BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135566.1 + phase: 0 /pseudo
(437 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 150 6e-35
dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera] 121 5e-26
emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum] 111 4e-23
gb|AAV44132.1| putative polyprotein [Oryza sativa (japonica cult... 107 7e-22
gb|AAP54365.1| putative gag-pol precursor [Oryza sativa (japonic... 103 1e-20
gb|AAK50400.1| Putative retroelement [Oryza sativa] 102 2e-20
ref|NP_912595.1| putative polyprotein [Oryza sativa (japonica cu... 102 3e-20
ref|XP_474016.1| OSJNBa0043L09.12 [Oryza sativa (japonica cultiv... 100 9e-20
ref|XP_471080.1| OSJNBb0089K24.6 [Oryza sativa (japonica cultiva... 100 9e-20
gb|AAT77397.1| putative polyprotein [Oryza sativa (japonica cult... 100 1e-19
ref|XP_474849.1| OSJNBa0035O13.7 [Oryza sativa (japonica cultiva... 100 2e-19
ref|XP_468909.1| putative polyprotein [Oryza sativa (japonica cu... 100 2e-19
gb|AAT77333.1| putative polyprotein [Oryza sativa (japonica cult... 100 2e-19
gb|AAR00629.1| putative reverse transcriptase [Oryza sativa (jap... 99 2e-19
gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cul... 99 2e-19
gb|AAP54915.1| putative gag-pol precursor [Oryza sativa (japonic... 99 3e-19
gb|AAX96254.1| transposon protein, putative, unclassified [Oryza... 99 3e-19
gb|AAX96740.1| retrotransposon protein, putative, Ty3-gypsy sub-... 99 3e-19
gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cul... 99 3e-19
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 99 3e-19
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 150 bits (380), Expect = 6e-35
Identities = 113/437 (25%), Positives = 198/437 (44%), Gaps = 77/437 (17%)
Query: 22 IQQVQQQEKTDSHHGDLDEPEPQPFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFN 81
+Q +Q K + + ++ P+ PF+ I P+PD ++ + +DG DP EH+ +F
Sbjct: 189 VQHTRQSAKPVTPN-EVANPKGHPFTDDIIATPLPDKWRGLTINLYDGSTDPDEHLNIFR 247
Query: 82 TRMSVYGVADSLKCKLLAGTFADAALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVL 141
T+M++Y ++ CK+ + + L W+ LP SI + + KFT Q++ +R +
Sbjct: 248 TQMTLYTTDRTVWCKVFPTSLREGPLGWFSDLPPNSIASFDALELKFTTQYATSRPHRTS 307
Query: 142 STSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPAD 201
S SL NV+Q ESLR ++ RF+ + + N N E+ + + + G+F ES+ ++P
Sbjct: 308 SMSLLNVKQERGESLRTFMNRFSKVCMNIRNLNPEIAMHHLVSAILPGRFTESLIKRPPC 367
Query: 202 SMEEIIARAECYVKGEESNAEKKAREAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQN 261
+M+E+ RA +++ EE + A+ NS G R PP T ER++
Sbjct: 368 NMDELRTRATKFMQIEEHIDYHRKTYAENTDNSKGIR-----PP-----TIPTDRERHRP 417
Query: 262 RYVP--EHFTPLNTRPERILKEVFESKIIPPPPFSRARVMGQDKDAWCKYHLVQGHNTDD 319
P ++TPL ++L E + ++IP S+ D C+YH GH T+
Sbjct: 418 NRGPRFHNYTPLIVPRGKVLDEALQIELIPTLRPSQT-PPNADTSKRCQYHRNYGHTTEG 476
Query: 320 CVHLKREIEKLLLSGKLRGYAK---------ERRHNERQED------------------- 351
C LK +IE+L+ +G LR + K +R H+ R+
Sbjct: 477 CQALKDKIEELVQAGHLRKFVKTTITAPRSPQRDHDPRERSGRRDDRTRDNHYRSSRRKR 536
Query: 352 -----------KPNPEQK------------------------HTLHTISGGFAGGGESSN 376
+PE++ ++ I+GGFAGGG S++
Sbjct: 537 SESPIRRTRPKSESPERRSRTKQKVRTVINTIAGPVSLGQPPQEINYIAGGFAGGGCSNS 596
Query: 377 SMKKYARQVMLLGDGPS 393
+ KK+ R + + P+
Sbjct: 597 ARKKHLRAIQSVHSTPT 613
>dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera]
Length = 549
Score = 121 bits (303), Expect = 5e-26
Identities = 88/335 (26%), Positives = 153/335 (45%), Gaps = 18/335 (5%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
PF + I N P F P T+DG DP +H+ + M++ D+L CK+ +
Sbjct: 5 PFCSHIINYEPPRGFLVPKFSTYDGTSDPFDHIMHYRQLMTLDIGNDALLCKVFPASLQG 64
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQF-SGTRHRKVLSTSLFNVRQGPSESLREYLARF 163
AL W+ LP S+ ++D+ + F Q+ RH++ +ST L N++ +ESLRE++ RF
Sbjct: 65 QALSWFHRLPPNSVGNFRDLSEAFVGQYLCSARHKQNIST-LQNIKMQDNESLREFVKRF 123
Query: 164 NDSTIKVSNPNQEVFVGAFQNGLWAG-QFNESIAQKPADSMEEIIARAECYVKGEESNAE 222
+ ++V + + + F+ + G F ES+A+KP +M+++ RA Y E+
Sbjct: 124 GQAVLQVEACSMDAVLQIFKRSICPGTPFFESLAKKPPTTMDDLFRRANKYSMLEDDVRA 183
Query: 223 KKAREAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQ---NRYVPEHFTPLNTRPERIL 279
+ SG + PP+R KP +R Q +R TPL+ E++L
Sbjct: 184 ATQQVLVAGRPSGSNTERNTKPPDR-----PKPSDRRQEGPSRPKMPPLTPLSISYEKLL 238
Query: 280 KEVFESKIIPPPPFSRARVMGQDKDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGY 339
+ P +D+ C +H GH T+ C + +E+L+ +G L+ Y
Sbjct: 239 PMIQGLSDFKWPRPIATDPSTRDRSRRCAFHKDHGHTTETCRSFQYLVERLIKAGHLKQY 298
Query: 340 AKE-------RRHNERQEDKPNPEQKHTLHTISGG 367
+ +HN + K ++ I+GG
Sbjct: 299 LRTDTGGRDVSQHNNPGAPRAPVATKAVINYINGG 333
>emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum]
Length = 1455
Score = 111 bits (278), Expect = 4e-23
Identities = 95/365 (26%), Positives = 156/365 (42%), Gaps = 26/365 (7%)
Query: 9 LEQNEALLASVETIQQVQQQEKTDSHHGDLDEPEP-QPFSAKIWNAPVPDNFKPPHLPTF 67
++ N ++ T + + Q G +E E PF+ I +P + + + +
Sbjct: 119 MDNNNQQFINMVTELKREVQALNRDRDGTAEEDEMGSPFAPHILAPEIPVSMRLSNPVVY 178
Query: 68 DG---RGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPCFSIMGYQDM 124
G DP +H+ F M + D C + T A W+ LP SI + ++
Sbjct: 179 TGDRNARDPRDHINQFLAVMDILSTPDHALCWIFRSTLTGRAQAWFSQLPRGSIRSFDEL 238
Query: 125 IKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEVFVGAFQN 184
+ F +QF+ R L + + ESLREY+ RF ++ I V + +
Sbjct: 239 RELFVRQFACNRRYPKTIGHLMTMVEAEGESLREYMRRFANTVIDVRHVGPHILSEFVAQ 298
Query: 185 GLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSGGERRNHYVP 244
G + +F S+ +PA S+EE++ RAE Y+ E++ K G G E R+
Sbjct: 299 GTRSVEFANSLVGRPARSLEELMHRAERYMLQEDTRLAK-------LGIQGHEDRSR--- 348
Query: 245 PNRDRGTFKKPYERNQNRYV-PEHFTPLNTRPERILKEVFESKIIPPPPFSRARVMGQDK 303
NR RG + RY+ P TPL ++ + ++ + PP +R +
Sbjct: 349 -NR-RGDNTHGRQDMVRRYLEPLPLTPLKISNTEVMNIMGGNQDLRCPPQARNFEAMRHT 406
Query: 304 DAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGYAK--------ERRHNERQEDKPNP 355
WC +H GH T++ LK EIE+LL G LR + K ER R+E +P
Sbjct: 407 GKWCLFHRSWGHRTENYDQLKIEIERLLKLGYLRRFIKRMEVYPRNERPGERREESRPRE 466
Query: 356 E-QKH 359
+ Q+H
Sbjct: 467 QAQEH 471
>gb|AAV44132.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1185
Score = 107 bits (267), Expect = 7e-22
Identities = 88/359 (24%), Positives = 145/359 (39%), Gaps = 32/359 (8%)
Query: 32 DSHHGDLDEPEPQPFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVAD 91
D H + F+ + + P+ F+P + +DG DP E + V++T G D
Sbjct: 296 DRQHPTAPSAGCRAFNRSLRDVRWPERFRPGAIEKYDGSTDPEEFLQVYSTVPYAAGADD 355
Query: 92 SLKCKLLAGTFADAALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQG 151
+ L +A W M LP +SI + D+ ++F F GT R ++ L + Q
Sbjct: 356 NALANYLPTALKGSARSWLMHLPPYSISSWADLWQQFVGNFQGTYKRHMIEDDLHALTQN 415
Query: 152 PSESLREYLARFNDSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAE 211
P ESLR+Y+ RFND + + AF+ G+ +A + + +
Sbjct: 416 PGESLRDYVRRFNDCRNTIPEITDASVIRAFKTGVRDRYTTLELATRQITTTRRLFE--- 472
Query: 212 CYVKGEESNAEKKAREAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPL 271
V ++A+ R ++ +GGE++ P +D +P ++ +
Sbjct: 473 --VVDRCAHADDALRRKNDKPKAGGEKK-----PAKDA---PEPSKKKSGK--------- 513
Query: 272 NTRPERILKEVFESKIIPPPPFSRARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKL 330
+ + EVF S+ PP G D K WC H H+ +DC+ K+ +EK
Sbjct: 514 -SGKRKAQAEVFASEYERPP--KHPDPQGSDTKRIWCPIHKSDRHSLEDCLIFKKSLEKQ 570
Query: 331 LLSGK---LRGYAKERRHNERQEDKPNPEQK-HTLHTISGGFAGGGESSNSMKKYARQV 385
L+ K +R K + D P+ H LH G A S KK R+V
Sbjct: 571 LVLKKGKQVRVVEKAVEATTQDSDSAYPDSDLHVLHIFGGSTA--YSSKREYKKVEREV 627
>gb|AAP54365.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37535552|ref|NP_922078.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|16905190|gb|AAL31060.1| putative gag-pol precursor
[Oryza sativa]
Length = 698
Score = 103 bits (257), Expect = 1e-20
Identities = 82/340 (24%), Positives = 134/340 (39%), Gaps = 30/340 (8%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 212 PERFRPGAIKKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPP 271
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + Q ESLREY+ FN+ +
Sbjct: 272 YSISSWADLWQQFIANFQGTYKRHAIEDDLHALTQNSGESLREYVRHFNECRNTIPEITD 331
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E + ++A R ++ +G
Sbjct: 332 ASVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----QCAHANDALRRKNDKPKTG 386
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE++ P + KK +N R + E + E P P S
Sbjct: 387 GEKK----PATDTSESSKKKNRKNGKR---------KAQAEVLAAEYANPPKRPDPQSSN 433
Query: 296 ARVMGQDKDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGK---LRGYAKERRHNERQEDK 352
K +WC H H+ +DC+ K+ +EK + K +R K + D
Sbjct: 434 T------KKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRVRVVEKNEETAPHELDS 487
Query: 353 PNPEQK-HTLHTISGGFAGGGESSNSMKKYARQVMLLGDG 391
P+ H H SG S KK R+V L G
Sbjct: 488 AYPDYDFHVSHIFSGSTT--YSSKREYKKVEREVYLTWQG 525
>gb|AAK50400.1| Putative retroelement [Oryza sativa]
Length = 1291
Score = 102 bits (255), Expect = 2e-20
Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 26/341 (7%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S I P+P FK P +P + G DP E ++++ + + ++ K K++
Sbjct: 49 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDG 108
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
A WY +LP SI ++ + F F GT L +RQ P ES+REY+ RF+
Sbjct: 109 IARSWYFNLPDNSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 168
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKK 224
+ +V + + + A GL G+ IA K ++E ++ + + +GEE + ++
Sbjct: 169 QARCQVQDITEASVINAASAGLLEGELTRKIANKEPLTLEHLLCIIDGFARGEEDSKRRQ 228
Query: 225 AREAK-ERGNSGGERRNHYV----PPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERIL 279
A +A+ ++ + + V PP + + R T R +R
Sbjct: 229 AIQAEYDKASITAAQAQAQVQVAEPPPLSVRQSQPAIQGQPPRQSQAPITWRKFRTDRAG 288
Query: 280 KEVFESKII---------------PPPPFSRARVMGQDKDAWCKYHLVQGHNTDDCVHLK 324
K V + + P + R KD +C +H H T+ C ++
Sbjct: 289 KAVMAVEEVQALRKEFDAQQASNHQQPAHKKVR-----KDLYCAFHGRSSHTTEQCRNI- 342
Query: 325 REIEKLLLSGKLRGYAKERRHNERQEDKPNPEQKHTLHTIS 365
R+ +G E QE P EQ+ +H +S
Sbjct: 343 RQRGNAQNPRPQQGTTVEAPREAVQEQTPPAEQRQDVHQLS 383
>ref|NP_912595.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|13486715|dbj|BAB39950.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1579
Score = 102 bits (253), Expect = 3e-20
Identities = 51/185 (27%), Positives = 92/185 (49%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S I P+P FK P +P + G DP E ++++ + + ++ K K++ T
Sbjct: 49 PLSGGIKTRPIPPQFKFPPVPCYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLTLDG 108
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
A WY +LP SI ++ + F F GT L +RQ P ES+REY+ RF+
Sbjct: 109 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 168
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKK 224
+ +V + + + A GL G+ IA K ++++++ + + +GEE + ++
Sbjct: 169 QARCQVQDITEASVINAASAGLLEGELTRKIANKEPQTLKQLLRIIDGFARGEEDSKRRQ 228
Query: 225 AREAK 229
A +A+
Sbjct: 229 AIQAE 233
>ref|XP_474016.1| OSJNBa0043L09.12 [Oryza sativa (japonica cultivar-group)]
gi|38344792|emb|CAE02993.2| OSJNBa0043L09.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1120
Score = 100 bits (249), Expect = 9e-20
Identities = 70/281 (24%), Positives = 117/281 (40%), Gaps = 24/281 (8%)
Query: 55 VPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLP 114
+ DN PP L +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 276 IADNPPPPALEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLP 335
Query: 115 CFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPN 174
+SI + D+ ++F F GT R + L + Q ESLREY+ FN+ +
Sbjct: 336 PYSISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVQCFNECKNTIPEIT 395
Query: 175 QEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNS 234
+ AF++G+ + +A + + + E ++A+ R ++ +
Sbjct: 396 DASVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----RCAHADDALRRKNDKPKT 450
Query: 235 GGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFS 294
GGE++ P + KK +N R + EV ++ PP
Sbjct: 451 GGEKK----PATDAPESSKKKNRKNGKR--------------KAQAEVLAAEYANPPKHP 492
Query: 295 RARVMGQDKDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGK 335
+ K AWC H H+ +DC+ K+ +EK + S K
Sbjct: 493 DPQ-SSDTKKAWCPIHKTDRHSLEDCLVFKKSLEKHIASEK 532
>ref|XP_471080.1| OSJNBb0089K24.6 [Oryza sativa (japonica cultivar-group)]
gi|38344100|emb|CAD39396.2| OSJNBb0089K24.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1400
Score = 100 bits (249), Expect = 9e-20
Identities = 70/285 (24%), Positives = 119/285 (41%), Gaps = 26/285 (9%)
Query: 46 FSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADA 105
FS + + P+ F+P + +DG DP E + V++T + G D+ L
Sbjct: 429 FSRSLRDVRWPERFRPRAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGY 488
Query: 106 ALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFND 165
A W M LP +SI + D+ ++F F GT R + L + Q ESLREY+ RFN+
Sbjct: 489 ARSWLMHLPPYSISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNE 548
Query: 166 STIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKA 225
+ + A ++G+ + +A + + + E ++A+
Sbjct: 549 CRNTIPEITDASVIRALKSGVRDRYTTQELATRRITTTRRLFEIVE-----RCAHADDAL 603
Query: 226 REAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFES 285
R ++ +GGE++ P + KK +N R + EV +
Sbjct: 604 RRKNDKPKTGGEKK----PATDASESSKKKNRKNGKR--------------KAQAEVLAA 645
Query: 286 KIIPPPPFSRARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEK 329
+ + PP R D K AWC H H+ +DC+ K+ +EK
Sbjct: 646 EYVNPP--KRPDPQSSDTKKAWCPIHKTDRHSLEDCLVFKKSLEK 688
>gb|AAT77397.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1194
Score = 100 bits (248), Expect = 1e-19
Identities = 77/329 (23%), Positives = 136/329 (40%), Gaps = 27/329 (8%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 444 PERFRPGAIEKYDGSTDPKEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPP 503
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + Q ESLREY+ R N+ +
Sbjct: 504 YSISSWADLRQQFIANFQGTYKRHAIEDDLHALTQNSGESLREYVRRLNECRNTIPEITD 563
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E + + A+ R +R +G
Sbjct: 564 ASVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----QCAYADDALRRKNDRPKTG 618
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE++ P + KK +N R + EV ++ PP R
Sbjct: 619 GEKK----PATDTSESSKKKNRKNGKR--------------KAQAEVLAAEYANPP--KR 658
Query: 296 ARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGYAKERRHNERQEDKPN 354
D K +WC H H+ +DC+ K+ +EK + K + + E +P+
Sbjct: 659 LDPQSSDTKKSWCLIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRVRVVEMNEETAPHEPD 718
Query: 355 PEQKHTLHTISGGFAGGGESSNSMKKYAR 383
+ +S F GG + +S ++Y +
Sbjct: 719 SAYPDSDLHVSHIF-GGSTTYSSKREYKK 746
>ref|XP_474849.1| OSJNBa0035O13.7 [Oryza sativa (japonica cultivar-group)]
gi|38346005|emb|CAE01888.2| OSJNBa0035O13.7 [Oryza
sativa (japonica cultivar-group)]
Length = 1421
Score = 99.8 bits (247), Expect = 2e-19
Identities = 75/306 (24%), Positives = 131/306 (42%), Gaps = 34/306 (11%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG DP E + V++T + G D+ L + +A W M LP
Sbjct: 106 PERFRPGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTAWKGSARSWLMHLPS 165
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + ESLR Y+ RFN+ +
Sbjct: 166 YSISSWSDLWQQFVANFQGTNKRHAIEDDLHALTHNSGESLRGYVRRFNECRNTIPEITD 225
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + + E ++ + R ++ +G
Sbjct: 226 ASVICAFKSGVRDHYTTQVLATRRITTTQRLFEIVE-----RCAHVDDALRRKNDKPKTG 280
Query: 236 GERRNHYVPPNRDRG-TFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFS 294
GE++ P D + KK +N R + EV ++ PP
Sbjct: 281 GEKK-----PTADASESSKKKNHKNGKR--------------KAQAEVLAAEYANPP--K 319
Query: 295 RARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGK-LRGYAKERRHNERQ--- 349
R G D K +WC H H+ +DC+ K+ +EK + K RG A + + +E++
Sbjct: 320 RPDPQGSDTKKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRGAAPKMKWSEQRIEF 379
Query: 350 --EDKP 353
ED P
Sbjct: 380 SAEDHP 385
>ref|XP_468909.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209453|gb|AAO37471.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|41393196|gb|AAS01919.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1535
Score = 99.8 bits (247), Expect = 2e-19
Identities = 51/185 (27%), Positives = 90/185 (48%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S I P+P FK P +P + G DP E ++++ + + ++ K K++
Sbjct: 306 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDG 365
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
A WY +LP SI ++ + F F GT L +RQ P ES+REY+ RF+
Sbjct: 366 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 425
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKK 224
+ +V + + + A GL G+ IA K ++E ++ + + +GEE + ++
Sbjct: 426 QARCQVQDIIEASVINAASAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDSKRRQ 485
Query: 225 AREAK 229
A +A+
Sbjct: 486 AIQAE 490
>gb|AAT77333.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50511389|gb|AAT77312.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1551
Score = 99.8 bits (247), Expect = 2e-19
Identities = 78/334 (23%), Positives = 133/334 (39%), Gaps = 30/334 (8%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ +P + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 389 PERLRPGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPP 448
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + Q ESLREY+ RFN+ +
Sbjct: 449 YSISSWIDLWQQFVANFQGTYKRHAIEDDLHTLTQNSGESLREYVRRFNECRNTIPEITD 508
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E ++ + R + +G
Sbjct: 509 AFVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----RCAHVDDALRRKNNKPKTG 563
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE++ P D K R + + EV ++ PP R
Sbjct: 564 GEKK-----PAVDASESSKKKNRKNGK-------------RKAQAEVLAAEYANPP--KR 603
Query: 296 ARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGYAKERRHNE---RQED 351
G D K +WC H H+ +DC+ K+ +EK + K + ++ E + D
Sbjct: 604 PDPQGSDTKKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRVCVVEKNEETPPHESD 663
Query: 352 KPNPEQKHTLHTISGGFAGGGESSNSMKKYARQV 385
P+ + I GG + S KK R+V
Sbjct: 664 SAYPDSDLHVSHIFGG-STTYSSKREYKKVEREV 696
>gb|AAR00629.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50901060|ref|XP_462963.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1445
Score = 99.4 bits (246), Expect = 2e-19
Identities = 81/336 (24%), Positives = 139/336 (41%), Gaps = 40/336 (11%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P F+ + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 180 PKRFRSGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPP 239
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L Q P ESLR+Y+ RFN+ +
Sbjct: 240 YSISLWADLWQQFVANFQGTYKRHAIEDDLHASTQNPGESLRDYVRRFNECRNTIPEITD 299
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADS---MEEIIARAECYVKGEESNAEKKAREAKERG 232
+ AF++G+ + +A + + + EI+ R ++A+ R ++
Sbjct: 300 ASVICAFKSGVRDRYTTQELATRRVTTTRRLFEIVDRC--------AHADDAVRRKNDKP 351
Query: 233 NSGGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPP 292
+GGE++ P +D K R + + +V ++ PPP
Sbjct: 352 KTGGEKK-----PAKDAPKSSKKKNRKSGK-------------RKAQAKVLATEYADPPP 393
Query: 293 FSRARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEK--LLLSGK-LRGYAKERRHNER 348
R G D K WC H H+ +DC+ K+ + K L GK +R K+ +
Sbjct: 394 -KRPDPQGSDVKKIWCLIHKSDRHSLEDCLVFKKSLAKHMALEKGKRIRVVEKDAEAVTQ 452
Query: 349 QEDKPNPEQK-HTLHTISGGFAGGGESSNSMKKYAR 383
+ D P+ H H GG + +S ++Y +
Sbjct: 453 ESDSAYPDSDLHVSHIF-----GGSTAYSSKREYKK 483
>gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533914|ref|NP_921259.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|14018058|gb|AAK52121.1| Putative retroelement [Oryza
sativa]
Length = 2079
Score = 99.4 bits (246), Expect = 2e-19
Identities = 73/302 (24%), Positives = 124/302 (40%), Gaps = 30/302 (9%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 575 PERFRPGAIEKYDGSIDPEEFLQVYSTVLYAAGADDNAVANYLPTALKGSARSWLMHLPP 634
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + Q ESLREY+ RFN+ +
Sbjct: 635 YSISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNECRNTIPEITD 694
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E ++ + R ++ +G
Sbjct: 695 ASVIRAFKSGVRDRYTTQELATRHITTTRRLFQIVE-----RCAHVDDALRRKNDKPKTG 749
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE+++ D K R + + EV ++ PP R
Sbjct: 750 GEKKS-----AADTSESSKKKNRKNGK-------------RKAQAEVLAAEYANPP--RR 789
Query: 296 ARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGYAKERRHNERQEDKPN 354
G D K +WC H H+ +DC+ K+ +EK + K K R E+ E+ P
Sbjct: 790 PDPQGSDTKKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEK----GKRVRVVEKNEESPP 845
Query: 355 PE 356
E
Sbjct: 846 HE 847
>gb|AAP54915.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536652|ref|NP_922628.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|13876537|gb|AAK43513.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1519
Score = 99.0 bits (245), Expect = 3e-19
Identities = 73/316 (23%), Positives = 130/316 (41%), Gaps = 29/316 (9%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG +P E + V++T + G D+ L+ +A W M LP
Sbjct: 292 PERFRPGAIEKYDGSTNPEEFLQVYSTVLYAAGADDNALANYLSTALKGSARSWLMHLPP 351
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + +L + Q ESLREY+ RFN+ +
Sbjct: 352 YSISSWADLWQQFVANFQGTYKRHAIEDNLHALTQNSGESLREYVRRFNECRNTIPEITD 411
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E ++ + R ++ +G
Sbjct: 412 ASVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----RCAHVDDALRRKNDKPKTG 466
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE+++ T + +NR + EV ++ PP R
Sbjct: 467 GEKKS---------ATDASESSKKKNR---------KNGKRKAQAEVLAAEYANPP--KR 506
Query: 296 ARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGK---LRGYAKERRHNERQED 351
G D K +WC H H+ +DC+ K+ +EK + K +R K + D
Sbjct: 507 PDPQGSDTKKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRVRIVEKNEETAPHESD 566
Query: 352 KPNPEQKHTLHTISGG 367
P+ + I GG
Sbjct: 567 YAYPDSDLHISHIFGG 582
>gb|AAX96254.1| transposon protein, putative, unclassified [Oryza sativa (japonica
cultivar-group)]
Length = 631
Score = 99.0 bits (245), Expect = 3e-19
Identities = 88/389 (22%), Positives = 161/389 (40%), Gaps = 32/389 (8%)
Query: 1 MKSQIALLLEQNEALLASVETIQQVQQQEKTDSHHGDLDEPEPQ--PFSAKIWNAPVPDN 58
++ +A L +++ LL S + + H P + F+ + + P+
Sbjct: 218 LRESVANLSKRSRKLLQSTTGTTDSWRHPRRTHDHRQPTAPSARCRAFNRSLRDVRWPER 277
Query: 59 FKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPCFSI 118
F+P + +DG DP E + V++T + G D+ L + W M LP +SI
Sbjct: 278 FQPGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPMALKGSTRSWLMHLPPYSI 337
Query: 119 MGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEVF 178
+ D+ ++F F GT R + L + Q P ESLR+Y+ RFN+ + +
Sbjct: 338 SSWADLWQQFIANFQGTYKRHAIEDDLHALTQNPGESLRDYVRRFNECRNTIPDITNVSV 397
Query: 179 VGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSGGER 238
+ AF+ G+ + +A + + + V ++A+ R ++ +GG++
Sbjct: 398 IHAFKTGVRDCYTTQELATRRITTTRRLFE-----VVDRCAHADDALRRKNDKPKAGGDK 452
Query: 239 RNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSRARV 298
+ P +D KP ++ + + + EV S+ PP
Sbjct: 453 K-----PAKDT---PKPSKKKSGK----------SGKRKAQAEVLASEYERPP--KHPDP 492
Query: 299 MGQD-KDAWCKYHLVQGHNTDDCVHLKREIEK-LLLSGKLRGYAKERRHNERQEDKPNPE 356
G D K WC H H+ ++C+ K+ +EK L L R E+ E +D
Sbjct: 493 QGSDTKRIWCPIHKSDIHSLEECLIFKKSLEKQLALEKGKRVRVVEKATEETTQDSDLAY 552
Query: 357 QKHTLHTISGGFAGGGESSNSMKKYARQV 385
LH +S F GG ++ S+K+ ++V
Sbjct: 553 LDSYLH-VSHIF--GGSTAYSLKREYKKV 578
>gb|AAX96740.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1372
Score = 99.0 bits (245), Expect = 3e-19
Identities = 80/332 (24%), Positives = 132/332 (39%), Gaps = 32/332 (9%)
Query: 59 FKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPCFSI 118
F+P + +DG DP E + V++T + D+ L +A W M LP +SI
Sbjct: 195 FRPGAIEKYDGSTDPEEFLQVYSTVLYAARADDNALANYLPTALKGSARSWLMHLPPYSI 254
Query: 119 MGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEVF 178
D+ ++F F GT R + L + Q ESLREY+ RFN+ +
Sbjct: 255 SSCADLCQQFIANFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNECRNTIPEITDASV 314
Query: 179 VGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSGGER 238
+ AF++G+ + + + + + E ++A+ R ++ +GGE+
Sbjct: 315 ICAFKSGVRDRYTTQELVTRRITTTRRLFEIVE-----RCAHADDALRRKNDKPKTGGEK 369
Query: 239 RNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSRARV 298
+ P D K R + + EV ++ PP R
Sbjct: 370 K-----PATDAPESSKKKNRKSGKM-------------KAQAEVLAAEYANPP--KRPDP 409
Query: 299 MGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGK---LRGYAKERRHNERQEDKPN 354
G D K AWC H + H+ +DC+ K+ +EK + K +R K+ ++ D
Sbjct: 410 QGSDTKKAWCPIHKIDRHSLEDCLVFKKSLEKHMAFEKGKRVRVVEKDAEVAPQESDTAY 469
Query: 355 PEQK-HTLHTISGGFAGGGESSNSMKKYARQV 385
P+ H H G A S KK R+V
Sbjct: 470 PDSNLHVSHIFGGSTA--YSSKREYKKVEREV 499
>gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37534078|ref|NP_921341.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881722|gb|AAM01123.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1292
Score = 98.6 bits (244), Expect = 3e-19
Identities = 51/185 (27%), Positives = 90/185 (48%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S I P+P FK P +P + G DP E ++++ + + ++ K K++
Sbjct: 49 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDG 108
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
A WY +LP SI ++ + F F GT L +RQ P ES+REY+ RF+
Sbjct: 109 IARSWYFNLPDNSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 168
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKK 224
+ +V + + + A GL G+ IA K ++E ++ + + +GEE + ++
Sbjct: 169 QARCQVQDITEASVINAASAGLLEGELTRKIANKEPLTLEHLLCIIDGFARGEEDSKRRQ 228
Query: 225 AREAK 229
A +A+
Sbjct: 229 AIQAE 233
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 98.6 bits (244), Expect = 3e-19
Identities = 83/305 (27%), Positives = 130/305 (42%), Gaps = 33/305 (10%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S + +P P +KP LP F G+ DP + + F ++ G +++ K
Sbjct: 159 PLSEGLQTSPWPTTYKPITLPKFSGKADPRQFLMSFEAAVASAGGNETVMAKSFVIAAEG 218
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
AL WY L SI ++++ K F G + ST LF RQ E+LREY RF
Sbjct: 219 DALAWYSMLRPGSIYSWENLRDKILANFQGFAVESLTSTDLFQCRQNQGEALREYFQRFV 278
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKG-------- 216
+ + +EV + A GL G F +A++ SM E+ E Y +
Sbjct: 279 QTKARAPGVPKEVAIEAAIKGLRIGPFAAHLAREKPASMHELYHEFEKYCRSDNDYRKRL 338
Query: 217 EESNAEKKA---REAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNT 273
E+ N++K+ R ++++ S ERR P R+ G + N P++ P N
Sbjct: 339 EDQNSQKRQSNDRNSQKKDLSRDERR-----PQREAG------GQMMNIEQPKNDRPENN 387
Query: 274 RPERILKEVFESKIIPPPPFSRARVMGQDKD-------AWCKYH-LVQGHNTDDCVHLKR 325
RP E S+ +P R G K+ +C +H +GH+T DC K
Sbjct: 388 RPP---VEARSSERVPNQAGRGGRNAGWRKNQSQRPRKQYCFFHGEEKGHSTRDCPDAKE 444
Query: 326 EIEKL 330
E++
Sbjct: 445 TQERI 449
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 815,155,719
Number of Sequences: 2540612
Number of extensions: 37865416
Number of successful extensions: 104487
Number of sequences better than 10.0: 636
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 103217
Number of HSP's gapped (non-prelim): 1046
length of query: 437
length of database: 863,360,394
effective HSP length: 131
effective length of query: 306
effective length of database: 530,540,222
effective search space: 162345307932
effective search space used: 162345307932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)
Medicago: description of AC135566.1