BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135801.4 + phase: 0
(61 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD27986.1| putative small nuclear ribonucleoprotein polypep... 112 2e-24
emb|CAB81015.1| snRNP Sm protein F-like [Arabidopsis thaliana] g... 110 1e-23
dbj|BAD95080.1| hypothetical protein [Arabidopsis thaliana] 110 1e-23
emb|CAG33032.1| SNRPF [Homo sapiens] 96 3e-19
ref|XP_357414.1| PREDICTED: similar to Snrpf protein [Mus musculus] 95 4e-19
gb|AAH56127.1| Snrpf-prov protein [Xenopus laevis] gi|49900002|g... 95 4e-19
gb|AAH02505.2| SNRPF protein [Homo sapiens] 95 4e-19
ref|XP_345815.2| PREDICTED: similar to Small nuclear ribonucleop... 95 4e-19
ref|XP_539726.1| PREDICTED: similar to Small nuclear ribonucleop... 95 4e-19
gb|AAH63397.1| SNRPF protein [Homo sapiens] 95 4e-19
gb|AAH66015.1| Snrpf protein [Mus musculus] 95 4e-19
ref|XP_509281.1| PREDICTED: similar to SNRPF protein [Pan troglo... 95 4e-19
ref|XP_416157.1| PREDICTED: similar to Small nuclear ribonucleop... 95 4e-19
gb|AAT68156.1| small nuclear ribonucleoprotein F [Danio rerio] g... 94 7e-19
emb|CAG04169.1| unnamed protein product [Tetraodon nigroviridis] 93 2e-18
gb|AAA28445.1| membrane-associated protein 91 6e-18
gb|AAM50722.1| GM23968p [Drosophila melanogaster] gi|22024001|re... 91 6e-18
gb|AAS15770.1| DebB [Drosophila simulans] 91 8e-18
ref|XP_312266.1| ENSANGP00000002801 [Anopheles gambiae str. PEST... 89 4e-17
ref|XP_548086.1| PREDICTED: similar to Small nuclear ribonucleop... 88 5e-17
>dbj|BAD27986.1| putative small nuclear ribonucleoprotein polypeptide F [Oryza
sativa (japonica cultivar-group)]
Length = 86
Score = 112 bits (281), Expect = 2e-24
Identities = 53/58 (91%), Positives = 56/58 (96%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDA 58
MEYKGYLVSVDSYMNLQLANTEEYI+G F+GNLGEILIRCNNVLY+RGVPED EIEDA
Sbjct: 28 MEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDTEIEDA 85
>emb|CAB81015.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|5730132|emb|CAB52466.1| snRNP Sm protein F-like
[Arabidopsis thaliana] gi|30102544|gb|AAP21190.1|
At4g30220 [Arabidopsis thaliana]
gi|21593208|gb|AAM65157.1| snRNP Sm protein F-like
[Arabidopsis thaliana] gi|15234669|ref|NP_194751.1|
small nuclear ribonucleoprotein F, putative / snRNP-F,
putative / Sm protein F, putative [Arabidopsis
thaliana] gi|7486764|pir||T14082 hypothetical protein
F9N11.70 - Arabidopsis thaliana
gi|10720264|sp|Q9SUM2|RUXF_ARATH Probable small nuclear
ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
(SmF)
Length = 88
Score = 110 bits (274), Expect = 1e-23
Identities = 51/61 (83%), Positives = 55/61 (89%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
MEYKG+L SVDSYMNLQL NTEEYI+G TGNLGEILIRCNNVLY+RGVPEDEE+EDA
Sbjct: 28 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 87
Query: 61 D 61
D
Sbjct: 88 D 88
>dbj|BAD95080.1| hypothetical protein [Arabidopsis thaliana]
Length = 61
Score = 110 bits (274), Expect = 1e-23
Identities = 51/61 (83%), Positives = 55/61 (89%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
MEYKG+L SVDSYMNLQL NTEEYI+G TGNLGEILIRCNNVLY+RGVPEDEE+EDA
Sbjct: 1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 60
Query: 61 D 61
D
Sbjct: 61 D 61
>emb|CAG33032.1| SNRPF [Homo sapiens]
Length = 86
Score = 95.5 bits (236), Expect = 3e-19
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE + D
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEEDGEMRD 86
>ref|XP_357414.1| PREDICTED: similar to Snrpf protein [Mus musculus]
Length = 143
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 84 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 137
>gb|AAH56127.1| Snrpf-prov protein [Xenopus laevis] gi|49900002|gb|AAH77006.1|
MGC89662 protein [Xenopus tropicalis]
gi|61237394|sp|P62307|RUXF_MOUSE Small nuclear
ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
(SmF) gi|61237391|sp|P62306|RUXF_HUMAN Small nuclear
ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
(SmF) gi|54039569|sp|P62321|RUXF_XENLA Small nuclear
ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
(SmF) gi|806564|emb|CAA59688.1| Sm protein F [Homo
sapiens] gi|52346080|ref|NP_001005083.1| MGC89662
protein [Xenopus tropicalis]
gi|12842305|dbj|BAB25551.1| unnamed protein product
[Mus musculus] gi|4507131|ref|NP_003086.1| small
nuclear ribonucleoprotein polypeptide F [Homo sapiens]
Length = 86
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80
>gb|AAH02505.2| SNRPF protein [Homo sapiens]
Length = 131
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 72 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 125
>ref|XP_345815.2| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF) [Rattus norvegicus]
Length = 275
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 216 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 269
>ref|XP_539726.1| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF) [Canis familiaris]
Length = 344
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 285 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 338
>gb|AAH63397.1| SNRPF protein [Homo sapiens]
Length = 117
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 58 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 111
>gb|AAH66015.1| Snrpf protein [Mus musculus]
Length = 112
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 53 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 106
>ref|XP_509281.1| PREDICTED: similar to SNRPF protein [Pan troglodytes]
Length = 405
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 346 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 399
>ref|XP_416157.1| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF) [Gallus gallus]
Length = 290
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 231 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 284
>gb|AAT68156.1| small nuclear ribonucleoprotein F [Danio rerio]
gi|51468014|ref|NP_001003881.1| small nuclear
ribonucleoprotein polypeptide F-like [Danio rerio]
Length = 86
Score = 94.4 bits (233), Expect = 7e-19
Identities = 42/54 (77%), Positives = 49/54 (89%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEY++G G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEVLIRCNNVLYIRGVEEEEE 80
>emb|CAG04169.1| unnamed protein product [Tetraodon nigroviridis]
Length = 87
Score = 92.8 bits (229), Expect = 2e-18
Identities = 41/54 (75%), Positives = 49/54 (89%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEE+++G G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 28 MEYKGYLVSVDGYMNMQLANTEEFVDGALAGHLGEVLIRCNNVLYIRGVEEEEE 81
>gb|AAA28445.1| membrane-associated protein
Length = 101
Score = 91.3 bits (225), Expect = 6e-18
Identities = 41/58 (70%), Positives = 51/58 (87%)
Query: 2 EYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAA 59
EYKG+LVSVD YMN+QLANTEE IEG+ TGNLGE+LIRCNNVLY++G+ +D+E + A
Sbjct: 30 EYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDEEGECA 87
>gb|AAM50722.1| GM23968p [Drosophila melanogaster] gi|22024001|ref|NP_523708.2|
CG16792-PA [Drosophila melanogaster]
gi|21645477|gb|AAF58559.2| CG16792-PA [Drosophila
melanogaster] gi|54635536|gb|EAL24939.1| GA14154-PA
[Drosophila pseudoobscura]
gi|29337191|sp|Q24297|RUXF_DROME Small nuclear
ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
(SmF) (Membrane-associated protein Deb-B)
Length = 88
Score = 91.3 bits (225), Expect = 6e-18
Identities = 41/59 (69%), Positives = 51/59 (85%)
Query: 2 EYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
EYKG+LVSVD YMN+QLANTEE IEG+ TGNLGE+LIRCNNVLY++G+ +D+E + D
Sbjct: 30 EYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDEEGEMRD 88
>gb|AAS15770.1| DebB [Drosophila simulans]
Length = 79
Score = 90.9 bits (224), Expect = 8e-18
Identities = 40/53 (75%), Positives = 49/53 (91%)
Query: 2 EYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
EYKG+LVSVD YMN+QLANTEE IEG+ TGNLGE+LIRCNNVLY++G+ +D+E
Sbjct: 26 EYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDE 78
>ref|XP_312266.1| ENSANGP00000002801 [Anopheles gambiae str. PEST]
gi|30177439|gb|EAA07677.2| ENSANGP00000002801
[Anopheles gambiae str. PEST]
Length = 88
Score = 88.6 bits (218), Expect = 4e-17
Identities = 38/59 (64%), Positives = 51/59 (86%)
Query: 2 EYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
EYKG+LVSVD YMN+QLANTEE+++G TG+LGE+LIRCNNVLY+RG+ +++E + D
Sbjct: 30 EYKGFLVSVDGYMNMQLANTEEFVDGQNTGHLGEVLIRCNNVLYIRGIDDEDEEGEMRD 88
>ref|XP_548086.1| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF) [Canis familiaris]
Length = 99
Score = 88.2 bits (217), Expect = 5e-17
Identities = 39/55 (70%), Positives = 50/55 (90%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEI 55
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRC+NVLY+RGV + +++
Sbjct: 43 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCHNVLYIRGVKKSKKM 97
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.137 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,727,346
Number of Sequences: 2540612
Number of extensions: 3443870
Number of successful extensions: 5113
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 4995
Number of HSP's gapped (non-prelim): 149
length of query: 61
length of database: 863,360,394
effective HSP length: 37
effective length of query: 24
effective length of database: 769,357,750
effective search space: 18464586000
effective search space used: 18464586000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC135801.4