BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136140.1 - phase: 0
(115 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278... 98 4e-20
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 81 7e-15
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 81 7e-15
gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana] 81 7e-15
gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis tha... 78 4e-14
gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 78 4e-14
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] gi... 78 4e-14
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 78 4e-14
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana] 78 4e-14
gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana] 78 4e-14
gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis tha... 75 4e-13
ref|XP_469280.1| gag-pol polyprotein [Oryza sativa (japonica cul... 75 5e-13
gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum] 74 8e-13
ref|XP_470746.1| putative gag-pol polyprotein [Oryza sativa] gi|... 74 1e-12
gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cult... 72 3e-12
gb|AAP51797.1| putative copia-type polyprotein [Oryza sativa (ja... 72 4e-12
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi... 71 5e-12
gb|AAF79483.1| F1L3.20 [Arabidopsis thaliana] gi|25301675|pir||D... 71 5e-12
gb|AAF97299.1| Similar to copia-type reverse transcriptase prote... 71 5e-12
gb|AAV31383.1| putative polyprotein [Oryza sativa (japonica cult... 70 9e-12
>emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278365|pir||T47841
hypothetical protein T2O9.150 - Arabidopsis thaliana
Length = 1339
Score = 98.2 bits (243), Expect = 4e-20
Identities = 48/79 (60%), Positives = 59/79 (73%), Gaps = 1/79 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V+ TP EAWS +KP V FR+FG I Y HIP +R K LDD S KCV LGVSE+SKA+R
Sbjct: 643 VEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQKRSK-LDDKSKKCVFLGVSEESKAWR 701
Query: 72 FFDRIIKKIVVSEDVAFDE 90
+D ++KKIV+S+DV FDE
Sbjct: 702 LYDPVMKKIVISKDVVFDE 720
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana] gi|25301683|pir||E86451 probable copia-type
polyprotein, 28768-32772 [imported] - Arabidopsis
thaliana
Length = 1334
Score = 80.9 bits (198), Expect = 7e-15
Identities = 41/76 (53%), Positives = 53/76 (68%), Gaps = 1/76 (1%)
Query: 16 TPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRFFDR 75
TP E WS KP V RIFG +AYA +P+ +R K LD+ S KCV+ GVS++SKAYR +D
Sbjct: 648 TPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIK-LDEKSIKCVMFGVSKESKAYRLYDP 706
Query: 76 IIKKIVVSEDVAFDEQ 91
KI++S DV FDE+
Sbjct: 707 ATGKILISRDVQFDEE 722
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 80.9 bits (198), Expect = 7e-15
Identities = 41/76 (53%), Positives = 53/76 (68%), Gaps = 1/76 (1%)
Query: 16 TPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRFFDR 75
TP E WS KP V RIFG +AYA +P+ +R K LD+ S KCV+ GVS++SKAYR +D
Sbjct: 648 TPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIK-LDEKSIKCVMFGVSKESKAYRLYDP 706
Query: 76 IIKKIVVSEDVAFDEQ 91
KI++S DV FDE+
Sbjct: 707 ATGKILISRDVQFDEE 722
>gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 80.9 bits (198), Expect = 7e-15
Identities = 41/76 (53%), Positives = 53/76 (68%), Gaps = 1/76 (1%)
Query: 16 TPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRFFDR 75
TP E WS KP V RIFG +AYA +P+ +R K LD+ S KCV+ GVS++SKAYR +D
Sbjct: 553 TPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIK-LDEKSIKCVMFGVSKESKAYRLYDP 611
Query: 76 IIKKIVVSEDVAFDEQ 91
KI++S DV FDE+
Sbjct: 612 ATGKILISRDVQFDEE 627
>gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321254|gb|AAG50698.1| copia-type polyprotein,
putative [Arabidopsis thaliana] gi|25301687|pir||F96614
probable copia-type polyprotein T18I24.5 [imported] -
Arabidopsis thaliana
Length = 1320
Score = 78.2 bits (191), Expect = 4e-14
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V TP EAWS +KP V R+FG IA+AH+P +R K LDD S K + +G SK Y+
Sbjct: 675 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSK-LDDKSEKYIFIGYDNNSKGYK 733
Query: 72 FFDRIIKKIVVSEDVAFDEQG 92
++ KK ++S ++ FDE+G
Sbjct: 734 LYNPDTKKTIISRNIVFDEEG 754
>gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25301681|pir||F86246
hypothetical protein [imported] - Arabidopsis thaliana
Length = 1352
Score = 78.2 bits (191), Expect = 4e-14
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V TP EAWS +KP V R+FG IA+AH+P +R K LDD S K + +G SK Y+
Sbjct: 675 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSK-LDDKSEKYIFIGYDNNSKGYK 733
Query: 72 FFDRIIKKIVVSEDVAFDEQG 92
++ KK ++S ++ FDE+G
Sbjct: 734 LYNPDTKKTIISRNIVFDEEG 754
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
gi|11278364|pir||T47925 copia-type polyprotein -
Arabidopsis thaliana
Length = 1352
Score = 78.2 bits (191), Expect = 4e-14
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V TP EAWS +KP V R+FG IA+AH+P +R K LDD S K + +G SK Y+
Sbjct: 675 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSK-LDDKSEKYIFIGYDNNSKGYK 733
Query: 72 FFDRIIKKIVVSEDVAFDEQG 92
++ KK ++S ++ FDE+G
Sbjct: 734 LYNPDTKKTIISRNIVFDEEG 754
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
thaliana] gi|11278363|pir||T49313 copia-type reverse
transcriptase-like protein - Arabidopsis thaliana
Length = 1272
Score = 78.2 bits (191), Expect = 4e-14
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V TP EAWS +KP V R+FG IA+AH+P +R K LDD S K + +G SK Y+
Sbjct: 675 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNK-LDDKSEKYIFIGYDNNSKGYK 733
Query: 72 FFDRIIKKIVVSEDVAFDEQG 92
++ KK ++S ++ FDE+G
Sbjct: 734 LYNPDTKKTIISRNIVFDEEG 754
>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
Length = 623
Score = 78.2 bits (191), Expect = 4e-14
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V TP EAWS +KP V R+FG IA+AH+P +R K LDD S K + +G SK Y+
Sbjct: 172 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNK-LDDKSEKYIFIGYDNNSKGYK 230
Query: 72 FFDRIIKKIVVSEDVAFDEQG 92
++ KK ++S ++ FDE+G
Sbjct: 231 LYNPDTKKTIISRNIVFDEEG 251
>gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 78.2 bits (191), Expect = 4e-14
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V TP EAWS +KP V R+FG IA+AH+P +R K LDD S K + +G SK Y+
Sbjct: 614 VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSK-LDDKSEKYIFIGYDNNSKGYK 672
Query: 72 FFDRIIKKIVVSEDVAFDEQG 92
++ KK ++S ++ FDE+G
Sbjct: 673 LYNPDTKKTIISRNIVFDEEG 693
>gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 75.1 bits (183), Expect = 4e-13
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V TP EAWS +K V R+FG IA+AH+P +R K LDD S K + +G SK Y+
Sbjct: 675 VSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSK-LDDKSEKYIFIGYDNNSKGYK 733
Query: 72 FFDRIIKKIVVSEDVAFDEQG 92
++ KK ++S ++ FDE+G
Sbjct: 734 LYNPDTKKTIISRNIVFDEEG 754
>ref|XP_469280.1| gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|29150404|gb|AAO72413.1| gag-pol polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1339
Score = 74.7 bits (182), Expect = 5e-13
Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 16 TPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRFFDR 75
TP+EAW+ KKP++ R+FG A+A + KK LDD SN V LGV E SKA+R FD
Sbjct: 659 TPFEAWTGKKPHLGHLRVFGCTAHAKVTAPHLKK-LDDRSNPVVYLGVEEGSKAHRLFDP 717
Query: 76 IIKKIVVSEDVAFDE 90
++I+VS DV FDE
Sbjct: 718 RRRQIIVSRDVVFDE 732
>gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1333
Score = 73.9 bits (180), Expect = 8e-13
Identities = 37/79 (46%), Positives = 53/79 (66%), Gaps = 3/79 (3%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V ++TP EAW+ KKP V RIFG IAYA + F + LD+ S KC+ +G S +SKAYR
Sbjct: 651 VWNTTPLEAWNGKKPRVSHLRIFGCIAYALVNFHSK---LDEKSTKCIFVGYSLQSKAYR 707
Query: 72 FFDRIIKKIVVSEDVAFDE 90
++ I K+++S +V F+E
Sbjct: 708 LYNPISGKVIISRNVVFNE 726
>ref|XP_470746.1| putative gag-pol polyprotein [Oryza sativa]
gi|18071369|gb|AAL58228.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1167
Score = 73.6 bits (179), Expect = 1e-12
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V + TP+EAW KKP + R+FG I YA +P +R K D+ S++C+ +G ++ K YR
Sbjct: 539 VPNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVK-FDNKSDRCIFVGYADGIKGYR 597
Query: 72 FFDRIIKKIVVSEDVAFDE 90
++ KKI++S DV FDE
Sbjct: 598 LYNLEKKKIIISRDVIFDE 616
>gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50919599|ref|XP_470160.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1335
Score = 72.0 bits (175), Expect = 3e-12
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V + TP+EAW KKP + R+FG I YA +P +Q++ D+ S++C+ +G ++ K YR
Sbjct: 665 VTNRTPFEAWYGKKPVIGHMRVFGCICYAQVP-AQKRVKFDNKSDRCIFVGYADGIKGYR 723
Query: 72 FFDRIIKKIVVSEDVAFDE 90
++ KKI++S D FDE
Sbjct: 724 LYNLEKKKIIISRDAIFDE 742
>gb|AAP51797.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530416|ref|NP_919510.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18542917|gb|AAL75752.1| Putative
copia-type polyprotein [Oryza sativa]
Length = 1350
Score = 71.6 bits (174), Expect = 4e-12
Identities = 33/79 (41%), Positives = 51/79 (63%), Gaps = 1/79 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
V + TP+EAW KKP + R+FG I YA +P +Q++ D+ S+ C+ +G ++ K YR
Sbjct: 588 VPNRTPFEAWYGKKPVIGHMRVFGCICYAQVP-AQKRVKFDNKSDWCIFVGYADGIKGYR 646
Query: 72 FFDRIIKKIVVSEDVAFDE 90
++ KKI++S DV FDE
Sbjct: 647 LYNLEKKKIIISRDVIFDE 665
>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411795|pir||G84552 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 822
Score = 71.2 bits (173), Expect = 5e-12
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
+K+ TP EAWS KP V ++FG I Y HIP +R+K DD S + + +G S ++K YR
Sbjct: 367 LKNKTPLEAWSDSKPSVSHMKVFGSICYVHIPDEKRRK-WDDKSKRAIFVGYSSQTKGYR 425
Query: 72 FFDRIIKKIVVSEDVAFDEQGMLSLILKEI 101
+ KI +S DV FDE KE+
Sbjct: 426 VYLLKENKIDISRDVIFDEDSKWDWEKKEV 455
>gb|AAF79483.1| F1L3.20 [Arabidopsis thaliana] gi|25301675|pir||D86311 protein
F1L3.20 [imported] - Arabidopsis thaliana
Length = 1188
Score = 71.2 bits (173), Expect = 5e-12
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
+K TPYE + ++P V RIFG IAYA I Q +K LDD S + LG SKAYR
Sbjct: 586 LKDKTPYECFRDRRPTVEHIRIFGCIAYAKIDKQQLRK-LDDRSRILIHLGTEPGSKAYR 644
Query: 72 FFDRIIKKIVVSEDVAFDE 90
FD +K+VVS DV FDE
Sbjct: 645 LFDPQTQKVVVSRDVVFDE 663
>gb|AAF97299.1| Similar to copia-type reverse transcriptase proteins [Arabidopsis
thaliana]
Length = 833
Score = 71.2 bits (173), Expect = 5e-12
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYR 71
+K TPYE + ++P V RIFG IAYA I Q +K LDD S + LG SKAYR
Sbjct: 204 LKDKTPYECFRDRRPTVEHIRIFGCIAYAKIDKQQLRK-LDDRSRILIHLGTEPGSKAYR 262
Query: 72 FFDRIIKKIVVSEDVAFDE 90
FD +K+VVS DV FDE
Sbjct: 263 LFDPQTQKVVVSRDVVFDE 281
>gb|AAV31383.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1028
Score = 70.5 bits (171), Expect = 9e-12
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 16 TPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRFFDR 75
TP+EAW+ KKP++ R+FG A+A + KK LDD S + V LG+ E SKA+R FD
Sbjct: 513 TPFEAWTGKKPHLGHLRVFGCTAHAKVTTPNLKK-LDDRSEQFVYLGIEEGSKAHRLFDP 571
Query: 76 IIKKIVVSEDVAFDE 90
++I VS DV FDE
Sbjct: 572 RRRRIHVSRDVVFDE 586
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.142 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,501,976
Number of Sequences: 2540612
Number of extensions: 6354182
Number of successful extensions: 16569
Number of sequences better than 10.0: 475
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 15917
Number of HSP's gapped (non-prelim): 492
length of query: 115
length of database: 863,360,394
effective HSP length: 91
effective length of query: 24
effective length of database: 632,164,702
effective search space: 15171952848
effective search space used: 15171952848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC136140.1