Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135796.9 - phase: 0 /pseudo
         (911 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...   160  2e-37
ref|NP_199327.3| DNA-directed RNA polymerase, putative [Arabidop...   160  2e-37
ref|XP_470900.1| putative RNA polymerase III [Oryza sativa (japo...   133  2e-29
gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 5...   100  4e-19
ref|NP_081699.1| RNA polymerase III subunit RPC2 [Mus musculus] ...    94  2e-17
ref|XP_343189.2| PREDICTED: similar to RNA polymerase III subuni...    94  2e-17
emb|CAD97689.1| hypothetical protein [Homo sapiens] gi|42476127|...    94  2e-17
emb|CAI30267.1| hypothetical protein [Pongo pygmaeus]                  94  2e-17
gb|AAH46238.1| Polymerase (RNA) III (DNA directed) polypeptide B...    94  2e-17
dbj|BAC30327.1| unnamed protein product [Mus musculus]                 94  2e-17
ref|XP_636731.1| RNA polymerase III, second largest subunit [Dic...    94  2e-17
gb|AAM18214.1| RNA polymerase III subunit RPC2 [Homo sapiens]          93  5e-17
ref|XP_317312.2| ENSANGP00000006850 [Anopheles gambiae str. PEST...    91  2e-16
ref|XP_531760.1| PREDICTED: similar to DNA-directed RNA polymera...    91  2e-16
emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis]       91  2e-16
emb|CAG03394.1| unnamed protein product [Tetraodon nigroviridis]       91  2e-16
ref|XP_615703.1| PREDICTED: similar to DNA-directed RNA polymera...    87  3e-15
emb|CAA93558.1| SPAC4G9.08c [Schizosaccharomyces pombe] gi|19114...    86  4e-15
ref|XP_625037.1| PREDICTED: similar to DNA-directed RNA polymera...    83  5e-14
ref|XP_599689.1| PREDICTED: similar to hypothetical protein, par...    82  6e-14

>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score =  160 bits (404), Expect = 2e-37
 Identities = 96/243 (39%), Positives = 139/243 (56%), Gaps = 60/243 (24%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAER--- 57
           ++V+KAMGME DQE+VQ++GRDPR+S  L+PSIEEC   G+ TQ QALDY+++K ++   
Sbjct: 267 IIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISY 326

Query: 58  --------QAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF-- 107
                   +A +ILR+ FLA+VPV   NFR KC YV VM+RR+++A+LNKDAMDDK +  
Sbjct: 327 GTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVG 386

Query: 108 -------KKIIGLCWKQTIGVIWPSYLSSI*GSF*VDDN*N*VCGGQIVG*ARQS*EV*L 160
                   ++I L ++     +    + ++       D+                     
Sbjct: 387 NKRLELSGQLISLLFEDLFKTMLSEAIKNV-------DH--------------------- 418

Query: 161 SYFQPDLSISGFQFT*FLWMCL*QLINRD---CITPGLERTLSTGNFDVKRFKMHKSGVT 217
                 +  S F F+        Q +N+D    I+ GLERTLSTGNFD+KRF+MH+ G+T
Sbjct: 419 -ILNKPIRASRFDFS--------QCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMT 469

Query: 218 QVI 220
           QV+
Sbjct: 470 QVL 472


>ref|NP_199327.3| DNA-directed RNA polymerase, putative [Arabidopsis thaliana]
          Length = 1150

 Score =  160 bits (404), Expect = 2e-37
 Identities = 96/243 (39%), Positives = 139/243 (56%), Gaps = 60/243 (24%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAER--- 57
           ++V+KAMGME DQE+VQ++GRDPR+S  L+PSIEEC   G+ TQ QALDY+++K ++   
Sbjct: 246 IIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISY 305

Query: 58  --------QAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF-- 107
                   +A +ILR+ FLA+VPV   NFR KC YV VM+RR+++A+LNKDAMDDK +  
Sbjct: 306 GTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVG 365

Query: 108 -------KKIIGLCWKQTIGVIWPSYLSSI*GSF*VDDN*N*VCGGQIVG*ARQS*EV*L 160
                   ++I L ++     +    + ++       D+                     
Sbjct: 366 NKRLELSGQLISLLFEDLFKTMLSEAIKNV-------DH--------------------- 397

Query: 161 SYFQPDLSISGFQFT*FLWMCL*QLINRD---CITPGLERTLSTGNFDVKRFKMHKSGVT 217
                 +  S F F+        Q +N+D    I+ GLERTLSTGNFD+KRF+MH+ G+T
Sbjct: 398 -ILNKPIRASRFDFS--------QCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMT 448

Query: 218 QVI 220
           QV+
Sbjct: 449 QVL 451


>ref|XP_470900.1| putative RNA polymerase III [Oryza sativa (japonica
           cultivar-group)] gi|29788820|gb|AAP03366.1| putative RNA
           polymerase III [Oryza sativa (japonica cultivar-group)]
          Length = 1174

 Score =  133 bits (335), Expect = 2e-29
 Identities = 68/116 (58%), Positives = 83/116 (70%), Gaps = 9/116 (7%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKA----- 55
           +VVMKAMGME DQEV Q++GRDPRY  LL PSI+EC    I+TQ QAL Y+D K      
Sbjct: 268 IVVMKAMGMESDQEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGA 327

Query: 56  ----ERQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF 107
               E ++ +ILR+ F+A+VPV   NFRPKCIY AVM+RR+MDAILN D  DDK +
Sbjct: 328 GNQKEGRSKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDY 383



 Score = 50.4 bits (119), Expect = 3e-04
 Identities = 21/35 (60%), Positives = 29/35 (82%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           I  + IT GLER +STGN+D+KRF+MH+ GV+QV+
Sbjct: 433 IKENIITHGLERAISTGNWDIKRFRMHRKGVSQVL 467


>gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
           gi|49071544|ref|XP_400061.1| hypothetical protein
           UM02446.1 [Ustilago maydis 521]
          Length = 1169

 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 40/233 (17%)

Query: 2   VVMKAMGMEHDQEVVQLI-GRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAE---- 56
           V  KAMG++ D+E++QL+ G D  +  L   ++EE  ++GI+T+ QALD++ ++A+    
Sbjct: 262 VAFKAMGIQADREILQLVAGHDDIHKELFAINLEEAARLGIYTRKQALDFIGARAKASRK 321

Query: 57  ---------RQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF 107
                     +A ++L    +A+VPV   NFRPK IY+A M+RR++ A+ ++  +DD+ +
Sbjct: 322 PLSMRRPLSEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLMAMQDEKKVDDRDY 381

Query: 108 KKIIGLCWKQTIGVIWPSYLSSI*GSF*VDDN*N*VCGGQIVG*ARQS*EV*LSYFQPDL 167
              +G    +  G +       +   F  D   N                +     +P+ 
Sbjct: 382 ---VGNKRLELAGQLLSLLFEDLFKKFNSDLKMN----------------IDKVLKKPNR 422

Query: 168 SISGFQFT*FLWMCL*QLINRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           ++    F  F +       N D IT G  R +STGN+ +KRFKM ++G+T V+
Sbjct: 423 TVEFDAFNQFHF-------NGDYITSGFVRAISTGNWSLKRFKMERAGITHVL 468


>ref|NP_081699.1| RNA polymerase III subunit RPC2 [Mus musculus]
           gi|45829714|gb|AAH68143.1| RNA polymerase III subunit
           RPC2 [Mus musculus] gi|51704303|sp|P59470|RPC2_MOUSE
           DNA-directed RNA polymerase III subunit 127.6 kDa
           polypeptide (RNA polymerase III subunit 2) (RPC2)
          Length = 1133

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 15/121 (12%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ-- 58
           +++ KAMG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ  
Sbjct: 237 VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 296

Query: 59  ------------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                       A  +L  T L +VPV  +NFR KCIY AVM+RR++ A    + +DD+ 
Sbjct: 297 WGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRD 355

Query: 107 F 107
           +
Sbjct: 356 Y 356



 Score = 41.6 bits (96), Expect = 0.12
 Identities = 18/35 (51%), Positives = 26/35 (73%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           + +D IT G+   +STGN+ +KRFKM + GVTQV+
Sbjct: 406 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 440


>ref|XP_343189.2| PREDICTED: similar to RNA polymerase III subunit RPC2 [Rattus
           norvegicus]
          Length = 1213

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 15/121 (12%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ-- 58
           +++ KAMG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ  
Sbjct: 317 VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 376

Query: 59  ------------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                       A  +L  T L +VPV  +NFR KCIY AVM+RR++ A    + +DD+ 
Sbjct: 377 WGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRD 435

Query: 107 F 107
           +
Sbjct: 436 Y 436



 Score = 41.6 bits (96), Expect = 0.12
 Identities = 18/35 (51%), Positives = 26/35 (73%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           + +D IT G+   +STGN+ +KRFKM + GVTQV+
Sbjct: 486 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 520


>emb|CAD97689.1| hypothetical protein [Homo sapiens] gi|42476127|ref|NP_060552.3|
           polymerase (RNA) III (DNA directed) polypeptide B [Homo
           sapiens]
          Length = 1133

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 15/121 (12%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ-- 58
           +++ KAMG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ  
Sbjct: 237 VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 296

Query: 59  ------------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                       A  +L  T L +VPV  +NFR KCIY AVM+RR++ A    + +DD+ 
Sbjct: 297 WGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRD 355

Query: 107 F 107
           +
Sbjct: 356 Y 356



 Score = 41.6 bits (96), Expect = 0.12
 Identities = 18/35 (51%), Positives = 26/35 (73%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           + +D IT G+   +STGN+ +KRFKM + GVTQV+
Sbjct: 406 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 440


>emb|CAI30267.1| hypothetical protein [Pongo pygmaeus]
          Length = 1116

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 15/121 (12%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ-- 58
           +++ KAMG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ  
Sbjct: 237 VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 296

Query: 59  ------------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                       A  +L  T L +VPV  +NFR KCIY AVM+RR++ A    + +DD+ 
Sbjct: 297 WGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRD 355

Query: 107 F 107
           +
Sbjct: 356 Y 356


>gb|AAH46238.1| Polymerase (RNA) III (DNA directed) polypeptide B [Homo sapiens]
           gi|29428029|sp|Q9NW08|RPC2_HUMAN DNA-directed RNA
           polymerase III subunit 127.6 kDa polypeptide (RNA
           polymerase III subunit 2) (RPC2)
          Length = 1133

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 15/121 (12%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ-- 58
           +++ KAMG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ  
Sbjct: 237 VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 296

Query: 59  ------------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                       A  +L  T L +VPV  +NFR KCIY AVM+RR++ A    + +DD+ 
Sbjct: 297 WGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRD 355

Query: 107 F 107
           +
Sbjct: 356 Y 356



 Score = 41.6 bits (96), Expect = 0.12
 Identities = 18/35 (51%), Positives = 26/35 (73%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           + +D IT G+   +STGN+ +KRFKM + GVTQV+
Sbjct: 406 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 440


>dbj|BAC30327.1| unnamed protein product [Mus musculus]
          Length = 551

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 15/121 (12%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ-- 58
           +++ KAMG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ  
Sbjct: 237 VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 296

Query: 59  ------------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                       A  +L  T L +VPV  +NFR KCIY AVM+RR++ A    + +DD+ 
Sbjct: 297 WGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRD 355

Query: 107 F 107
           +
Sbjct: 356 Y 356



 Score = 41.6 bits (96), Expect = 0.12
 Identities = 18/35 (51%), Positives = 26/35 (73%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           + +D IT G+   +STGN+ +KRFKM + GVTQV+
Sbjct: 406 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 440


>ref|XP_636731.1| RNA polymerase III, second largest subunit [Dictyostelium
           discoideum] gi|60465151|gb|EAL63250.1| RNA polymerase
           III, second largest subunit [Dictyostelium discoideum]
          Length = 1608

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 15/121 (12%)

Query: 2   VVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAE----- 56
           +V+K MG+E DQE+ QL+G D  +   + PS+EEC K G+ T AQALDY+ S+ +     
Sbjct: 251 IVLKGMGVETDQEMAQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRP 310

Query: 57  ----------RQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                      +A +IL    L +VPV  YNFR K IY+++MIRRI+ A  +K  +DDK 
Sbjct: 311 YGVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKD 370

Query: 107 F 107
           +
Sbjct: 371 Y 371


>gb|AAM18214.1| RNA polymerase III subunit RPC2 [Homo sapiens]
          Length = 1133

 Score = 92.8 bits (229), Expect = 5e-17
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 15/121 (12%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ-- 58
           +++ KAMG+E DQE+VQ+IG          PS+EEC K  IFTQ QAL Y+ +K  RQ  
Sbjct: 237 VIIFKAMGVESDQEIVQMIGTAEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 296

Query: 59  ------------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                       A  +L  T L +VPV  +NFR KCIY AVM+RR++ A    + +DD+ 
Sbjct: 297 WGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRD 355

Query: 107 F 107
           +
Sbjct: 356 Y 356



 Score = 41.6 bits (96), Expect = 0.12
 Identities = 18/35 (51%), Positives = 26/35 (73%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           + +D IT G+   +STGN+ +KRFKM + GVTQV+
Sbjct: 406 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 440


>ref|XP_317312.2| ENSANGP00000006850 [Anopheles gambiae str. PEST]
           gi|55237532|gb|EAA12689.2| ENSANGP00000006850 [Anopheles
           gambiae str. PEST]
          Length = 1112

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 15/121 (12%)

Query: 2   VVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSK--AER-- 57
           +++KAMG+  DQE++QL+G DP       PS+ E     +FTQ +AL+Y+ SK  A+R  
Sbjct: 216 IILKAMGIASDQEIMQLVGIDPETQKRFAPSLLEAANHKVFTQQRALEYMGSKLIAKRFT 275

Query: 58  -----------QAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                      +A ++L  T LA+VPV  +NF+ K IYVA+MIRR+M A L++ A+DD+ 
Sbjct: 276 TAATKYKTTADEARDLLATTILAHVPVPSFNFQVKAIYVALMIRRVMAAELDRSAVDDRD 335

Query: 107 F 107
           +
Sbjct: 336 Y 336



 Score = 44.3 bits (103), Expect = 0.019
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 191 ITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           IT GLE  +STGN+ +KRFKM ++GVTQV+
Sbjct: 391 ITAGLETAISTGNWTIKRFKMERAGVTQVL 420


>ref|XP_531760.1| PREDICTED: similar to DNA-directed RNA polymerase III subunit 127.6
           kDa polypeptide (RNA polymerase III subunit 2) (RPC2)
           [Canis familiaris]
          Length = 1422

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 15/118 (12%)

Query: 4   MKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ----- 58
           ++AMG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ     
Sbjct: 450 LEAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGG 509

Query: 59  ---------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF 107
                    A  +L  T L +VPV  +NFR KCIY AVM+RR++ A    + +DD+ +
Sbjct: 510 GPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRDY 566



 Score = 41.6 bits (96), Expect = 0.12
 Identities = 18/35 (51%), Positives = 26/35 (73%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           + +D IT G+   +STGN+ +KRFKM + GVTQV+
Sbjct: 616 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 650


>emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1171

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 14/119 (11%)

Query: 2   VVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ--- 58
           ++ K MG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ   
Sbjct: 267 IIFKGMGVESDQEIVQMIGTEENVMASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRMW 326

Query: 59  ----------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF 107
                     A  +L    L +VPV  +NFR KCIY+AVM+RR++ A    + +DD+ +
Sbjct: 327 GGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILA-QGDNKVDDRDY 384



 Score = 41.6 bits (96), Expect = 0.12
 Identities = 18/35 (51%), Positives = 26/35 (73%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           + +D IT G+   +STGN+ +KRFKM + GVTQV+
Sbjct: 434 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 468


>emb|CAG03394.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 271

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 14/119 (11%)

Query: 2   VVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ--- 58
           ++ K MG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ   
Sbjct: 138 IIFKGMGVESDQEIVQMIGTEENVMASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRMW 197

Query: 59  ----------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF 107
                     A  +L    L +VPV  +NFR KCIY+AVM+RR++ A    + +DD+ +
Sbjct: 198 GGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILA-QGDNKVDDRDY 255


>ref|XP_615703.1| PREDICTED: similar to DNA-directed RNA polymerase III subunit 127.6
           kDa polypeptide (RNA polymerase III subunit 2) (RPC2),
           partial [Bos taurus]
          Length = 384

 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 48/113 (42%), Positives = 69/113 (60%), Gaps = 7/113 (6%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQAF 60
           +++ KAMG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ  
Sbjct: 102 VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 161

Query: 61  NILRE-----TFLANVP-VHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF 107
            + R+     +  AN   V  +NFR KCIY AVM+RR++ A    + +DD+ +
Sbjct: 162 TLKRKEVEAASLQANPKMVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRDY 213


>emb|CAA93558.1| SPAC4G9.08c [Schizosaccharomyces pombe]
           gi|19114602|ref|NP_593690.1| hypothetical protein
           SPAC4G9.08c [Schizosaccharomyces pombe 972h-]
           gi|1710663|sp|Q10233|RPC2_SCHPO Putative DNA-directed
           RNA polymerase III 130 kDa polypeptide (RNA polymerase
           III subunit 2)
          Length = 1165

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 42/121 (34%), Positives = 72/121 (58%), Gaps = 14/121 (11%)

Query: 1   MVVMKAMGMEHDQEVVQLI-GRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAE--- 56
           +VV+KAMG++ DQE+ +L+ G +  Y  L  PSIEEC K+ I+T  QAL+Y+ ++ +   
Sbjct: 262 VVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNR 321

Query: 57  ----------RQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
                      +A  +L    LA++ V    FRPK +Y+ +M RR++ A+++   +DD+ 
Sbjct: 322 RAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRD 381

Query: 107 F 107
           +
Sbjct: 382 Y 382



 Score = 43.9 bits (102), Expect = 0.024
 Identities = 19/35 (54%), Positives = 27/35 (76%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           ++ D IT G+ R LSTGN+ +KRFKM ++GVT V+
Sbjct: 435 VHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVL 469


>ref|XP_625037.1| PREDICTED: similar to DNA-directed RNA polymerase III subunit 127.6
           kDa polypeptide (RNA polymerase III subunit 2) (RPC2)
           [Apis mellifera]
          Length = 1134

 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 39/118 (33%), Positives = 72/118 (60%), Gaps = 12/118 (10%)

Query: 2   VVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQAFN 61
           ++ KAMG+  DQE++QLIG +  +     PS+EEC  + +F Q QAL ++ +K +++ F+
Sbjct: 240 IIFKAMGIVSDQEIMQLIGTEEEFMKKFAPSLEECHVLNVFAQNQALRFLSNKRKQKRFS 299

Query: 62  ILRET------------FLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF 107
           +++ +             L++VPV  +NF+ K  Y+A+MIR++M A  +   +DD+ +
Sbjct: 300 VIKSSITDEMKDALATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKLVDDRDY 357



 Score = 40.4 bits (93), Expect = 0.27
 Identities = 18/35 (51%), Positives = 26/35 (73%)

Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
           + +D IT GL   +S+GN+ +KRFKM + GVTQV+
Sbjct: 407 MRQDQITNGLAFAISSGNWTIKRFKMERHGVTQVL 441


>ref|XP_599689.1| PREDICTED: similar to hypothetical protein, partial [Bos taurus]
          Length = 278

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 47/108 (43%), Positives = 65/108 (59%), Gaps = 7/108 (6%)

Query: 6   AMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQAFNILRE 65
           AMG+E DQE+VQ+IG +        PS+EEC K  IFTQ QAL Y+ +K  RQ   + R+
Sbjct: 1   AMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMTLKRK 60

Query: 66  -----TFLANVP-VHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF 107
                +  AN   V  +NFR KCIY AVM+RR++ A    + +DD+ +
Sbjct: 61  EVEAASLQANPKMVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRDY 107


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.365    0.160    0.668 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,341,102,903
Number of Sequences: 2540612
Number of extensions: 47212353
Number of successful extensions: 211387
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 211181
Number of HSP's gapped (non-prelim): 162
length of query: 911
length of database: 863,360,394
effective HSP length: 137
effective length of query: 774
effective length of database: 515,296,550
effective search space: 398839529700
effective search space used: 398839529700
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 80 (35.4 bits)


Medicago: description of AC135796.9