BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135799.5 + phase: 0
(171 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_850486.1| expressed protein [Arabidopsis thaliana] 75 7e-13
emb|CAB86481.1| putative protein [Arabidopsis thaliana] gi|15229... 64 2e-09
dbj|BAB02796.1| replication protein A1-like [Arabidopsis thaliana] 62 6e-09
ref|NP_187935.1| hypothetical protein [Arabidopsis thaliana] 62 6e-09
gb|AAP52633.1| putative replication protein [Oryza sativa (japon... 62 8e-09
gb|AAX95750.1| Eukaryotic protein of unknown function (DUF889), ... 62 8e-09
dbj|BAA95747.1| replication protein-like [Arabidopsis thaliana] 61 1e-08
gb|AAD22306.1| putative replication protein A1 [Arabidopsis thal... 60 3e-08
ref|NP_178584.2| hypothetical protein [Arabidopsis thaliana] 60 3e-08
dbj|BAD87333.1| DNA binding protein-like [Oryza sativa (japonica... 59 5e-08
dbj|BAB11360.1| replication protein A1-like protein [Arabidopsis... 58 1e-07
gb|AAM15355.1| putative replication protein A1 [Arabidopsis thal... 58 1e-07
ref|XP_470551.1| Putative helicase [Oryza sativa (japonica culti... 57 2e-07
ref|NP_198524.1| hypothetical protein [Arabidopsis thaliana] 57 3e-07
gb|AAC95166.1| putative replication protein A1 [Arabidopsis thal... 56 5e-07
ref|NP_175703.1| replication protein-related [Arabidopsis thalia... 55 6e-07
gb|AAD32756.1| putative replication protein A1 [Arabidopsis thal... 55 6e-07
ref|NP_175123.1| hypothetical protein [Arabidopsis thaliana] 55 6e-07
gb|AAP52594.1| putative DNA binding protein [Oryza sativa (japon... 53 3e-06
dbj|BAD81453.1| unknown protein [Oryza sativa (japonica cultivar... 53 3e-06
>ref|NP_850486.1| expressed protein [Arabidopsis thaliana]
Length = 394
Score = 75.1 bits (183), Expect = 7e-13
Identities = 35/102 (34%), Positives = 60/102 (58%)
Query: 1 MSAKYTPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRK 60
M + TP+S + K+ VR+A +W +K P I+ +++LLVD+KG RI A+ R
Sbjct: 1 MPLEITPVSQLHSHLSTCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRS 60
Query: 61 DLVAKFRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMM 102
L++KF+ ++EG Y + N + N Y+ +SH +K++ M
Sbjct: 61 QLLSKFQEKLEEGDCYMIMNFEISDNGGSYRASSHPYKINFM 102
>emb|CAB86481.1| putative protein [Arabidopsis thaliana]
gi|15229218|ref|NP_189896.1| hypothetical protein
[Arabidopsis thaliana] gi|11357850|pir||T47368
hypothetical protein F7M19.110 - Arabidopsis thaliana
Length = 269
Score = 63.5 bits (153), Expect = 2e-09
Identities = 39/166 (23%), Positives = 83/166 (49%), Gaps = 5/166 (3%)
Query: 5 YTPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVA 64
+TP+ ++ + ++ V++ H+W K SI M+LVDE G +++A R++ +
Sbjct: 9 FTPLKSLKPYKNAWRIQVKLLHVWRQYSVKAGESI---EMILVDEAGDKMYAAVRREQIK 65
Query: 65 KFRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAIPMNVFEFKP 124
KF + EG + ++ Y+++ K+K+ + +T + + +
Sbjct: 66 KFERCLTEGVWKIITTITLNPTSGKYRISDLKYKIGFVFKTTVSPCDSVSDAL-FLSLAK 124
Query: 125 FNEILS-STVEEVSTDVIGHVIERGDIRETEKDRRKSRVIDLTLED 169
F+ ILS S + DV+G V++R +I++ + + ++ ID L+D
Sbjct: 125 FDVILSGSANSNILHDVMGQVVDRSEIQDLNANNKPTKKIDFHLKD 170
>dbj|BAB02796.1| replication protein A1-like [Arabidopsis thaliana]
Length = 581
Score = 62.0 bits (149), Expect = 6e-09
Identities = 42/171 (24%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
Query: 1 MSAKYTPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRK 60
M+A + ++ V + + ++ V+ H W R+ T + ++ DE G +IH + RK
Sbjct: 1 MAATFGYLTDVRPYKTSWRVQVKTLHAW--RQYTANTGET-LEVVFSDETGKKIHCSVRK 57
Query: 61 DLVAKFRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAI-PMNV 119
DLV+K+ +M+ G +E +++ ++ TSH +K+S ++ ++ + P++ N
Sbjct: 58 DLVSKYANMLTVGEWVFIETFSLNYAGGSFRPTSHLYKMSFVNGTSV--IPSPSVSDSNY 115
Query: 120 FEFKPFNEILSSTVE-EVSTDVIGHVIERGDIRETEKDRRKSRVIDLTLED 169
F +I S + + DVIG ++ G++ E E + + + ID + D
Sbjct: 116 LTLATFEKIQSGELNPTMLVDVIGQIVMIGELEELEANNKPTTKIDFDIRD 166
>ref|NP_187935.1| hypothetical protein [Arabidopsis thaliana]
Length = 570
Score = 62.0 bits (149), Expect = 6e-09
Identities = 42/171 (24%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
Query: 1 MSAKYTPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRK 60
M+A + ++ V + + ++ V+ H W R+ T + ++ DE G +IH + RK
Sbjct: 1 MAATFGYLTDVRPYKTSWRVQVKTLHAW--RQYTANTGET-LEVVFSDETGKKIHCSVRK 57
Query: 61 DLVAKFRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAI-PMNV 119
DLV+K+ +M+ G +E +++ ++ TSH +K+S ++ ++ + P++ N
Sbjct: 58 DLVSKYANMLTVGEWVFIETFSLNYAGGSFRPTSHLYKMSFVNGTSV--IPSPSVSDSNY 115
Query: 120 FEFKPFNEILSSTVE-EVSTDVIGHVIERGDIRETEKDRRKSRVIDLTLED 169
F +I S + + DVIG ++ G++ E E + + + ID + D
Sbjct: 116 LTLATFEKIQSGELNPTMLVDVIGQIVMIGELEELEANNKPTTKIDFDIRD 166
>gb|AAP52633.1| putative replication protein [Oryza sativa (japonica
cultivar-group)] gi|37532088|ref|NP_920346.1| putative
replication protein [Oryza sativa (japonica
cultivar-group)]
Length = 276
Score = 61.6 bits (148), Expect = 8e-09
Identities = 46/148 (31%), Positives = 74/148 (49%), Gaps = 11/148 (7%)
Query: 6 TPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVAK 65
T I + G N ++ RV+ +W + K T I ++++LVDEKGG IHA L+
Sbjct: 4 TSIDKLFEGDDNSRLLARVSRLWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLIQV 63
Query: 66 FRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKV-HLPAIPMN----VF 120
F+ ++ EG Y L++ V + Y+ ++ MM + +T V +P N V+
Sbjct: 64 FKPLLAEGKVYYLDSYRVKTSNKSYRPVANP---LMMTFTKWTSVEQCLDVPFNFPTVVY 120
Query: 121 EFKPFNEILSSTVE--EVSTDVIGHVIE 146
P NE+ S+ V+ E DVIG + E
Sbjct: 121 SLTPLNEV-SNFVDKNESFVDVIGFITE 147
>gb|AAX95750.1| Eukaryotic protein of unknown function (DUF889), putative [Oryza
sativa (japonica cultivar-group)]
Length = 1806
Score = 61.6 bits (148), Expect = 8e-09
Identities = 46/148 (31%), Positives = 74/148 (49%), Gaps = 11/148 (7%)
Query: 6 TPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVAK 65
T I + G N ++ RV+ +W + K T I ++++LVDEKGG IHA L+
Sbjct: 1318 TSIDKLFEGDDNSRLLARVSRLWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLIQV 1377
Query: 66 FRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKV-HLPAIPMN----VF 120
F+ ++ EG Y L++ V + Y+ ++ MM + +T V +P N V+
Sbjct: 1378 FKPLLAEGKVYYLDSYRVKTSNKSYRPVANP---LMMTFTKWTSVEQCLDVPFNFPTVVY 1434
Query: 121 EFKPFNEILSSTVE--EVSTDVIGHVIE 146
P NE+ S+ V+ E DVIG + E
Sbjct: 1435 SLTPLNEV-SNFVDKNESFVDVIGFITE 1461
>dbj|BAA95747.1| replication protein-like [Arabidopsis thaliana]
Length = 170
Score = 61.2 bits (147), Expect = 1e-08
Identities = 38/166 (22%), Positives = 80/166 (47%), Gaps = 5/166 (3%)
Query: 5 YTPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVA 64
+TP+ ++ + ++ V++ H+W KV SI M+LV+E G +++A R++ +
Sbjct: 9 FTPLKSLKPYKNAWRIQVKLLHVWRQYSVKVGESI---EMILVNEVGDKMYAPVRREQIE 65
Query: 65 KFRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAIPMNVFEFKP 124
K + EG + ++ Y+++ K+K+ + +T +
Sbjct: 66 KIERCLTEGVWKIITTITLNHTSGQYRISDLKYKIGFVFKTTVSPCD-TVFDALFLSLAK 124
Query: 125 FNEILS-STVEEVSTDVIGHVIERGDIRETEKDRRKSRVIDLTLED 169
F+ ILS S + DV+G V++R +I++ + + ++ ID L D
Sbjct: 125 FDVILSGSANSNILHDVMGQVVDRSEIKDLNANNKSTKKIDFHLRD 170
>gb|AAD22306.1| putative replication protein A1 [Arabidopsis thaliana]
gi|15227179|ref|NP_179226.1| hypothetical protein
[Arabidopsis thaliana] gi|25352496|pir||A84539 probable
replication protein A1 [imported] - Arabidopsis thaliana
Length = 233
Score = 59.7 bits (143), Expect = 3e-08
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 25 AHIWLIREKKVPTSIIFMNMLLVDEKG--GRIHATTRKDLVAKFRSMVQEGGTYQLENAI 82
A + + +K V + ++ ++L D +G RI AT + L + + ++E +
Sbjct: 22 AFVVRVFQKCVGINEFYLGLILADNRGLRSRIEATINRRLASFYSDRIRENEWIVINTFS 81
Query: 83 VDFNESPYKVTSHKHKLSMMHNSTFTKVH-LPAIPMNVFEFKPFNEILSSTVEE-VSTDV 140
V + TSH +++ M + TKV LPAIP ++F PF+ I+ TV V DV
Sbjct: 82 VRLHNEGIHATSHDYRICFMDQTIVTKVSGLPAIP--YYDFTPFDYIIEKTVSTGVLVDV 139
Query: 141 IGHVIERGDIRETEKDRR 158
IG +IE G++ E + R+
Sbjct: 140 IGALIEIGNLTEDYRGRK 157
>ref|NP_178584.2| hypothetical protein [Arabidopsis thaliana]
Length = 572
Score = 59.7 bits (143), Expect = 3e-08
Identities = 37/167 (22%), Positives = 83/167 (49%), Gaps = 8/167 (4%)
Query: 6 TPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVAK 65
T +S V + N ++ V++ H+W + V T +++++ DE G ++ T RK + K
Sbjct: 8 TYLSDVKPFKTNWRVRVKILHLWRQTKDNVET----LDVIICDENGSKMQVTLRKHYIGK 63
Query: 66 FRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAIPMNVF-EFKP 124
F ++ G ++N + + YK++S + + HN+ +K ++ +VF +
Sbjct: 64 FHRSLKVGDWKIIDNFNLSPSTGKYKISSLSYPMGFKHNTEVSK--CDSVSDSVFLDLAD 121
Query: 125 FNEILSSTVEE-VSTDVIGHVIERGDIRETEKDRRKSRVIDLTLEDL 170
F I + + +E V D++G V+ G + E + ++ ++ + D+
Sbjct: 122 FEGIKTESYDENVLIDILGQVVSVGKVDEIVAQNKPNKKLEFQIRDV 168
>dbj|BAD87333.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
gi|57899579|dbj|BAD87158.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 1083
Score = 58.9 bits (141), Expect = 5e-08
Identities = 46/148 (31%), Positives = 74/148 (49%), Gaps = 11/148 (7%)
Query: 6 TPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVAK 65
T I + G N ++ RV+ +W + K T I ++++LVDEKGG IHA L+
Sbjct: 517 TSIDKLFEGDDNSRLLARVSRLWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPLLLQV 576
Query: 66 FRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKV-HLPAIPMN----VF 120
F+ ++ EG Y L++ V + Y+ ++ MM + +T V +P N V+
Sbjct: 577 FKPLLTEGKVYYLDSYRVKTSNKSYRPVANP---LMMTFTKWTSVEQCLDVPFNFPTVVY 633
Query: 121 EFKPFNEILSSTVE--EVSTDVIGHVIE 146
P NE+ S+ V+ E DVIG + E
Sbjct: 634 SLTPLNEV-SNFVDKNESFVDVIGVITE 660
>dbj|BAB11360.1| replication protein A1-like protein [Arabidopsis thaliana]
Length = 543
Score = 57.8 bits (138), Expect = 1e-07
Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 5/165 (3%)
Query: 6 TPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVAK 65
T +S V + N + V++ H+W R+ K S +++++ DE G ++H T RK + K
Sbjct: 8 TYLSDVKPFKTNWCVRVKILHLW--RQTK-DASRETLDVIICDENGSKMHITIRKHYIGK 64
Query: 66 FRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAIPMNVFEFKPF 125
F ++ G ++N + YK++S ++++ HN+ K P + F
Sbjct: 65 FHRSIKVGDWKIIDNFTLSPLTGKYKISSLTYRMAFNHNTDVIKCD-PVSDSVFLDLADF 123
Query: 126 NEILSSTVEE-VSTDVIGHVIERGDIRETEKDRRKSRVIDLTLED 169
+ + + +E V D++G V+ G + E + ++ ++ + D
Sbjct: 124 EGVKTESYDENVLIDILGQVVRVGKVDEIMAQNKPNKKLEFQIRD 168
>gb|AAM15355.1| putative replication protein A1 [Arabidopsis thaliana]
gi|6598496|gb|AAF18617.1| putative replication protein
A1 [Arabidopsis thaliana] gi|15224358|ref|NP_178919.1|
hypothetical protein [Arabidopsis thaliana]
gi|25352476|pir||B84501 probable replication protein A1
[imported] - Arabidopsis thaliana
Length = 228
Score = 57.8 bits (138), Expect = 1e-07
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 25 AHIWLIREKKVPTSIIFMNMLLVDEKG--GRIHATTRKDLVAKFRSMVQEGGTYQLENAI 82
A + + +K V + + ++L D +G RI AT + L + + ++E +
Sbjct: 22 AFVVRVFQKCVGINEFDLGLILADNRGMRSRIEATINRRLASFYSDRIRENEWIVINTFS 81
Query: 83 VDFNESPYKVTSHKHKLSMMHNSTFTKVH-LPAIPMNVFEFKPFNEILSSTVEE-VSTDV 140
V + TSH +++ M + TKV LPAIP ++F PF+ I+ TV V DV
Sbjct: 82 VRLHNEGIHATSHDYRICFMDQTIVTKVSGLPAIP--YYDFTPFDYIIERTVSTGVLVDV 139
Query: 141 IGHVIERGDIRETEKDRRK 159
IG +IE G++ E + R K
Sbjct: 140 IGVLIEVGNLTEDYRGRNK 158
>ref|XP_470551.1| Putative helicase [Oryza sativa (japonica cultivar-group)]
gi|24960752|gb|AAN65446.1| Putative helicase [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 57.4 bits (137), Expect = 2e-07
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 6 TPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVAK 65
TPI+ + GR + +CVR++ IW R +I ++++L+D+KG I+A D +
Sbjct: 245 TPIAELRPGRYDYMICVRISRIWEFRGTNEDDNIKHLDLVLLDQKGDAIYAEIPPDAIPL 304
Query: 66 FRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTK-----VHLPAIPMNVF 120
+QEG + V+ + Y+ + + + + + + + P ++
Sbjct: 305 LNQYLQEGNIVYISKITVNNAKPSYRAVGNPYMIKLNKRTCIIEAKDQPMDFPKYTFDLV 364
Query: 121 EFKPFNEILSSTVEEVSTDVIGHVIERGD---IRETEKDRRKSRVIDL 165
F ++ S T + DVIG +I + I + D R R++ L
Sbjct: 365 SFDKLHDFTSKT--DRFLDVIGKIIAVSNAAMISTSSSDYRMRRIVKL 410
>ref|NP_198524.1| hypothetical protein [Arabidopsis thaliana]
Length = 566
Score = 56.6 bits (135), Expect = 3e-07
Identities = 37/160 (23%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 6 TPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVAK 65
T +S V + N + V++ H+W R+ K S +++++ DE G ++H T RK + K
Sbjct: 36 TYLSDVKPFKTNWCVRVKILHLW--RQTK-DASRETLDVIICDENGSKMHITIRKHYIGK 92
Query: 66 FRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAIPMNVFEFKPF 125
F ++ G ++N + YK++S ++++ HN+ K P + F
Sbjct: 93 FHRSIKVGDWKIIDNFTLSPLTGKYKISSLTYRMAFNHNTDVIKCD-PVSDSVFLDLADF 151
Query: 126 NEILSSTVEE-VSTDVIGHVIERGDIRETEKDRRKSRVID 164
+ + + +E V D++G V+ G + E + ++ +D
Sbjct: 152 EGVKTESYDENVLIDILGQVVRVGKVDEIMAQNKPNKKLD 191
>gb|AAC95166.1| putative replication protein A1 [Arabidopsis thaliana]
gi|15225003|ref|NP_178646.1| hypothetical protein
[Arabidopsis thaliana] gi|25363334|pir||F84472 probable
replication protein A1 [imported] - Arabidopsis thaliana
Length = 456
Score = 55.8 bits (133), Expect = 5e-07
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 26 HIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVAKFRSMVQEGGTYQLENAIVDF 85
++W K SI M+LVD+ G +++A R++ + KF V EG + ++
Sbjct: 2 NVWRQYSVKAGESI---KMILVDKAGDKMYAAVRREQIKKFERCVTEGVWKIITTITLNP 58
Query: 86 NESPYKVTSHKHKLSMMHNSTFTKVHLPAIPMNVFEFKPFNEILS-STVEEVSTDVIGHV 144
Y+++ K+K+ + +T + + + F+ ILS ST + DV+G V
Sbjct: 59 TSDQYRISDLKYKIGFVFKTTVSPCDTVSDSL-FLSLAKFDVILSGSTNSNILHDVMGQV 117
Query: 145 IERGDIRETEKDRRKSRVIDLTLED 169
I+R +I++ + + ++ ID L D
Sbjct: 118 IDRSEIQDLNANNKPTKKIDFHLRD 142
>ref|NP_175703.1| replication protein-related [Arabidopsis thaliana]
gi|12324642|gb|AAG52278.1| putative replication protein;
94555-97079 [Arabidopsis thaliana]
Length = 566
Score = 55.5 bits (132), Expect = 6e-07
Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 5 YTPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVA 64
YT I + + + + V++ H W K S M+L DE G +I A +K+ +
Sbjct: 7 YTAIKNLKPFKTSWCIQVKILHAWNHYTKGSGMSY---EMMLADEDGNKIQAGIKKEHLL 63
Query: 65 KFRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAIPMNVF-EFK 123
K + V+ G +E V Y+ T+H +++++ ++ F+ + P I ++ +
Sbjct: 64 KLQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFS--NSPTISDEIWLDLV 121
Query: 124 PFNEILSSTVEEVS-TDVIGHVIERGDIRETEKDRRKSRVIDLTLEDLE 171
FN++LS T+++ +VIG ++ G+I+ + + ++ ID L D +
Sbjct: 122 NFNDVLSGTLDQNKLVNVIGQLVNVGEIQLLDVQGKPTKKIDFQLRDTD 170
>gb|AAD32756.1| putative replication protein A1 [Arabidopsis thaliana]
gi|15226034|ref|NP_178764.1| hypothetical protein
[Arabidopsis thaliana] gi|25363326|pir||A84487 probable
replication protein A1 [imported] - Arabidopsis thaliana
Length = 458
Score = 55.5 bits (132), Expect = 6e-07
Identities = 28/128 (21%), Positives = 64/128 (49%), Gaps = 2/128 (1%)
Query: 43 NMLLVDEKGGRIHATTRKDLVAKFRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMM 102
+M+L D +G +IHA+ +++ + +F ++ G +EN + + +K T H++K+ M
Sbjct: 8 DMVLSDVRGKKIHASVKREHLNRFERLIVPGEWRAIENFGLTYATGQFKATDHRYKMGFM 67
Query: 103 HNSTFTKVHLPAIPMNVFEFKPFNEILSSTV-EEVSTDVIGHVIERGDIRETEKDRRKSR 161
+ ++ P FN++L+ + + DV+G ++ G++ + + ++
Sbjct: 68 AQTRVVRID-PLSDSYFLSLTAFNDVLNGGLNQNYLIDVVGQIVNVGEMETIDVHNQPTK 126
Query: 162 VIDLTLED 169
ID L D
Sbjct: 127 KIDFELRD 134
>ref|NP_175123.1| hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 55.5 bits (132), Expect = 6e-07
Identities = 40/138 (28%), Positives = 68/138 (48%), Gaps = 6/138 (4%)
Query: 25 AHIWLIREKKVPTSIIFMNMLLVDEKG--GRIHATTRKDLVAKFRSMVQEGGTYQLENAI 82
A + + +K V + + ++L D +G RI T + L + + ++E +
Sbjct: 22 AFVVRVFQKCVGINEFDLGLILADNRGMRSRIETTINRCLASFYSDRIRENEWIVINTFS 81
Query: 83 VDFNESPYKVTSHKHKLSMMHNSTFTKVH-LPAIPMNVFEFKPFNEILSSTVE-EVSTDV 140
V + TSH +++ M + TKV LPAIP ++F PF+ I+ TV V DV
Sbjct: 82 VRLHNEGIHATSHDYRICFMDQTIVTKVSGLPAIP--YYDFTPFDYIIERTVSTRVLVDV 139
Query: 141 IGHVIERGDIRETEKDRR 158
IG +IE G++ E + R+
Sbjct: 140 IGALIEVGNLTEDYRGRK 157
>gb|AAP52594.1| putative DNA binding protein [Oryza sativa (japonica
cultivar-group)] gi|37532010|ref|NP_920307.1| putative
DNA binding protein [Oryza sativa (japonica
cultivar-group)] gi|22857582|gb|AAN09856.1| putative DNA
binding protein [Oryza sativa (japonica cultivar-group)]
Length = 454
Score = 53.1 bits (126), Expect = 3e-06
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 8 ISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVAKFR 67
IS +S G N ++ RV+ +W + T I +++L+DE G IHA + K +
Sbjct: 6 ISQLSFGDSNKRIHARVSRLWNFTDLNDDTKIFHTDLVLLDEIGTSIHAQIYPPITEKMK 65
Query: 68 SMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHL---PAIPMNVFEFKP 124
+++E Y +++ + Y+ ++ + + + T + H+ P P F P
Sbjct: 66 PLLKEEKVYYIDSFTIRAANRTYRPVAN-NLMILFSKWTTLEEHINVPPHFPSITFSLTP 124
Query: 125 FNEILSSTVEEVS--TDVIGHVIERGDIRETEKDRRKSRVIDLTLE 168
F ++ S VE+ S D++G + E G + R + + TL+
Sbjct: 125 FEDV-PSLVEKNSFYVDIMGVITEVGAVTTIRPKSRNAESLKRTLQ 169
>dbj|BAD81453.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|56784071|dbj|BAD81308.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 249
Score = 53.1 bits (126), Expect = 3e-06
Identities = 41/159 (25%), Positives = 72/159 (44%), Gaps = 3/159 (1%)
Query: 5 YTPISAVSGGRKNLKMCVRVAHIWLIREKKVPTSIIFMNMLLVDEKGGRIHATTRKDLVA 64
+T +S +S G N ++CVRV+ W ++K I+ ++L+DEKG I A
Sbjct: 13 HTLLSDLSLGDDNERICVRVSRFWAFCDQKDDDKILHFGLVLIDEKGTSIAAQIYPPCDE 72
Query: 65 KFRSMVQEGGTYQLENAIVDFNESPYKVTSHKHKLSMMH-NSTFTKVHLPA-IPMNVFEF 122
FR ++ EG Y ++ V YK + + +V PA IP+ +
Sbjct: 73 IFRPIITEGKVYYIKYFRVRKCNRQYKPVDNCMSIYFTRWTKLEERVDPPAEIPLYTYSL 132
Query: 123 KPFNEILSSTVEEVS-TDVIGHVIERGDIRETEKDRRKS 160
PF + S ++ S TD+IG + + + + ++S
Sbjct: 133 SPFGGLRSRVGKKDSFTDIIGIITQLSPVTPLQGTVKRS 171
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 270,356,960
Number of Sequences: 2540612
Number of extensions: 10099905
Number of successful extensions: 24395
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 24316
Number of HSP's gapped (non-prelim): 137
length of query: 171
length of database: 863,360,394
effective HSP length: 119
effective length of query: 52
effective length of database: 561,027,566
effective search space: 29173433432
effective search space used: 29173433432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 70 (31.6 bits)
Medicago: description of AC135799.5