BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136141.8 - phase: 0
(339 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO23078.1| polyprotein [Glycine max] 122 2e-26
gb|AAD39272.1| Similar to retrotransposon polyprotein [Arabidops... 117 6e-25
gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsi... 116 8e-25
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 113 7e-24
gb|AAD24647.1| putative retroelement pol polyprotein [Arabidopsi... 113 9e-24
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 111 3e-23
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 110 5e-23
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana] 110 5e-23
ref|XP_507143.1| PREDICTED OJ1449_C01.20 gene product [Oryza sat... 108 2e-22
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 107 5e-22
ref|XP_475616.1| putative gag-pol polyprotein [Oryza sativa (jap... 107 7e-22
emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa (japonica cultiva... 107 7e-22
gb|AAS55774.2| putative polyprotein [Oryza sativa (japonica cult... 107 7e-22
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 106 1e-21
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa... 105 2e-21
emb|CAE05537.2| OSJNBa0053B21.11 [Oryza sativa (japonica cultiva... 105 3e-21
gb|AAL68644.1| polyprotein [Oryza sativa (japonica cultivar-group)] 104 3e-21
ref|XP_476235.1| unknown protein [Oryza sativa (japonica cultiva... 104 4e-21
gb|AAP68389.1| putative polyprotein [Oryza sativa (japonica cult... 103 7e-21
gb|AAN59765.1| Putative retroelement [Oryza sativa (japonica cul... 103 7e-21
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 122 bits (305), Expect = 2e-26
Identities = 65/148 (43%), Positives = 95/148 (63%), Gaps = 5/148 (3%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPF ALYGR PP++ ++ L + +L +K NL R++Q M A++K
Sbjct: 1287 MTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKK 1346
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R D +F +G V ++LQ YRQH+ R + KL+ RY+GPF +L +IG VAY+L+LP ++R
Sbjct: 1347 RLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLELPSAAR 1406
Query: 121 IHPVIHVSQLREYHG--QDPDGHFRPIP 146
IHPV HVSQL+ ++G QDP + P+P
Sbjct: 1407 IHPVFHVSQLKPFNGTAQDP---YLPLP 1431
>gb|AAD39272.1| Similar to retrotransposon polyprotein [Arabidopsis thaliana]
gi|25405116|pir||H96498 hypothetical protein T10P12.3
[imported] - Arabidopsis thaliana
Length = 1264
Score = 117 bits (292), Expect = 6e-25
Identities = 61/135 (45%), Positives = 88/135 (65%)
Query: 2 TPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQKR 61
+PF+ +YGR PPS+ + G T L+ L + +L I+ NL+R+++ M A+ KR
Sbjct: 992 SPFKVVYGRDPPSLVRFELGSTDNWDLEVQLKERDLMLEHIRANLQRAQEIMKRNADMKR 1051
Query: 62 KDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSRI 121
+D F VG V L+LQ YRQ TV RR KLA +++GPF I+ RIG VAY ++LP SS+I
Sbjct: 1052 RDVVFAVGDWVHLKLQPYRQRTVVRRPCYKLAAKFFGPFEIVERIGNVAYRINLPASSKI 1111
Query: 122 HPVIHVSQLREYHGQ 136
H V +VSQL++ G+
Sbjct: 1112 HNVFNVSQLKKVFGE 1126
>gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411577|pir||F84519 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 945
Score = 116 bits (291), Expect = 8e-25
Identities = 64/147 (43%), Positives = 90/147 (60%), Gaps = 2/147 (1%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPF+ALYGRPP I Y G +L+ +A + +L +K++L + M A+ +
Sbjct: 733 MTPFQALYGRPPSPIPAYELGSVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSR 792
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
+D +F VG V LR+Q YRQ T+ RR+S KL+ R+YGPF + + G VAY L LP +R
Sbjct: 793 LRDVSFQVGDWVLLRIQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTR 852
Query: 121 IHPVIHVSQLREYHGQ-DPD-GHFRPI 145
IHPV HVS L+ + G +PD G P+
Sbjct: 853 IHPVFHVSLLKPWVGDGEPDMGQLPPL 879
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 113 bits (283), Expect = 7e-24
Identities = 57/130 (43%), Positives = 85/130 (64%)
Query: 2 TPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQKR 61
TPF+A+YGR PP + Y T ++ L + +L ++ENLE ++ +M A++ R
Sbjct: 1413 TPFQAVYGREPPVLLRYGDIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKAADKSR 1472
Query: 62 KDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSRI 121
+D F + + V+L+L+ YRQ +V R + KL++RY+GPF +L RIG VAY+L LP S I
Sbjct: 1473 RDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPEHSTI 1532
Query: 122 HPVIHVSQLR 131
HPV HVSQL+
Sbjct: 1533 HPVFHVSQLK 1542
>gb|AAD24647.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411181|pir||F84470 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 780
Score = 113 bits (282), Expect = 9e-24
Identities = 56/131 (42%), Positives = 88/131 (66%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTP+EA+YG+PPP Y+ G + V + ++ E ++ +K +L R++ RM LA+Q
Sbjct: 625 MTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQH 684
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
+ F VG V+++LQ YRQ +V R++ KL+ +Y+GP+ ++ R G VAY+L LP +S+
Sbjct: 685 ITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPANSQ 744
Query: 121 IHPVIHVSQLR 131
+HPV HVSQLR
Sbjct: 745 VHPVFHVSQLR 755
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 111 bits (278), Expect = 3e-23
Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 11/160 (6%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPF+ALYG PPP I + + T+ + I+ +K +L +++R+ A++
Sbjct: 1382 MTPFQALYGYPPPQINEFSVPCNVSEEARVTIEQKDAIIQKLKYSLTEAQRRIKHYADRN 1441
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R + T VG +V+L+LQ YRQ R S KL ++YGPF I+ ++G VAY+L LP S
Sbjct: 1442 RSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSKFYGPFKIMEKVGRVAYKLQLPEGSN 1501
Query: 121 IHPVIHVSQLREYHGQ-----------DPDGHFRPIPPEV 149
IHPV HVSQL+++ G PDG + P V
Sbjct: 1502 IHPVFHVSQLKKHIGSRAVPMANLPSVGPDGQIKTEPVAV 1541
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 110 bits (276), Expect = 5e-23
Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPFE +YG+ PP Y+ G + V + +L E +L +K +L R++ RM A+Q
Sbjct: 1297 MTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFADQH 1356
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R + F +G V+++LQ YRQ +V R + KL+ +Y+GP+ I+ R G VAY+L LP S+
Sbjct: 1357 RTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSYSQ 1416
Query: 121 IHPVIHVSQLREYHGQ-DPDGHFRPIPPEVANNLFNESPE 159
+HPV HVSQL+ G H P V ++F + PE
Sbjct: 1417 VHPVFHVSQLKVLVGNVSTTVHL----PSVMQDVFEKVPE 1452
>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 110 bits (276), Expect = 5e-23
Identities = 68/161 (42%), Positives = 95/161 (58%), Gaps = 7/161 (4%)
Query: 2 TPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQKR 61
TPF+ LYGR PP I + T +L+ L + +L IKE+L ++Q M ++ R
Sbjct: 1179 TPFKVLYGRDPPPIMRFEANSTKNCELEGLLKQRDLMLADIKEHLVNAQQLMKNNDDKHR 1238
Query: 62 KDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSRI 121
++ F V+L+L+ YRQ++V +R KLA +Y+GPF I+ RIG VAY L LP S+I
Sbjct: 1239 REVEFDTRNRVFLKLRPYRQNSVTKRVCQKLAAKYFGPFEIMERIGKVAYRLKLPEGSKI 1298
Query: 122 HPVIHVSQLREYHGQDPDGHFRPIP-PEV--ANNLFNESPE 159
H V HVSQL++ G H + IP PEV A+N F PE
Sbjct: 1299 HLVFHVSQLKQVLGD----HHQVIPLPEVLTADNEFVVVPE 1335
>ref|XP_507143.1| PREDICTED OJ1449_C01.20 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 299
Score = 108 bits (271), Expect = 2e-22
Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPF+ALYG PP I + + +L E I+ +K +++ +++RM A++
Sbjct: 95 MTPFKALYGYTPPQINEFSVPCNVSAEARVSLEEKEAIIQNLKSSMDAAQKRMKHYADRN 154
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R + VG +V+L+LQ YRQ+ + R S KL ++YGPF + ++IG VAY+L LP +
Sbjct: 155 RTERELQVGDMVYLKLQPYRQNALGVRGSLKLRSKFYGPFRVEQKIGQVAYKLQLPEGAN 214
Query: 121 IHPVIHVSQLREYHGQDPDGHFRPIP 146
IHPV HVSQL+++ G+ H P+P
Sbjct: 215 IHPVFHVSQLKKHLGR----HAVPMP 236
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 107 bits (267), Expect = 5e-22
Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 11/160 (6%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPF+ALYG PPP I + + TL IL +K ++ +++R+ A++
Sbjct: 1407 MTPFQALYGYPPPQITEFAIPCNMSEEARVTLEDKALILQKLKSSIGEAQRRIKFYADKG 1466
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R + T +G +V+L+LQ YRQ + R S KL +YYGPF ++ ++G VAY+L LP +
Sbjct: 1467 RSERTLELGDMVYLKLQPYRQVAMGIRGSLKLRSKYYGPFKVIEKMGAVAYKLQLPDGAG 1526
Query: 121 IHPVIHVSQLREYHGQ-----------DPDGHFRPIPPEV 149
IHPV HVSQL+++ G PDG + P V
Sbjct: 1527 IHPVFHVSQLKKHLGARAIPMPNLPAIGPDGQIKTEPAAV 1566
>ref|XP_475616.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1377
Score = 107 bits (266), Expect = 7e-22
Identities = 57/132 (43%), Positives = 83/132 (62%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TPFEA++G P V LD+ + ++ I +L R++QRM + A+ K
Sbjct: 1238 LTPFEAMFGHKPRHFGLSVDSVGVPSALDSWMQDRHNMQSLIYHHLVRAQQRMKSQADSK 1297
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R D F VG V+++LQ Y Q +V R + KLA ++YGPF IL+R+G VAY+L LP +S
Sbjct: 1298 RTDRVFAVGDWVFMKLQPYVQQSVMTRANQKLAFKFYGPFQILQRVGSVAYKLQLPATSL 1357
Query: 121 IHPVIHVSQLRE 132
IHPV+HVSQL++
Sbjct: 1358 IHPVVHVSQLKK 1369
>emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa (japonica cultivar-group)]
gi|50928515|ref|XP_473785.1| OSJNBa0041A02.23 [Oryza
sativa (japonica cultivar-group)]
Length = 1373
Score = 107 bits (266), Expect = 7e-22
Identities = 62/161 (38%), Positives = 94/161 (57%), Gaps = 13/161 (8%)
Query: 1 MTPFEALYG-RPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQ 59
+TP+EALYG PP + + G+ T ++ T E ++ +K+NL R++ R+ A++
Sbjct: 1169 VTPYEALYGVHPPQNGEQAIPGNVTE-EIRITAQQREELMLRLKDNLLRAQNRIRKFADR 1227
Query: 60 KRKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSS 119
R + +F G +V+L++Q YRQ+ R S KL ++YGPF IL+RIG VAY L LP +
Sbjct: 1228 LRSERSFQEGDMVYLKMQPYRQNAFGLRGSLKLRAKFYGPFRILKRIGKVAYHLQLPEEA 1287
Query: 120 RIHPVIHVSQLREYHGQ-----------DPDGHFRPIPPEV 149
IHPV HVSQL+++ G D DG+ + P V
Sbjct: 1288 GIHPVFHVSQLKKHVGNLVVPLPNLPLVDEDGNIKTEPVAV 1328
>gb|AAS55774.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2108
Score = 107 bits (266), Expect = 7e-22
Identities = 57/132 (43%), Positives = 83/132 (62%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TPFEA++G P V LD+ + ++ I +L R++QRM + A+ K
Sbjct: 1969 LTPFEAMFGHKPRHFGLSVDSVGVPSALDSWMQDRHNMQSLIYHHLVRAQQRMKSQADSK 2028
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R D F VG V+++LQ Y Q +V R + KLA ++YGPF IL+R+G VAY+L LP +S
Sbjct: 2029 RTDRVFAVGDWVFMKLQPYVQQSVMTRANQKLAFKFYGPFQILQRVGSVAYKLQLPATSL 2088
Query: 121 IHPVIHVSQLRE 132
IHPV+HVSQL++
Sbjct: 2089 IHPVVHVSQLKK 2100
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 106 bits (264), Expect = 1e-21
Identities = 58/157 (36%), Positives = 89/157 (55%), Gaps = 11/157 (7%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPF+A+YG PP I + + T+ E IL+ +K +L ++ RM A++
Sbjct: 1271 MTPFKAMYGYSPPQINEFSVPCNISEEARVTIEEKEAILNKLKNSLADAQHRMKYFADKN 1330
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R + VG +V+L+L+ YRQ R S KL ++YGPF +L++IG +AY+L LP ++
Sbjct: 1331 RTERNLEVGDMVYLKLKPYRQSAFGIRGSLKLRSKFYGPFKVLQKIGQLAYKLQLPDDAQ 1390
Query: 121 IHPVIHVSQLREYHGQ-----------DPDGHFRPIP 146
IHPV HVSQL+++ G+ PDG + P
Sbjct: 1391 IHPVFHVSQLKKHLGKHAIPMSNLPSVGPDGQIKTEP 1427
>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1495
Score = 105 bits (262), Expect = 2e-21
Identities = 54/146 (36%), Positives = 83/146 (55%), Gaps = 1/146 (0%)
Query: 2 TPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQKR 61
TPF +YGR PPS+R+Y G T + + ++ + L I++ LE+++Q ++K
Sbjct: 1264 TPFHVVYGRSPPSLRSYEPGSTCLPAVQRSMQDRDQFLVAIRDRLEQAQQVYKQAYDKKH 1323
Query: 62 KDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSRI 121
++ F VG VWLRL ++ R KL ++YGP+ I+ IG VAY L LPP +R+
Sbjct: 1324 RELNFDVGDWVWLRLLHRPMASLDTRGRGKLGPKFYGPYQIVACIGSVAYRLRLPPGARL 1383
Query: 122 HPVIHVSQLREYHGQDPDGHFRPIPP 147
H V HV L+ + G +P P+PP
Sbjct: 1384 HDVFHVGLLKPFRG-EPPSTLPPLPP 1408
>emb|CAE05537.2| OSJNBa0053B21.11 [Oryza sativa (japonica cultivar-group)]
gi|50923861|ref|XP_472291.1| OSJNBa0053B21.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1251
Score = 105 bits (261), Expect = 3e-21
Identities = 53/136 (38%), Positives = 83/136 (60%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TP+EA+YG PP I + T+ E +L +KENL +++ R+ A++
Sbjct: 1081 VTPYEAMYGVTPPQIGERAIPGNVSEEARVTVQQREDMLARLKENLAKAQTRIKKFADRL 1140
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R + F +G +V+L++Q YR + R S KL ++YGPF +L +IG VAY+L LP +
Sbjct: 1141 RSERQFELGDMVYLKMQPYRHNAFGLRGSLKLRAKFYGPFRVLEKIGKVAYKLQLPEEAN 1200
Query: 121 IHPVIHVSQLREYHGQ 136
IHPV HVSQL+++ G+
Sbjct: 1201 IHPVFHVSQLKKHVGR 1216
>gb|AAL68644.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 933
Score = 104 bits (260), Expect = 3e-21
Identities = 57/131 (43%), Positives = 84/131 (63%), Gaps = 3/131 (2%)
Query: 2 TPFEALYGRPPPSIRNYVRGHTTVLK-LDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
TPFE LYG PP +R V+ LD+ L+ + ++++L R++Q M T A++K
Sbjct: 677 TPFEVLYGYPPSHFG--IRADACVISDLDSWLSERHLMTQLLRQHLNRAQQVMKTQADKK 734
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R +F VG V+L+LQ Y Q +V +R + KL+ RY+GP+ IL ++G VAY+L LP S
Sbjct: 735 RSFRSFQVGDWVFLKLQPYVQSSVAKRANHKLSFRYFGPYQILSKVGSVAYKLQLPADSM 794
Query: 121 IHPVIHVSQLR 131
+HPV HVSQL+
Sbjct: 795 VHPVFHVSQLK 805
>ref|XP_476235.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|50300521|gb|AAT73663.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|46485871|gb|AAS98496.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 915
Score = 104 bits (259), Expect = 4e-21
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
M L+G P I + R TT ++ TL E IL +KENLE +++RM A++
Sbjct: 748 MDNIHKLHGMPTAIITDRDRIFTTEARV--TLEEKEVILQNLKENLELAQKRMKHFADKN 805
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R TF +G +V+L+LQ YRQ R S KL +YYGPF I +++G VAY+L LP ++
Sbjct: 806 RTKRTFEIGDMVYLKLQPYRQTAFGIRGSLKLRSKYYGPFKITQKVGKVAYKLQLPDEAQ 865
Query: 121 IHPVIHVSQLREYHG 135
IHPV HVSQL+ + G
Sbjct: 866 IHPVFHVSQLKRHLG 880
>gb|AAP68389.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50917833|ref|XP_469313.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1246
Score = 103 bits (257), Expect = 7e-21
Identities = 53/136 (38%), Positives = 83/136 (60%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+T +EA+YG PP I + T+ E +L +KENL +++ R+ L ++
Sbjct: 1042 VTSYEAMYGVTPPHIGERAIPGNVSEEARATVQQREDMLARLKENLAKAQTRIKKLVDRL 1101
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R + F +G +V+L++Q YRQ+ R S KL ++YGPF +L +IG VAY+L LP +
Sbjct: 1102 RSERQFELGDMVYLKMQPYRQNAFGLRGSLKLRAKFYGPFRVLEKIGKVAYKLQLPEEAN 1161
Query: 121 IHPVIHVSQLREYHGQ 136
IHPV HVSQL+++ G+
Sbjct: 1162 IHPVFHVSQLKKHVGR 1177
>gb|AAN59765.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|50920455|ref|XP_470588.1| Putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 415
Score = 103 bits (257), Expect = 7e-21
Identities = 59/131 (45%), Positives = 81/131 (61%)
Query: 2 TPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQKR 61
TPFE LYG P V L+L L E + I+++L R++ RM A++ R
Sbjct: 167 TPFEVLYGHKPRYFGLSVNALCESLELSDWLQEREQMQSLIRDHLLRAQARMKFQADKHR 226
Query: 62 KDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSRI 121
+ +F VG V+L+LQ + Q +V R + KLA R+YGPF IL R+G VAY+L LP +S I
Sbjct: 227 FERSFAVGDWVYLKLQPFVQQSVVTRANRKLAFRFYGPFQILARVGEVAYKLALPATSLI 286
Query: 122 HPVIHVSQLRE 132
HPVIHVSQL++
Sbjct: 287 HPVIHVSQLKK 297
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,718,004
Number of Sequences: 2540612
Number of extensions: 28949222
Number of successful extensions: 83821
Number of sequences better than 10.0: 1110
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 500
Number of HSP's that attempted gapping in prelim test: 81425
Number of HSP's gapped (non-prelim): 1687
length of query: 339
length of database: 863,360,394
effective HSP length: 128
effective length of query: 211
effective length of database: 538,162,058
effective search space: 113552194238
effective search space used: 113552194238
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.5 bits)
Medicago: description of AC136141.8