BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135604.8 + phase: 0 /pseudo
(1050 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 367 1e-99
ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (j... 286 3e-75
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 284 1e-74
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 283 2e-74
gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cult... 281 8e-74
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 279 4e-73
gb|AAP44701.1| putative reverse transcriptase [Oryza sativa (jap... 275 4e-72
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 273 3e-71
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 272 5e-71
gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor] 270 2e-70
gb|AAX95233.1| retrotransposon protein, putative, unclassified [... 269 3e-70
gb|AAX95130.1| retrotransposon protein, putative, unclassified [... 269 3e-70
gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|2540301... 269 4e-70
gb|AAX96121.1| retrotransposon protein, putative, unclassified [... 268 7e-70
gb|AAP53623.1| putative non-LTR retroelement reverse transcripta... 268 9e-70
gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [B... 266 3e-69
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 265 5e-69
emb|CAD41368.2| OSJNBa0088A01.7 [Oryza sativa (japonica cultivar... 265 6e-69
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 263 2e-68
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 263 3e-68
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 367 bits (942), Expect = 1e-99
Identities = 201/510 (39%), Positives = 288/510 (56%), Gaps = 11/510 (2%)
Query: 6 VCGDFNTVRSVEERRS-VRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGDGRSMR 64
+ GD+N ER S + SQ D F +FI + LI++ FTWF+G +S
Sbjct: 8 IMGDYNETLIPAERGSHLISSQGARD---FQNFINNMGLIEISPIKGFFTWFRGQSKS-- 62
Query: 65 RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKCWQDMPGYI 124
+LDR + EW +P+ R SDHCP+L +NWGP+P R L CW P +
Sbjct: 63 KLDRLFVQPEWLTSFPSLKLNILKRSPSDHCPLLAFSSHQNWGPKPFRFLNCWLTHPQCM 122
Query: 125 DFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDSKG 184
I E W S + +KL+ +K ALK W+ + I + LD+
Sbjct: 123 KIISEIWTKNHNSS-----VPDKLRTLKEALKQWNQKEFGIIDDNIKHCEEKIHFLDNIA 177
Query: 185 EEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAARRRL 244
L EL E ++ + + S SR W+++GD+N+++FH++ RR
Sbjct: 178 NSRLLCTNELQERDDAQLNLWTWLKRSESYWALNSRARWIKEGDSNTRYFHTLATIRRHK 237
Query: 245 NSLSSILVDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYLERGGLTKP 304
N L I +G + ++ +F++ F + RP L F KLS E L P
Sbjct: 238 NHLQYIKTEGKNISKPGEIKEEAVAYFQHIFAEEFSTRPVFNGLNFNKLSESECSSLIAP 297
Query: 305 FSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLAKGINST 364
F+ +EI AV CD+ K+PGPDG N F KS W IK D+ + V +F +G L G NS
Sbjct: 298 FTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIYKIVEDFWASGSLPHGCNSA 357
Query: 365 FIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNRQIL 424
FIALIPK P+ NEFRPIS+VG +YKI+AKILA RL++V+ ++ QS+F+K RQIL
Sbjct: 358 FIALIPKTQHPRGFNEFRPISMVGCLYKIIAKILARRLQRVMDHLIGPYQSSFIKGRQIL 417
Query: 425 DGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKWIKECV 484
DG+LIA+ ++D R++K ++ K+DF KA+DS+ W YL+ V+ M+FP+VWR WI+ CV
Sbjct: 418 DGVLIASELIDSCRRMKNEAVVLKLDFHKAFDSISWNYLEWVLCQMNFPLVWRSWIRSCV 477
Query: 485 GTATASVLVNGSPTDEFHLERGLRQGDPLS 514
+A+A+VL+NGSP+ F L+RGLRQGDPLS
Sbjct: 478 MSASAAVLINGSPSSVFKLQRGLRQGDPLS 507
>ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29893671|gb|AAP06925.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 870
Score = 286 bits (732), Expect = 3e-75
Identities = 203/639 (31%), Positives = 316/639 (48%), Gaps = 38/639 (5%)
Query: 6 VCGDFNTVRSVEER--------RSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFK 57
+ GDFN + ++ R R V+D C L ++ L RKFTW
Sbjct: 142 ILGDFNMIYRARDKNNSNLNLARMRRFRAVIDRCE----------LHEIPLQNRKFTWSN 191
Query: 58 GDGRS-MRRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKC 116
++ + +LDR + EW + +P+ + A G SDHCP++LS + PR +
Sbjct: 192 ERRKATLVKLDRCFCNEEWDLAFPHHVLHALPTGPSDHCPLVLSNPQGPHRPRTFKFENF 251
Query: 117 WQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI* 176
W +PG+ D +++ W H L +KL+ V L+DW T + S+ A+L+
Sbjct: 252 WTRVPGFKDKVKDIWSQPSSHTEPMHRLNQKLQRTAVGLRDW----TKGICSE-AKLQFH 306
Query: 177 QA-----SLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANS 231
A LD E +LS E + + L+ + + Q SR+ +R+GDAN+
Sbjct: 307 MALNVIQRLDVAQEHRELSPPETRLRAALKRKVLRLASIERARKKQASRVTHIREGDANT 366
Query: 232 KFFHSVLAARRRLNSLSSILVDG--VVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQ 289
KFFH + ARRR N++ + D V G + + HF + F+ RP + +
Sbjct: 367 KFFHLKVNARRRRNTIQRLKKDSGWAVTHGEK--ESTIHDHFAS-FMGRPGPRPNELNWE 423
Query: 290 FRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTD-LVRFV 348
++ ++ L +PF+E+E+ A+ + + K+PGPDG FFK W IK D L+ F
Sbjct: 424 TLDITLIDLATLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFS 483
Query: 349 TEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGS 408
+ ++ +NS I LIPK +S++++RPISL+ S+ KI AK+LA RLR +
Sbjct: 484 SIYNLRCAHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHE 543
Query: 409 VVSEAQSAFVKNRQILDGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMG 468
++S QSAF+K R I D L + +L++ +LLFK+D KA+DSV W YL ++
Sbjct: 544 LISVNQSAFIKGRSIHDNYLFVRNMTRRYHRLRRAMLLFKLDITKAFDSVRWDYLLALLQ 603
Query: 469 SMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVL 528
FP W W+ + ++T+ VL+NGSP RGLRQGDPLSP LF+LA L +
Sbjct: 604 RKGFPTRWIDWLGALLSSSTSQVLLNGSPGQRIKHGRGLRQGDPLSPLLFILAIDPLQRI 663
Query: 529 MKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLK 588
+ + G + R GR + +S +ADD ++ N + +V L F +GL
Sbjct: 664 LSKATELGAISKLR-GRTTRMQIS--MYADDAVIFINPTQNDVATFANILHRFGTATGLV 720
Query: 589 VNFHKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
N KS + + + L E + K P YLGL
Sbjct: 721 TNLQKSQVAAIRCGNIDLEEVLQGVPAKRANFPLKYLGL 759
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 284 bits (727), Expect = 1e-74
Identities = 207/622 (33%), Positives = 305/622 (48%), Gaps = 31/622 (4%)
Query: 6 VCGDFNTVRSVEER--RSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF-KGDG-R 61
V GDFN E R+ RG + D F D ++D L DL G T+ K +G R
Sbjct: 864 VIGDFNETMWQFEHFSRTPRGEPQMQD---FRDVLQDCELHDLGFKGVPHTYDNKREGWR 920
Query: 62 SMR-RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKC---- 116
+++ RLDR + +W ++ V + SDHCPILL++ ++ P +R KC
Sbjct: 921 NVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLVVKD--PHQLRQ-KCLHYE 977
Query: 117 --WQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELK 174
W+ P I E WV G + K K+M AL+ W A N+ ++ + +
Sbjct: 978 IVWEREPEATQVIEEAWVVAGEKADLGDINKALAKVM-TALRSWSRAKVKNVGRELEKAR 1036
Query: 175 I*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFF 234
A L + + + + ++ L + Q+SR+NWL+D D N+KFF
Sbjct: 1037 KKLAELIESNADRTV-------IRNATDHMNELLYREEMLWLQRSRVNWLKDEDRNTKFF 1089
Query: 235 HSVLAARRRLNSLSSILVDGVVVEGVQPFRQAVFTHFKN--HFLDPRLERPGVGHLQFRK 292
HS R + N +S + V +++ T + + DP L V L K
Sbjct: 1090 HSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTADPNLNPETVTRLIQEK 1149
Query: 293 LSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFH 352
++ + L + F+EDEI A++ KSPGPDG F++ W IK D++ V F
Sbjct: 1150 VTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVRRFF 1209
Query: 353 RNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSE 412
+ G + +G+N T I LIPK P L +FRPISL +YK+++K L NRLR ++ +VS
Sbjct: 1210 QTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSV 1269
Query: 413 AQSAFVKNRQILDGILIAN*VVDEARKLKK---YLLLFKVDFAKAYDSVDWGYLDEVMGS 469
QSAFV+ R I D L+A +K KK +K+D +KAYD VDW +L+ M
Sbjct: 1270 EQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNK 1329
Query: 470 MSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLM 529
+ F W WI +CV + V NG+ F RGLRQGDPL PFLFL A GL++L+
Sbjct: 1330 LGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLL 1389
Query: 530 KALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKV 589
K V T ++V RA + +SHL FADDTLL ++ L + +G +
Sbjct: 1390 KEKVAQNSLTPFKVCRA-APGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLI 1448
Query: 590 NFHKSSLVGVNINDSWLSEAAS 611
N K S++ + +SEA S
Sbjct: 1449 NPAKCSILMGGASTPAVSEAIS 1470
Score = 42.4 bits (98), Expect = 0.083
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 894 WVPNHDDGYSVRGVYDML---------TSQEQPQLHHNMELIWHK*VPLKVSILAWRLLR 944
W P+ + +SVR Y + +S ++ E+IW VP KV I AWR+
Sbjct: 1737 WHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVAS 1796
Query: 945 DRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALW 990
+ L T N R + ++ +C ED H C+ S LW
Sbjct: 1797 NCLATMVNKKKRKL--EQSDMCQICDRENEDDAHALCRCIQASQLW 1840
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 283 bits (725), Expect = 2e-74
Identities = 195/611 (31%), Positives = 300/611 (48%), Gaps = 35/611 (5%)
Query: 7 CGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFK---GDGRSM 63
CGDFN V ++E +R + F ++D LIDL G KFTW + S
Sbjct: 140 CGDFNEVLCLDEHLGMR-ERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSK 198
Query: 64 RRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPV------RLLKCW 117
RLDR + + E+ + +C+ + SDH I + + N G R + R W
Sbjct: 199 VRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIPIQQGFRFEAAW 258
Query: 118 QDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*Q 177
Y + + W G + L+ + V+LKDW A+ ++ KI +++
Sbjct: 259 LRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKILKMERKL 318
Query: 178 ASL------DSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANS 231
SL D +EE+L E++L EL + Q+SR++WLR+GD N+
Sbjct: 319 KSLRQSPVNDVVIQEEKLIEQQLCELFEKEE----------IMARQRSRVDWLREGDRNT 368
Query: 232 KFFHSVLAARRRLNSLSSILVDG----VVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGH 287
FFH+ +ARRR N + ++ D + EG++ + + + + +P V
Sbjct: 369 AFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSS--EPCDSMEEVLD 426
Query: 288 LQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRF 347
K+ G L K ++ +EIK A++ S K+PGPDG F+++ W ++ +
Sbjct: 427 AIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNA 486
Query: 348 VTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIG 407
V F ++ +G+ + + LIPKV + L++FRPISL +YKI +K+LANRL+ +
Sbjct: 487 VRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLP 546
Query: 408 SVVSEAQSAFVKNRQILDGILIAN*VVDEARKL--KKYLLLFKVDFAKAYDSVDWGYLDE 465
+VSE QSAFV R I D L+A + RK K K+D KAYD V+W YL
Sbjct: 547 DIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSG 606
Query: 466 VMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GL 525
+ + F W + CV + +V +NG T RG+RQGDP+SP+LFLL GL
Sbjct: 607 CLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGL 666
Query: 526 NVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMS 585
+ L+ AG G + GR +SHL FADD++ NV+AL+ L + + S
Sbjct: 667 SCLLHKKEVAGELQGIKNGR-HGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSAS 725
Query: 586 GLKVNFHKSSL 596
G K+N HKSS+
Sbjct: 726 GQKINLHKSSI 736
>gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 281 bits (719), Expect = 8e-74
Identities = 194/594 (32%), Positives = 303/594 (50%), Gaps = 20/594 (3%)
Query: 43 LIDLLLSGRKFTWFKGDGRS-MRRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSV 101
L ++ L RKFTW ++ + +LDR + EW + +P+ + A G SDHCP++LS
Sbjct: 11 LHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHAFPTGPSDHCPLVLSN 70
Query: 102 DEENWGPRPVRLLKCWQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAA 161
+ PR + W +PG+ D +++ W H L +KL+ V L+DW
Sbjct: 71 PQGPHRPRTFKFENFWTRVPGFKDKVKDIWSQPSSHTEPMHHLNQKLQRTAVGLRDW--- 127
Query: 162 NTHNLPSKIAELKI*QA-----SLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICW 216
T + S+ A+L+ A LD E +LS E + + L+ + +
Sbjct: 128 -TKGICSE-AKLQFHMALNVIQRLDVAQEHRELSPPETRLRAALKRKVLGLASIERARKK 185
Query: 217 QQSRLNWLRDGDANSKFFHSVLAARRRLNSLSSILVDG--VVVEGVQPFRQAVFTHFKNH 274
Q SR+ +R+GDAN+KFFH + ARRR N++ + D V G + + HF +
Sbjct: 186 QASRVTHIREGDANTKFFHLRVNARRRRNTIQRLKKDSGWAVTHGEKEL--TIHDHFAS- 242
Query: 275 FLDPRLERPGVGHLQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFK 334
F+ RP + + ++ ++ L +PF+E+E+ A+ + + K+PGPDG FFK
Sbjct: 243 FMGRPGPRPNELNWETLDITPIDLATLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFK 302
Query: 335 SFWPEIKTD-LVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKI 393
W IK D L+ F + ++ +NS I LIPK +S++++RPISL+ S+ KI
Sbjct: 303 VCWEIIKDDILLVFSSIYNLRCAHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKI 362
Query: 394 LAKILANRLRQVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEARKLKKYLLLFKVDFAK 453
AK+LA RLR + ++S QSAF+K R I D L ++ +L++ +LLFK+D K
Sbjct: 363 FAKMLALRLRPHMHELISVNQSAFIKGRSIHDNYLFVRNMIRRYHRLRRAMLLFKLDITK 422
Query: 454 AYDSVDWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPL 513
A+DSV W YL ++ FP W W+ + ++T+ VL+NGSP RGLRQGDPL
Sbjct: 423 AFDSVRWDYLLALLQRKGFPTRWIDWLGALLSSSTSQVLLNGSPGQRIKHGRGLRQGDPL 482
Query: 514 SPFLFLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRA 573
SP LF+LA L ++ + G + R GR + +S +ADD ++ N + +V
Sbjct: 483 SPLLFILAIDPLQRILSKATELGAISKLR-GRTTRLRIS--MYADDAVIFINPTQNDVAT 539
Query: 574 LRAGLVMFEAMSGLKVNFHKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
L F +GL N KS + + + L E + K P YLGL
Sbjct: 540 SANILHRFGTATGLVTNLQKSQVAAIRCGNIDLEEVLQGVPAKRANFPLKYLGL 593
Score = 35.8 bits (81), Expect = 7.8
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 4/117 (3%)
Query: 882 VSLQESVTDRWLWVPNHDDGYSVRGVYDMLTSQEQPQLHHNMELIWHK*VPLKVSILAWR 941
V L D+ +W Y+ Y P + N LIW P K AW
Sbjct: 821 VHLDSEEPDQIVWKFTSSGHYTASSAYHA-QCLGAPNTNFN-SLIWKVWAPGKCKFHAWL 878
Query: 942 LLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALWPMVRAWLG 998
++++R+ T LA RG + C + E HL C +W +V W G
Sbjct: 879 IIQNRVWTSDRLATRG-WRNNGHCPLCRC-DTETALHLVAMCRYTKRIWRLVATWAG 933
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana] gi|7488321|pir||T01871
RNA-directed DNA polymerase homolog T24M8.8 -
Arabidopsis thaliana
Length = 1164
Score = 279 bits (713), Expect = 4e-73
Identities = 191/637 (29%), Positives = 319/637 (49%), Gaps = 25/637 (3%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGDGRS--M 63
V GDFN + E + G V F + I L DL G FTW+ R+
Sbjct: 38 VLGDFNQILHPSEHSTSDGFNVDRPTRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVA 97
Query: 64 RRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEEN-WGPRPVRLLKCWQDMPG 122
++LDR L++ +W +P+ + + SDH LS+ + +P R
Sbjct: 98 KKLDRILVNDKWTTTFPSSLGLFGEPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDEN 157
Query: 123 YIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAE-----LKI*Q 177
++ I KW V+G + + KLK +K ++D+ N ++ + E L
Sbjct: 158 FLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQS 217
Query: 178 ASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSV 237
L S E E I L+ S +Q+SR+NWLR+GD NS +FH +
Sbjct: 218 VLLASPCPSNAAIEAETQRKWRI------LAEAEASFFYQRSRVNWLREGDMNSSYFHKM 271
Query: 238 LAARRRLNSLSSILVD--GVVVEGVQPFRQAVFTHFKNHFLD----PRLERPGVGHLQFR 291
+AR+ LN + L D G +EG Q +F+++ P E+ + +L
Sbjct: 272 ASARQSLNHIH-FLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQGLPLFEQADISNLLSY 330
Query: 292 KLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEF 351
+ S ++ L PFS ++IK A + K+ GPDG + FF + WP I ++ + EF
Sbjct: 331 RCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEF 390
Query: 352 HRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVS 411
+GKL K N+T + LIPK+ + S+++FRPIS + ++YK+++K+L +RL+ + + +S
Sbjct: 391 FTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAIS 450
Query: 412 EAQSAFVKNRQILDGILIAN*VVDEARKLK-KYLLLFKVDFAKAYDSVDWGYLDEVMGSM 470
+QSAF+ R L+ +L+A +V K + KVD KA+DSV W ++ + ++
Sbjct: 451 HSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRAL 510
Query: 471 SFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMK 530
+ P + WI EC+ TA+ SV++NG F +GLRQGDP+SP+LF+LA + L++
Sbjct: 511 NVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQ 570
Query: 531 ALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVN 590
+ +G + + + +SHL FADD ++ + +++ + L F SGL +N
Sbjct: 571 SRYTSGYIAYH--PKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMN 628
Query: 591 FHKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
+K+ L ++ S S++ + G K+ +P YLGL
Sbjct: 629 TNKTQLYHAGLSQS-ESDSMASYGFKLGSLPVRYLGL 664
>gb|AAP44701.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918535|ref|XP_469664.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|40539049|gb|AAR87306.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1014
Score = 275 bits (704), Expect = 4e-72
Identities = 196/625 (31%), Positives = 307/625 (48%), Gaps = 10/625 (1%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF-KGDGRSMR 64
+ GDFN + ++ ++ + + F I L +L L R+FTW + D ++
Sbjct: 75 IMGDFNLIYEARDKNNLNLDRRL--MGRFKAAINRCELRELRLQNRRFTWSNERDAPTLE 132
Query: 65 RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKCWQDMPGYI 124
+LDR + + M++ N A SDHCP+LLS + R W PG++
Sbjct: 133 KLDRIFCNPDGDMLFSNHNLQALSSSNSDHCPLLLSPTHQLLRKPTFRFENFWPRPPGFL 192
Query: 125 DFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDSKG 184
D ++ W + L KLK AL+ W + + + LD
Sbjct: 193 DTVQTAWSQPVSASHPVKRLSSKLKATAKALRSWSNRILSDSRIQFHLVNELILRLDIAQ 252
Query: 185 EEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAARRRL 244
E LS E+ + I L+ + + Q+S L WL++GDAN+KFFH + A R
Sbjct: 253 ENRALSPLEISLRKDLKLQILGLAAVEKARRRQRSTLTWLKEGDANTKFFHLKVNACHRK 312
Query: 245 NSLSSILVDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYLERGGLTKP 304
N + + V+ E + +A+ HF + + RL R + + L + L P
Sbjct: 313 NFIHKLHRGNVIPETHEAKERALHEHFSS-LMGQRLPRSCTLNWEELHLPQVTPEDLDSP 371
Query: 305 FSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHR-NGKLAKGINS 363
F+E+++ A+ + K+PGPDG FF+ W IK+D++ + +FH +G IN
Sbjct: 372 FTEEDVWEAIKRMLAEKAPGPDGFTGTFFRCCWEVIKSDIMELLDKFHSLSGGNFGSINR 431
Query: 364 TFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNRQI 423
+ LIPK ++ ++RPISL+ S+ K+LAKILA RL + I V+S+AQSAF+ R I
Sbjct: 432 ATLILIPKKNDACTMGDYRPISLIHSLAKLLAKILAIRLSRQINKVISQAQSAFIITRCI 491
Query: 424 LDGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKWIKEC 483
D L + + + + K+ L FK+D AKA+DSV W YL ++ M F WR W+
Sbjct: 492 QDNFLYVSNLAKKMHRSKQPTLFFKLDIAKAFDSVSWEYLLTLLEKMGFSTRWRDWVALI 551
Query: 484 VGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRV 543
+ T+++ V +NG + RGLRQGDPLSP+LF+LA L+ L+K D G+ +
Sbjct: 552 LSTSSSRVALNGIEGERIDHHRGLRQGDPLSPYLFILAMDPLHRLLKIATDEGLLSDL-- 609
Query: 544 GRAD-SVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSLVGVNIN 602
AD S +ADDT + S +V +L + L F + +GL VN HKSS++ ++
Sbjct: 610 --ADRSARFRCSLYADDTAIFIKPSRQDVDSLISILNNFGSATGLLVNLHKSSVIPISCG 667
Query: 603 DSWLSEAASVLGCKVVKIPFLYLGL 627
+ L E P YLG+
Sbjct: 668 EIDLDEMLHNFTGPRGTFPMRYLGM 692
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 273 bits (697), Expect = 3e-71
Identities = 188/639 (29%), Positives = 314/639 (48%), Gaps = 23/639 (3%)
Query: 4 VCVCGDFNTVRSVEERRSVRGSQVVDDCTP-FNDFIEDRVLIDLLLSGRKFTWF-KGDGR 61
V + GDFN + E+ + S + C FN FI D L ++ + G KFTW K
Sbjct: 755 VMLGGDFNLYKFASEKSN---SNIDVRCMDMFNKFISDLDLREVHIIGPKFTWTNKQYCP 811
Query: 62 SMRRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGP-RPVRLLKCWQDM 120
+ LDR L+S +W +PN + + LR SDH P+LL E R R W +
Sbjct: 812 TQEVLDRILVSDDWDDRYPNSLISSVLRVGSDHTPLLLDTYELVVEKCRYFRFESAWLAV 871
Query: 121 PGYIDFIREKWVFFQVSGWGGHVLK---EKLKLMKVALKDWHAANTHNLPSKIAELKI*Q 177
G+ D + +K+ G ++L+ +K M+ L W L+
Sbjct: 872 EGFKDLVGKKFPDRD----GSYILEFWNKKQVEMRRFLTGWGINKQSEDRRAKLSLQKKL 927
Query: 178 ASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSV 237
+DSK + +L+ +E + + + + L ++ WL +GD N++++H +
Sbjct: 928 EEIDSKAVDAELNADEWRHRYELEDALEHIYELEELYWHKRCGEQWLLEGDRNTEYYHRI 987
Query: 238 LAARRRLNSLSSILVDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRK----- 292
R++ +++S++ + + + + ++K+ F R E HL
Sbjct: 988 ANGRKKRCTITSLMDGDRELTTKEDLKHHIVEYYKSLF---RSESSSSIHLSQGVWVDSL 1044
Query: 293 -LSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEF 351
L ++ L +PF+ +E+ + + + GPDG ++ F+++FWP+++ DL +
Sbjct: 1045 CLKEEDKNTLMRPFTIEELYKVLREAKPNTAFGPDGFSIPFYRAFWPQLRPDLFEMLLML 1104
Query: 352 HRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVS 411
+ K +N I+LIPK ++P + +FRPI ++ +K ++K + NRL ++ V+S
Sbjct: 1105 YNEELDLKRLNFGVISLIPKNSNPTDIKQFRPICVLNDCFKFISKCVCNRLTEIARDVIS 1164
Query: 412 EAQSAFVKNRQILDGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMS 471
Q+AF+ R IL+G +I + V+ E + ++ K+DF KAYD V W +L EVM
Sbjct: 1165 PTQTAFIPGRFILEGCVIIHEVLHEMNRKNLEGIILKIDFEKAYDKVSWDFLIEVMVRKG 1224
Query: 472 FPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKA 531
FP W WIK CV + +NG TD F RGLRQGDPLSP LF L + L ++ +
Sbjct: 1225 FPSKWVNWIKTCVMGGRVCININGERTDFFRTFRGLRQGDPLSPLLFNLISDALAAMLDS 1284
Query: 532 LVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNF 591
G+ +G V ++HLQ+ADDT+L + A + L FE M+ LKVN+
Sbjct: 1285 AKREGVLSGL-VPDIFPGGITHLQYADDTVLFVANDDKQIVATKFILYCFEEMAVLKVNY 1343
Query: 592 HKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGLSRG 630
HKS + + ++D+ + A + C V + P YLGL G
Sbjct: 1344 HKSEIFTLGLSDNDTNRVAMMFNCPVGQFPMKYLGLPIG 1382
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 272 bits (695), Expect = 5e-71
Identities = 199/639 (31%), Positives = 312/639 (48%), Gaps = 38/639 (5%)
Query: 6 VCGDFNTVRSVEER--------RSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFK 57
+ GDFN + ++ R R V+D C L ++ L RKFTW
Sbjct: 142 ILGDFNMIYRARDKNNSNLNLARMRRFRAVIDRCE----------LHEIPLQNRKFTWSN 191
Query: 58 GDGRS-MRRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKC 116
++ + +LDR + EW + +P+ + A G SDH P++LS + PR +
Sbjct: 192 ERRKATLVKLDRCFCNEEWDLAFPHHVLHALPTGPSDHYPLVLSNPQGPHRPRTFKFENF 251
Query: 117 WQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI* 176
W +PG+ D +++ W H L +KL+ V L+DW T + S+ A+L+
Sbjct: 252 WTRVPGFKDKVKDIWSQPSSHTEPMHRLNQKLQHTAVGLRDW----TKGICSE-AKLQFH 306
Query: 177 QA-----SLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANS 231
A LD E +L+ E + + L+ + + Q SR+ +R+GDAN+
Sbjct: 307 MALNVIQRLDVAQEHRELTPLETRLRAALKRKVLGLASIERARKKQASRVTHIREGDANT 366
Query: 232 KFFHSVLAARRRLNSLSSILVDG--VVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQ 289
KFFH + ARRR N++ + D V G + + HF + F+ RP + +
Sbjct: 367 KFFHLKVNARRRRNTIQRLKKDSGWAVTHGDKEL--TIHDHFAS-FMGRPGPRPNELNWE 423
Query: 290 FRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTD-LVRFV 348
++ ++ L +PF+E+E+ A+ + + K+PGPDG FFK W IK D L+ F
Sbjct: 424 TLDITPIDLATLGEPFTEEEVHKAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFS 483
Query: 349 TEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGS 408
+ ++ +NS I LIPK +S++++RPISL+ S+ KI AK+LA RLR +
Sbjct: 484 SIYNLRCAHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHE 543
Query: 409 VVSEAQSAFVKNRQILDGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMG 468
++S QSAF+K R I D L + + ++ +LLFK+D KA+DSV W YL ++
Sbjct: 544 LISVNQSAFIKGRSIHDNYLFVRNTIRRYHRQRRAMLLFKLDITKAFDSVRWDYLLALLQ 603
Query: 469 SMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVL 528
FP W W+ + ++ + VL+NGSP RGLRQGDPLSP LF+LA L +
Sbjct: 604 RKGFPTRWIDWLGALLSSSISQVLLNGSPGQRIKHGRGLRQGDPLSPLLFILAIDPLQRI 663
Query: 529 MKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLK 588
+ + G + R GR + +S +ADD ++ N + +V L F GL
Sbjct: 664 LSKATELGAISKLR-GRTTRLRIS--MYADDDVIFINPTQNDVATSANILHRFGTAIGLV 720
Query: 589 VNFHKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
N KS + + + L E + K P YLGL
Sbjct: 721 TNLQKSQVAAIRCGNIDLEEVLQGVPAKRANFPLKYLGL 759
Score = 35.8 bits (81), Expect = 7.8
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 4/117 (3%)
Query: 882 VSLQESVTDRWLWVPNHDDGYSVRGVYDMLTSQEQPQLHHNMELIWHK*VPLKVSILAWR 941
V L D+ +W Y+ Y P + N LIW P K AW
Sbjct: 987 VHLDSEEPDQIVWKFTSSGHYTASSAYHA-QCLGAPNTNFN-SLIWKVWAPGKCKFHAWL 1044
Query: 942 LLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALWPMVRAWLG 998
++++R+ T LA RG + C + E HL C +W +V W G
Sbjct: 1045 IIQNRVWTSDRLATRG-WRNNGHCPLCRC-DTETAFHLVAMCRYTKRIWRLVATWAG 1099
>gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor]
Length = 1998
Score = 270 bits (690), Expect = 2e-70
Identities = 185/627 (29%), Positives = 303/627 (47%), Gaps = 7/627 (1%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGDGRSM-R 64
V GDFN +R E+R G + FN I L +++L GRK+TW + +
Sbjct: 945 VVGDFNLMRKHEDRNKEGGDS--SEMFLFNSAISSLGLNEIILQGRKYTWSNMQSNPLLQ 1002
Query: 65 RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKCWQDMPGYI 124
++D S W + + + SDH P L+ V + + R CW +PG+
Sbjct: 1003 KIDWTFTSNSWNIKFLDTSVKGYDMTPSDHAPCLVKVSTKIPKTKVFRFENCWLRLPGFQ 1062
Query: 125 DFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDSKG 184
I + W + K K ++ ALK+ A+ H L + I+++K+ L+
Sbjct: 1063 QIISDVWNVPTHHLDQAKSITAKFKKLRKALKEKQASMAH-LKTVISKVKLVIQFLELLE 1121
Query: 185 EEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAARRRL 244
E LS E + + L Q+ + W++ GDA +KFFH+ + R
Sbjct: 1122 EYRDLSMLEWNFRAILKKKLTELLEQQKIYWRQRGAIKWIKLGDATTKFFHANATIKMRG 1181
Query: 245 NSLSSILV-DGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYLERGGLTK 303
N ++ + DG ++ + Q ++ FK R G+ + S + L +
Sbjct: 1182 NLVNQLQKQDGSILTAHKDKEQHIWEEFKERLGTKEETRFGINPDTILQASN-DLETLEE 1240
Query: 304 PFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLAKGINS 363
PF+E EI++ V + KSPGPDG + F K+ W +K D+ FH + + IN+
Sbjct: 1241 PFTETEIESVVKLLPNDKSPGPDGFSNEFMKASWQTVKVDIFNLCHAFHNHNVCLRSINT 1300
Query: 364 TFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNRQI 423
+FI LIPK +P S+N++RPISL+ + K++ K+LANRL+ I +V + Q F++ R I
Sbjct: 1301 SFITLIPKSHNPVSVNDYRPISLLNTSMKLITKLLANRLQMKITDLVHKNQYGFIRQRTI 1360
Query: 424 LDGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKWIKEC 483
D + + + +K +++ K+DF KA+D ++ + +M + F W W+K
Sbjct: 1361 QDCLAWSFEYLHLCHHSRKAIVIIKLDFEKAFDKMNHKAMLTIMKAKGFGQKWLNWMKSI 1420
Query: 484 VGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRV 543
+ T++VL+NG+P H RG+RQGDPLSP LF+LAA L L+ + +
Sbjct: 1421 FTSGTSNVLLNGTPGKTIHCLRGVRQGDPLSPLLFVLAADFLQSLINKAKCMDLLK-LPI 1479
Query: 544 GRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSLVGVNIND 603
+ +Q+ADDTL+I + L++ + F +GLKVN KS ++ +N+++
Sbjct: 1480 PMQTNQDFPIIQYADDTLIIAEGDTRQLLILKSIINTFSEATGLKVNLQKSMMLPINMDE 1539
Query: 604 SWLSEAASVLGCKVVKIPFLYLGLSRG 630
L A GC PF YLGL G
Sbjct: 1540 ERLDTLARTFGCSKGSFPFTYLGLPLG 1566
Score = 42.4 bits (98), Expect = 0.083
Identities = 31/126 (24%), Positives = 52/126 (40%), Gaps = 4/126 (3%)
Query: 869 EELVEECRALLLTVSLQESVTDRWLWVPNHDDGYSVRGVYDMLTSQEQPQLHHNMELIWH 928
E + + L + E ++ W + +S Y L +Q +H + IW
Sbjct: 1789 ETAFHQLQQLTTRIDNLERTQEQDQWKYKWGNNFSATKAYSELMGHQQ--IHEVHKWIWK 1846
Query: 929 K*VPLKVSILAWRLLRDRLPTKSNLANRGILALEARLCVSGCGNVED-VNHLFLSCVTFS 987
K + W L++DRL T N+ R + L++ CV N E+ +HLFL C
Sbjct: 1847 SFCQPKHKVFFWLLIKDRLST-CNILKRKNMQLQSYNCVLCLQNSEETTSHLFLHCAYAR 1905
Query: 988 ALWPMV 993
W ++
Sbjct: 1906 QCWQLL 1911
>gb|AAX95233.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1018
Score = 269 bits (688), Expect = 3e-70
Identities = 186/624 (29%), Positives = 300/624 (47%), Gaps = 8/624 (1%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF-KGDGRSMR 64
+ GDFN + ++ S R ++ + F ++ + +L L R+FTW +G +
Sbjct: 130 IIGDFNLIYRASDKNSDRLNRRM--MQRFRGLLDKIQVKELQLPVRRFTWAGEGANPTQT 187
Query: 65 RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKCWQDMPGYI 124
++DR ++ +W +++ + SDH P+ L +E+ R W +PG++
Sbjct: 188 KIDRSFVTTDWDLMFESSNLYLLSSACSDHAPLFLVGNEQRSKFPSFRFESFWLKIPGFL 247
Query: 125 DFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDSKG 184
+ +++ W ++ + + KL+ + LK W + ++ ++A LD
Sbjct: 248 EAVQDSWQRPILATNCLAIFRIKLRCLARDLKRWSRSQVGDIKLQLAVASKVVFQLDIAQ 307
Query: 185 EEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAARRRL 244
E LS++E + + I +LS L Q+SR WL++GD NS FFH +RRR
Sbjct: 308 ETRTLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTWLKEGDVNSNFFHIKANSRRRK 367
Query: 245 NSLSSILVDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYLERGGLTKP 304
N + S+ + Q + + FK + R +R + L L+ G L +
Sbjct: 368 NYIQSLHTPSGIAISAQDKEEELLRFFKER-IGSRFQRTSGINWNMMDLPSLDLGDLEED 426
Query: 305 FSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLA-KGINS 363
+E+E+K V+ K+PGPDG FFKS W I DL+ V F L K +NS
Sbjct: 427 ITEEELKKTVFSMPPEKAPGPDGFIGAFFKSAWEIINEDLLSTVRSFFDLNTLQIKDLNS 486
Query: 364 TFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNRQI 423
FI L+PK +RPISL+ S KI++KILANRL + +VS QSAFV+ R I
Sbjct: 487 AFICLLPKKEDALGAEHYRPISLIHSFSKIISKILANRLAPRLCELVSTNQSAFVRKRAI 546
Query: 424 LDGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKWIKEC 483
D + +V + KK L K+D AKA+D+V W YL EV+ F + W WI
Sbjct: 547 HDNFVFVKNMVQYLHRTKKTSLFIKIDIAKAFDTVCWPYLLEVLRQFGFGIRWLNWISNL 606
Query: 484 VGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRV 543
+ T+++ +L+NGS + RGLRQGDPLSP LF+LA + ++KA+ +A + + +
Sbjct: 607 LATSSSQMLLNGSSGQSINHVRGLRQGDPLSPMLFILAMEPFHRIIKAVENASLL--FPM 664
Query: 544 GRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSLVGVNIND 603
G + L + DD + +++ L L F SGL N K+ + + +
Sbjct: 665 GGSFDRFRCSL-YVDDVAVFVKPQASDLSVLMRLLTFFAQTSGLHTNISKTEIYPIRCEN 723
Query: 604 SWLSEAASVLGCKVVKIPFLYLGL 627
L + V + P YLGL
Sbjct: 724 INLVSLLANFPGMVKQFPCRYLGL 747
>gb|AAX95130.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 930
Score = 269 bits (688), Expect = 3e-70
Identities = 186/624 (29%), Positives = 300/624 (47%), Gaps = 8/624 (1%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF-KGDGRSMR 64
+ GDFN + ++ S R ++ + F ++ + +L L R+FTW +G +
Sbjct: 42 IIGDFNLIYRASDKNSDRLNRRM--MQRFRGLLDKIQVKELQLPVRRFTWAGEGANPTQT 99
Query: 65 RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKCWQDMPGYI 124
++DR ++ +W +++ + SDH P+ L +E+ R W +PG++
Sbjct: 100 KIDRSFVTTDWDLMFESSNLYLLSSACSDHAPLFLVGNEQRSKFPSFRFESFWLKIPGFL 159
Query: 125 DFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDSKG 184
+ +++ W ++ + + KL+ + LK W + ++ ++A LD
Sbjct: 160 EAVQDSWQRPILATNCLAIFRIKLRCLARDLKRWSRSQVGDIKLQLAVASKVVFQLDIAQ 219
Query: 185 EEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAARRRL 244
E LS++E + + I +LS L Q+SR WL++GD NS FFH +RRR
Sbjct: 220 ETRTLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTWLKEGDVNSNFFHIKANSRRRK 279
Query: 245 NSLSSILVDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYLERGGLTKP 304
N + S+ + Q + + FK + R +R + L L+ G L +
Sbjct: 280 NYIQSLHTPSGIAISAQDKEEELLRFFKER-IGSRFQRTSGINWNMMDLPSLDLGDLEED 338
Query: 305 FSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLA-KGINS 363
+E+E+K V+ K+PGPDG FFKS W I DL+ V F L K +NS
Sbjct: 339 ITEEELKKTVFSMPPEKAPGPDGFIGAFFKSAWEIINEDLLSTVRSFFDLNTLQIKDLNS 398
Query: 364 TFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNRQI 423
FI L+PK +RPISL+ S KI++KILANRL + +VS QSAFV+ R I
Sbjct: 399 AFICLLPKKEDALGAEHYRPISLIHSFSKIISKILANRLAPRLCELVSTNQSAFVRKRAI 458
Query: 424 LDGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKWIKEC 483
D + +V + KK L K+D AKA+D+V W YL EV+ F + W WI
Sbjct: 459 HDNFVFVKNMVQYLHRTKKTSLFIKIDIAKAFDTVCWPYLLEVLRQFGFGIRWLNWISNL 518
Query: 484 VGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRV 543
+ T+++ +L+NGS + RGLRQGDPLSP LF+LA + ++KA+ +A + + +
Sbjct: 519 LATSSSQMLLNGSSGQSINHVRGLRQGDPLSPMLFILAMEPFHRIIKAVENASLL--FPM 576
Query: 544 GRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSLVGVNIND 603
G + L + DD + +++ L L F SGL N K+ + + +
Sbjct: 577 GGSFDRFRCSL-YVDDVAVFVKPQASDLSVLMRLLTFFAQTSGLHTNISKTEIYPIRCEN 635
Query: 604 SWLSEAASVLGCKVVKIPFLYLGL 627
L + V + P YLGL
Sbjct: 636 INLVSLLANFPGMVKQFPCRYLGL 659
>gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|25403016|pir||D86384
unknown protein [imported] - Arabidopsis thaliana
Length = 1213
Score = 269 bits (687), Expect = 4e-70
Identities = 186/633 (29%), Positives = 311/633 (48%), Gaps = 17/633 (2%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGDGRS--M 63
V GDFN V + +E + V + F D + L DL G FTW+ +
Sbjct: 141 VLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKGNTFTWWNKSHTTPVA 200
Query: 64 RRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENW-GPRPVRLLKCWQDMPG 122
+++DR L++ W ++P+ + + SDH + ++E + RP +
Sbjct: 201 KKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETSIKAKRPFKFFNYLLKNLD 260
Query: 123 YIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDS 182
+++ +R+ W V G + +KLK +K +KD+ N L + E
Sbjct: 261 FLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQD 320
Query: 183 KGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAARR 242
+ + EL H L+ S Q+SR++W +GD N+K+FH + AR
Sbjct: 321 RTLADPTPINASFELEA-ERKWHILTAAEESFFRQKSRISWFAEGDGNTKYFHRMADARN 379
Query: 243 RLNSLSSI------LVDGVVVEGVQPFRQAVFTHFKNHFLDPRL-ERPGVGHLQFRKLSY 295
NS+S++ LVD EG+ + F +DP L E+ + L + S
Sbjct: 380 SSNSISALYDGNGKLVDSQ--EGILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSP 437
Query: 296 LERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNG 355
+ L FS ++I+AA++ KS GPDG FF W + ++ + EF +G
Sbjct: 438 AQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSG 497
Query: 356 KLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQS 415
L K N+T I LIPK+ +P ++FRPIS + ++YK++A++L +RL++++ V+S AQS
Sbjct: 498 CLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQS 557
Query: 416 AFVKNRQILDGILIAN*VVDEARKLK-KYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPV 474
AF+ R + + +L+A +V + KVD KA+DSV W ++ + +++ P
Sbjct: 558 AFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPE 617
Query: 475 VWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVD 534
+ WI +C+ T T +V +NG F +GLRQGDPLSP+LF+LA + L+ + +
Sbjct: 618 KFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYE 677
Query: 535 AGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKS 594
+G+ + +A ++ +SHL FADD ++ + ++ + L F + SGLKVN KS
Sbjct: 678 SGLI--HYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKS 735
Query: 595 SLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
L +N S A + G + +P YLGL
Sbjct: 736 HLYLAGLN-QLESNANAAYGFPIGTLPIRYLGL 767
>gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1556
Score = 268 bits (685), Expect = 7e-70
Identities = 191/632 (30%), Positives = 301/632 (47%), Gaps = 22/632 (3%)
Query: 8 GDFNTVRSVEERRSVRGSQVVDDCTPF--NDFIEDRVLIDLLLSGRKFTWFKG-DGRSMR 64
GDFN +R+ E+ + R +D PF N I+ L ++LLSG KFTW +
Sbjct: 865 GDFNIIRNPMEKNNER----YNDRWPFLFNVVIDSLNLREILLSGCKFTWANSMPNPTYE 920
Query: 65 RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDE-ENWGPRPVRLLKC-WQDMPG 122
+LDR L+S EW P A R LSDH P++L + + +P+ + W
Sbjct: 921 KLDRVLVSTEWETKNPLVTVHALCRDLSDHTPLVLDTGKGTHRNAQPLFKFELGWLLRDD 980
Query: 123 YIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDW----HAANTHNLPSKIAELKI*QA 178
+ + + E W + K++ ++ L+ W A P IA++
Sbjct: 981 FQNLLVEIWSKDIQGATNIERWQNKIRRLRQFLRGWVKNLSGAYKKEKPRLIAKVD---- 1036
Query: 179 SLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVL 238
LD E L+ +EL + + L R + W Q GD N+K++H +
Sbjct: 1037 ELDKLAETRILTSQELDLKNSCKNALAQLLRE-EEVKWYQRAKTKRIVGDRNTKYYHMIT 1095
Query: 239 AARRRLNSLSSILVDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQ---FRKLSY 295
+ R + + + V++G ++ V +++ F P + Q ++S
Sbjct: 1096 NGKHRKTKIFQLEQEEGVIKGDAQLKKYVTNYYRGLFGAPDGNCFSMCESQKDDIPQVSM 1155
Query: 296 LERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNG 355
E LTK F+E+E+K AV+ + K+PGPDG F++ FW IK DL+ +FH
Sbjct: 1156 EENTFLTKEFTEEEVKHAVFQMEHNKAPGPDGFPAEFYQVFWEVIKEDLMAVFRDFHSGE 1215
Query: 356 KLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQS 415
+N I L+PK + + ++R I L+ +K+ K++ANR+ V V+ +Q
Sbjct: 1216 LPLHRLNFGIITLLPKNKEAKQIQQYRRICLLNVSFKVFTKVMANRIALVAQKVIRPSQI 1275
Query: 416 AFVKNRQILDGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPVV 475
AF+K R I++G +I + + E K K ++ K+DF KAYD V+W +L + + F +
Sbjct: 1276 AFLKGRNIIEGAIILHETLHEMHKKKSNGVILKLDFEKAYDKVNWNFLQQALRMKGFSDI 1335
Query: 476 WRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDA 535
W KWI + V + +V VN F ++GLRQGDPLSP LF L A L +L+ D
Sbjct: 1336 WCKWIDQVVSGGSVAVKVNDEIGHFFQTKKGLRQGDPLSPILFNLVADMLAILINRARDL 1395
Query: 536 GMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSS 595
G D+ +S LQ+ADDT+L + L+ L FE +SGLK+NFHKS
Sbjct: 1396 ETLNGVIPQLVDN-GLSILQYADDTILFMDHDLVKANNLKLVLAAFERLSGLKINFHKSE 1454
Query: 596 LVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
+ + ++ GCK+ PF YLGL
Sbjct: 1455 MFCFGKAKEVEKDYTTLFGCKMGTFPFRYLGL 1486
>gb|AAP53623.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534068|ref|NP_921336.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|19881727|gb|AAM01128.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1228
Score = 268 bits (684), Expect = 9e-70
Identities = 184/588 (31%), Positives = 282/588 (47%), Gaps = 51/588 (8%)
Query: 1 NNKVCVCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF-KGD 59
++ V + GDFN R E+ + + D FN FI + L ++ SG KFTW K D
Sbjct: 650 SHHVVIGGDFNLYRFASEKSNTNTNSRNMDM--FNSFIANLDLREIYRSGPKFTWTNKQD 707
Query: 60 GRSMRRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDE------------ENW- 106
LDR L++ +W ++P + + LR SDH P+LL E W
Sbjct: 708 SLVQEVLDRILVTTDWDDMYPTALLSSILRVGSDHIPLLLDTCEGIIVKSKYFKFESAWL 767
Query: 107 GPRPVRLLKCWQDMPGYIDFIREKWVFFQVS------GWGGHVLKEKLKLMKVALKDWHA 160
+ L + +P +I E W Q S GWG + +KL+
Sbjct: 768 AEESFKELVIQRLLPRDNSYILEFWNKKQSSLRRFLVGWGKNNRSKKLR----------- 816
Query: 161 ANTHNLPSKIAELKI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSR 220
L KI EL D K E+L+ +E + + D+ + + ++
Sbjct: 817 -EKRTLQCKIEEL-------DKKALTEELTSDEWNQRYSWENDLEHIYEMEELYWHKRCG 868
Query: 221 LNWLRDGDANSKFFHSVLAARRRLNSLSSILVDGVVVEGVQPFRQAVFTHFKNHFLDPRL 280
W+ +GD N++FFH V R+R ++S++ + R+ + ++K F D
Sbjct: 869 EQWILEGDRNTEFFHRVANGRKRKCHITSLMDGETELTSKSEIREHIVEYYKTLFRDVPT 928
Query: 281 ER----PGV--GHLQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFK 334
GV HL LS + LT+PF E+ + + +PGPDG ++ F++
Sbjct: 929 ANIHLSQGVWTNHLN---LSDASKENLTRPFVMAELDKVINEAKLNTAPGPDGFSIPFYR 985
Query: 335 SFWPEIKTDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKIL 394
+FWP++K DL + H K +N I+LIPK +P + +FRPI ++ +K L
Sbjct: 986 AFWPQVKNDLFEMLLMLHNEDLDLKRLNFGVISLIPKNNNPTDIKQFRPICVLNDCFKFL 1045
Query: 395 AKILANRLRQVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEARKLKKYLLLFKVDFAKA 454
+K++ NRL +V VVS+ Q+AF+ R IL+G +I + V+ E + ++ K+DF KA
Sbjct: 1046 SKVVTNRLTEVADEVVSQTQTAFIPGRFILEGCVIIHEVLHELKSKNSEGIILKIDFEKA 1105
Query: 455 YDSVDWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLS 514
YD V+W +L EVM +FP W WIK CV + +NG TD F RGLRQGDPLS
Sbjct: 1106 YDKVNWEFLIEVMERKNFPKKWISWIKSCVMGGRVCININGERTDFFRTFRGLRQGDPLS 1165
Query: 515 PFLFLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLL 562
P LF L + L + + AG+ G V ++HLQ+ADDT+L
Sbjct: 1166 PLLFNLVSDALAAMFDSAKAAGVLCGL-VPNIFPGGITHLQYADDTVL 1212
>gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 266 bits (680), Expect = 3e-69
Identities = 190/638 (29%), Positives = 312/638 (48%), Gaps = 27/638 (4%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGDGRS--M 63
+ GDFN + S GS++ F + + + DL G +TW+ +
Sbjct: 140 ILGDFNQSLDPVDA-STGGSRITRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIA 198
Query: 64 RRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGP-RPVRLLKCWQDMPG 122
+++DR L++ W + P SDHCP +++ ++ G +P +L P
Sbjct: 199 KKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPE 258
Query: 123 YIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDS 182
+I+ IR W G L +K K +K ++ ++ + L ++ QA+ +
Sbjct: 259 FIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVV-----QAAQNL 313
Query: 183 KGEEEQLSEEELGELHGISTDIH----SLSRLITSICWQQSRLNWLRDGDANSKFFHSVL 238
K + L L G+ + H L+ Q+SR+ WL+ GD+N+ FFH ++
Sbjct: 314 KTCQNNLLAAPSSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMM 373
Query: 239 AARRRLNSLSSILVD-GVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYLE 297
ARR +N + +L G +E + FK F G Q L+ +
Sbjct: 374 TARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFK 433
Query: 298 -----RGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFH 352
R L SE +IK+ + S KSPGPDG FFK W + L+ V EF
Sbjct: 434 CDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFF 493
Query: 353 RNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSE 412
R+G+L NST + ++PK + + EFRPIS ++YK+++K+LA RL ++ +S
Sbjct: 494 RSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISP 553
Query: 413 AQSAFVKNRQILDGILIAN*VVD---EARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGS 469
+QSAFVK R + + +L+A +V +A + +L KVD KA+DSV WG++ E + +
Sbjct: 554 SQSAFVKGRLLTENVLLATELVQGFGQANISSRGVL--KVDLRKAFDSVGWGFIIETLKA 611
Query: 470 MSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLM 529
+ P + WIK+C+ + + S+ V+GS F +GLRQGDPLSP LF++A L+ L+
Sbjct: 612 ANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLL 671
Query: 530 KALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKV 589
+ G GY +A V +S L FADD ++ + +++R +++ L F+ +SGL++
Sbjct: 672 ENKFSDGSI-GYH-PKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEM 729
Query: 590 NFHKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
N KS++ + D+ E G PF YLGL
Sbjct: 730 NTEKSAVYTAGLEDT-DKEDTLAFGFVNGTFPFRYLGL 766
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 265 bits (678), Expect = 5e-69
Identities = 185/635 (29%), Positives = 314/635 (49%), Gaps = 31/635 (4%)
Query: 8 GDFNTVRSVEERRSVRG-SQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF--KGDGRSMR 64
GDFN + V+ + G ++ C F + L ++ SG +F+W+ + D
Sbjct: 135 GDFNEL--VDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNRNDELVQC 192
Query: 65 RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGP-RPVRLLKCWQDMPGY 123
RLDR + + W ++P + SDH P++ ++ +NW + K W G+
Sbjct: 193 RLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGFKYDKRWVQREGF 252
Query: 124 IDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDSK 183
D + W Q S ++ EK+ + + W + + +I EL Q LD+
Sbjct: 253 KDLLCNFWS--QQSTKTNALMMEKIASCRREISKWKRVSKPSSAVRIQEL---QFKLDAA 307
Query: 184 GEEEQLSEEELGELHG-ISTDIHSLSRLITSICWQQ-SRLNWLRDGDANSKFFHSVLAAR 241
++ EL L +S + ++ + WQ+ SR+ W+R+GD N+K+FH+ R
Sbjct: 308 TKQIPFDRRELARLKKELSQEYNNEEQF-----WQEKSRIMWMRNGDRNTKYFHAATKNR 362
Query: 242 RRLNSLSSIL-VDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYLE--- 297
R N + ++ +G + + +FK F E G + L+ L
Sbjct: 363 RAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFAS---EDVGYTVEELENLTPLVSDQ 419
Query: 298 -RGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGK 356
L P +++E++ A + + K PGPDG+N ++ FW + + V F R+G
Sbjct: 420 MNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGS 479
Query: 357 LAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSA 416
+ +G+N T I LIPK+ + + +FRPISL +YK++ K++ANRL++++ S++SE Q+A
Sbjct: 480 IEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAA 539
Query: 417 FVKNRQILDGILIAN*V---VDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFP 473
FVK R I D ILIA+ + + K + + K D +KAYD V+W +L++ M + F
Sbjct: 540 FVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFA 599
Query: 474 VVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALV 533
W + I ECV + VL+NG+P E RGLRQGDPLSP+LF++ L ++++
Sbjct: 600 DHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAE 659
Query: 534 DAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHK 593
TG +V R + +SHL FADD++ + + + + + SG +VN+ K
Sbjct: 660 QKNQITGLKVARG-APPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLK 718
Query: 594 SSL-VGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
SS+ G +I++ LG + +YLGL
Sbjct: 719 SSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGL 753
Score = 47.0 bits (110), Expect = 0.003
Identities = 35/111 (31%), Positives = 47/111 (41%), Gaps = 12/111 (10%)
Query: 890 DRWLWVPNHDDGYSVRGVYDMLTS--------QE--QPQLHHNMELIWHK*VPLKVSILA 939
DR+ W + YSV+ Y ++T QE QP L + IW VP K+
Sbjct: 1008 DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFL 1067
Query: 940 WRLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALW 990
WR + + L SNLA R + + CV + E VNHL C W
Sbjct: 1068 WRCVNNCLSVASNLAYRHL--AREKSCVRCPSHGETVNHLLFKCPFARLTW 1116
>emb|CAD41368.2| OSJNBa0088A01.7 [Oryza sativa (japonica cultivar-group)]
gi|50928243|ref|XP_473649.1| OSJNBa0088A01.7 [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 265 bits (677), Expect = 6e-69
Identities = 196/638 (30%), Positives = 295/638 (45%), Gaps = 40/638 (6%)
Query: 8 GDFNTV--------RSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGD 59
GDFN + ++ RR R ++ C L ++ L RKFTW
Sbjct: 596 GDFNMIYRACDKSNSNINLRRMRRFRAAINHCE----------LKEIHLQNRKFTWTNER 645
Query: 60 GR-SMRRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKCWQ 118
+M RLDRF + W + + + I G SDHCP+LLS + PR + W
Sbjct: 646 RHPTMVRLDRFFCNENWDLAFGHHILHTLSSGTSDHCPLLLSNPQGPQRPRTFKFENFWT 705
Query: 119 DMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QA 178
+PG+ ++ W H L +KL +ALK W + K
Sbjct: 706 KLPGFRTEVQLAWERTSTHHEPLHRLADKLSHTALALKKWARGICSEVKLKFHLALDVIQ 765
Query: 179 SLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVL 238
LD E L++ E G+ + + + + Q SR+ +++GDAN+K+FH +
Sbjct: 766 RLDVAQENRDLTQAEFRLRLGLKRRLLGYAAIERARKKQASRITNIKEGDANTKYFHRKV 825
Query: 239 AARRRLNSLSSI------LVDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRK 292
AR+R N + + V EGV + HF+ P P L +
Sbjct: 826 NARKRRNHIFRLRRQNGWAVTHAEKEGV------IADHFRQVMGRPE---PRTSDLNWPS 876
Query: 293 LSYL--ERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTE 350
L + L +PFSE EI+ A+ + K+PGPDG FFKS W I+ D++
Sbjct: 877 LDLAPTDLTRLEEPFSEAEIRKAINEMPGDKAPGPDGFTGKFFKSCWDIIQVDVIAAFNA 936
Query: 351 FHRNGKLAKGI-NSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSV 409
H + + NS + LIPK + +N+FRPISL+ K+ +K+LA RLR ++ S+
Sbjct: 937 LHNMRSVHLNLLNSANVVLIPKKDGAEGINDFRPISLIHGFAKLSSKVLAIRLRPLMQSL 996
Query: 410 VSEAQSAFVKNRQILDGILIAN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGS 469
+S QSAF++ R I D + +V K ++ +LLFK+D +KA+DSV W YL ++ +
Sbjct: 997 ISPNQSAFIRGRSIHDNFMYVRNMVRRYHKTRRPILLFKLDISKAFDSVRWDYLLALLQN 1056
Query: 470 MSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLM 529
P WR WI + T+T+ + +NG P + +GLRQGDP+SP LF+LA L L+
Sbjct: 1057 RGLPQKWRDWISGLLSTSTSKITLNGIPGETIRHWKGLRQGDPISPLLFILAIDPLQRLL 1116
Query: 530 KALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKV 589
D G+ + R GRA S +ADD + N + +V A L F +SGL
Sbjct: 1117 DKATDIGILSKLR-GRAVRFRTS--MYADDAAVFINPTKEDVSAFADLLNRFGKVSGLCT 1173
Query: 590 NFHKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
N KS + V ++ L + P YLGL
Sbjct: 1174 NLQKSQVAPVRCDNLDLDDILHDTPATRASFPMKYLGL 1211
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 263 bits (672), Expect = 2e-68
Identities = 189/607 (31%), Positives = 294/607 (48%), Gaps = 29/607 (4%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF-KGDG-RSM 63
V GDFN E S + + F D + D L DL G T+ + DG R++
Sbjct: 682 VIGDFNETLWQFEHFS-KNPRCETQMQNFRDALYDCDLQDLGFKGVPHTYDNRRDGWRNV 740
Query: 64 R-RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLS-VDEENWGPRPVRLLKC----- 116
+ RLDR + +W ++P + SDH PILL + ++ PR KC
Sbjct: 741 KVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTRPRQ----KCLHYEI 796
Query: 117 -WQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI 175
W+ P + I E W+ V G + ++M AL+ W N+ ++ + +
Sbjct: 797 VWEREPESVQVIEEAWINAGVKTDLGDINIALGRVMS-ALRSWGKTKVKNVGRELEKAR- 854
Query: 176 *QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFH 235
K E+ S + + ++ + + Q+SR+NWL++GD N++FFH
Sbjct: 855 ------KKLEDLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTRFFH 908
Query: 236 SVLAARRRLNSLSSILVDGVVVEGVQPFRQAVFTHF--KNHFLDPRLERPGVGHLQFRKL 293
S R + N +S + + + + + + T + + + DP L V L K+
Sbjct: 909 SRAVWRAKKNKISKLRDENGAIHSMTSVLETMATEYFQEVYKADPSLNPESVTRLFQEKV 968
Query: 294 SYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHR 353
+ L + F E+EI A++ KSPGPDG F++ W +K+D++ V F +
Sbjct: 969 TDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQ 1028
Query: 354 NGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEA 413
+G + +G+N T I LIPK P L ++RPISL +YK+++K L NRLR ++ +VS+
Sbjct: 1029 SGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKE 1088
Query: 414 QSAFVKNRQILDGILIAN*VVDEARKLKK---YLLLFKVDFAKAYDSVDWGYLDEVMGSM 470
QSAF++ R I D L+A +K KK +K+D +KAYD VDW +L+ + +
Sbjct: 1089 QSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKL 1148
Query: 471 SFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMK 530
F W WI CV T SV NG+ F RGLRQGDPLSPFLFL A GL++L+K
Sbjct: 1149 GFAHRWVSWIMSCVTTVRYSVKFNGTLLRSFAPTRGLRQGDPLSPFLFLFVADGLSLLLK 1208
Query: 531 ALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVN 590
V T ++ + +SHL FADDTLL ++ L + +G +N
Sbjct: 1209 EKVAQNSLTPLKI-CCQAPGISHLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLIN 1267
Query: 591 FHKSSLV 597
K S++
Sbjct: 1268 PAKCSIL 1274
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 263 bits (671), Expect = 3e-68
Identities = 182/642 (28%), Positives = 324/642 (50%), Gaps = 39/642 (6%)
Query: 8 GDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF-KGDGRSM-RR 65
GDFN V +E + + F + + L DL+ G FTW+ K R + ++
Sbjct: 3 GDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKK 62
Query: 66 LDRFLLSVEWCMVWPNCIQVAQLRGLSDH--CPILLSVDEENWGPRPVRLLKCWQDMPGY 123
LDR L + WC ++P+ + SDH C ++L + + RP + +
Sbjct: 63 LDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGIS-AKRPFKFFNFLLKNEDF 121
Query: 124 IDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAAN----------THNLPSKIAEL 173
++ + + W V G + + +KLK MK +KD+ N H L L
Sbjct: 122 LNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQNL 181
Query: 174 KI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKF 233
+ S+ + E + + + LS S Q+SR++W +GD+N+ +
Sbjct: 182 TLANPSVSNAALELEAQRKWV-----------LLSCAEESFFHQRSRVSWFAEGDSNTHY 230
Query: 234 FHSVLAARRRLNSLSSIL-VDGVVVEGVQPFRQAVFTHFKN---HFLDP-RLERPGVGHL 288
FH ++ +R+ N+++S++ +G++++ Q T+++ P +E+ + L
Sbjct: 231 FHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLL 290
Query: 289 QFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFV 348
+ S + L K F++DEIKAA K+ GPDG ++ FF+ W I +++ +
Sbjct: 291 LTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAI 350
Query: 349 TEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGS 408
EF +G+L K N+T + LIPK ++ +++EFRPIS + ++YK+++K+L +RL+ ++ +
Sbjct: 351 HEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSA 410
Query: 409 VVSEAQSAFVKNRQILDGILIAN*VVDEARKLK-KYLLLFKVDFAKAYDSVDWGYLDEVM 467
V+ +QSAF+ R + + +L+A +V +L + KVD KA+DSV W ++ +
Sbjct: 411 VIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAAL 470
Query: 468 GSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNV 527
+++ P + WI +C+ T + ++ VNG+ F +GLRQGDPLSP+LF+LA +
Sbjct: 471 RALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSK 530
Query: 528 LMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGL 587
L+ + D+G + +A + +SHL FADD ++ + +++ + L F SGL
Sbjct: 531 LLYSRYDSGYI--HYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGL 588
Query: 588 KVNFHKSSLVGVNINDSWLSE--AASVLGCKVVKIPFLYLGL 627
KVN KS L ++ LSE ++ G P YLGL
Sbjct: 589 KVNKDKSQLFQAGLD---LSERITSAAYGFPAGTFPIRYLGL 627
Score = 35.8 bits (81), Expect = 7.8
Identities = 28/108 (25%), Positives = 50/108 (45%), Gaps = 6/108 (5%)
Query: 888 VTDRWLWVPNHDD--GYSVRGVYDMLTSQEQPQLHHNMELIWHK*VPLKVSILAWRLLRD 945
V+D + W + D G+S +++L + + + +W K K + W +
Sbjct: 876 VSDSYSWCVDDVDCQGFSAAKTWEVLRPRRP--VKRWAKSVWFKGAVPKHAFNFWTAQLN 933
Query: 946 RLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALWPMV 993
RLPT+ L + G+++ A C+ + E +HL L C S +W MV
Sbjct: 934 RLPTRQRLVSWGLVS-SAECCLCSF-DTETRDHLLLLCDFSSQVWRMV 979
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.338 0.149 0.505
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,716,927,004
Number of Sequences: 2540612
Number of extensions: 70728856
Number of successful extensions: 207061
Number of sequences better than 10.0: 1162
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 403
Number of HSP's that attempted gapping in prelim test: 204157
Number of HSP's gapped (non-prelim): 1678
length of query: 1050
length of database: 863,360,394
effective HSP length: 138
effective length of query: 912
effective length of database: 512,755,938
effective search space: 467633415456
effective search space used: 467633415456
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 81 (35.8 bits)
Medicago: description of AC135604.8