of database: 652,489,598
effective search space: 15659750352
effective search space used: 15659750352
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC136286.5