BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135565.5 + phase: 0 /pseudo
(93 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV44035.1| putative helicase [Oryza sativa (japonica cultiva... 97 8e-20
gb|AAU44208.1| unknown protein [Oryza sativa (japonica cultivar-... 97 8e-20
ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana] 89 4e-17
emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228... 87 1e-16
dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana] 86 2e-16
ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana] 86 2e-16
ref|NP_175704.1| hypothetical protein [Arabidopsis thaliana] gi|... 86 3e-16
ref|NP_913627.1| putative helicase [Oryza sativa (japonica culti... 85 4e-16
gb|AAT85173.1| hypothetical protein [Oryza sativa (japonica cult... 85 4e-16
ref|NP_176623.2| hypothetical protein [Arabidopsis thaliana] 85 4e-16
dbj|BAD81603.1| helicase-like protein [Oryza sativa (japonica cu... 85 4e-16
gb|AAG51717.1| unknown protein; 11471-16325 [Arabidopsis thalian... 85 4e-16
ref|NP_912739.1| unnamed protein product [Oryza sativa (japonica... 85 5e-16
gb|AAD15468.1| putative helicase [Arabidopsis thaliana] gi|25353... 84 1e-15
gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|2019761... 83 2e-15
gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353... 83 2e-15
gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultiva... 82 4e-15
gb|AAP54104.1| hypothetical protein [Oryza sativa (japonica cult... 81 6e-15
dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana] 81 6e-15
gb|AAK54292.1| putative helicase [Oryza sativa (japonica cultiva... 81 6e-15
>gb|AAV44035.1| putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1634
Score = 97.4 bits (241), Expect = 8e-20
Identities = 44/92 (47%), Positives = 65/92 (69%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M NR CF ALD++LR+++ S+ +DN TKPFGG VL GDFRQ+LPVVR R QIV+++
Sbjct: 1267 MANRICFEALDRSLRDILRSKGEDNSTKPFGGMTVVLGGDFRQILPVVRKGRRTQIVNAS 1326
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQEE 92
+ S +W+ + +LT NM LS + + D+++
Sbjct: 1327 IKRSYLWQHFHIFKLTRNMRLSCISRDEDEQK 1358
>gb|AAU44208.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1525
Score = 97.4 bits (241), Expect = 8e-20
Identities = 44/92 (47%), Positives = 65/92 (69%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M NR CF ALD++LR+++ S+ +DN TKPFGG VL GDFRQ+LPVVR R QIV+++
Sbjct: 1158 MANRICFEALDRSLRDILRSKGEDNSTKPFGGMTVVLGGDFRQILPVVRKGRRTQIVNAS 1217
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQEE 92
+ S +W+ + +LT NM LS + + D+++
Sbjct: 1218 IKRSYLWQHFHIFKLTRNMRLSCISRDEDEQK 1249
>ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana]
Length = 1099
Score = 88.6 bits (218), Expect = 4e-17
Identities = 47/92 (51%), Positives = 65/92 (70%), Gaps = 4/92 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+R+CF +LD++L +V+G N D K PFGGKV V GDFRQVLPV+ A R +IV +A
Sbjct: 729 MMSRYCFESLDRSLNDVIG--NIDGK--PFGGKVVVFGGDFRQVLPVIHGAGRAEIVLAA 784
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQEE 92
+N+S +W C+VL LT NM L + + + D+ E
Sbjct: 785 LNSSYLWEHCKVLTLTKNMRLMSNDLDKDEAE 816
>emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228453|ref|NP_189796.1|
AT hook motif-containing protein-related [Arabidopsis
thaliana] gi|11357786|pir||T48965 hypothetical protein
F4M19.60 - Arabidopsis thaliana
Length = 1752
Score = 87.0 bits (214), Expect = 1e-16
Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 4/90 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++FCF +LDK+ +++ NKDNK FGGKV V GDFRQVLPV+ A R +IV S+
Sbjct: 1383 MMSKFCFESLDKSFYDILN--NKDNKV--FGGKVVVFGGDFRQVLPVINGAGRVEIVMSS 1438
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQ 90
+NAS +W C+VL+LT NM L + ++++
Sbjct: 1439 LNASYLWDHCKVLKLTKNMRLLSGGLSSEE 1468
>dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 85.9 bits (211), Expect = 2e-16
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++FCF ALDK+ +++ + DNK FGGKV V GDFRQVLPV+ A R +IV S+
Sbjct: 1060 MMSKFCFEALDKSFSDII--KRVDNKV--FGGKVMVFGGDFRQVLPVINGAGRAEIVMSS 1115
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQ 90
+NAS +W C+VLRLT NM L + + D+
Sbjct: 1116 LNASYLWDHCKVLRLTKNMRLLNNDLSVDE 1145
>ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana]
Length = 1419
Score = 85.9 bits (211), Expect = 2e-16
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++FCF ALDK+ +++ + DNK FGGKV V GDFRQVLPV+ A R +IV S+
Sbjct: 1051 MMSKFCFEALDKSFSDII--KRVDNKV--FGGKVMVFGGDFRQVLPVINGAGRAEIVMSS 1106
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQ 90
+NAS +W C+VLRLT NM L + + D+
Sbjct: 1107 LNASYLWDHCKVLRLTKNMRLLNNDLSVDE 1136
>ref|NP_175704.1| hypothetical protein [Arabidopsis thaliana]
gi|12324645|gb|AAG52281.1| hypothetical protein;
100703-104276 [Arabidopsis thaliana]
Length = 996
Score = 85.5 bits (210), Expect = 3e-16
Identities = 42/81 (51%), Positives = 57/81 (69%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++ CF +LD+TLR++M + KPFGGK V GDFRQVLPV+ A R++IV +A
Sbjct: 655 MMSKHCFESLDRTLRDIMNNPGD----KPFGGKGIVFGGDFRQVLPVINGAGREEIVFAA 710
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W C+VL LT NM L
Sbjct: 711 LNSSYIWEHCKVLELTKNMRL 731
>ref|NP_913627.1| putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1453
Score = 85.1 bits (209), Expect = 4e-16
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M +R CF ALD+TLR+++ N N PFGGK VL GDFRQ+LPV++ TR IV ++
Sbjct: 1066 MTHRRCFEALDRTLRDLLSEHNPSNSVLPFGGKFVVLGGDFRQILPVIKKGTRNSIVDAS 1125
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+ S +W+ +L+LT+NM L
Sbjct: 1126 ITNSPLWQHVVLLKLTVNMRL 1146
>gb|AAT85173.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 807
Score = 85.1 bits (209), Expect = 4e-16
Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 3 NRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSAVN 62
+++CF +LD+TLR+++ N ++ K FGG VL GDFRQ LPV++ AT+QQI+ S +
Sbjct: 429 HKYCFESLDRTLRDILSETNPNSLDKQFGGITVVLGGDFRQTLPVIQNATKQQILRSCIV 488
Query: 63 ASKVWRRCEVLRLTMNMGLSTANNNA-DQEEV 93
S +W +C ++ LT NM L++A+ +A D+EE+
Sbjct: 489 NSYLWNKCILIELTENMRLTSASISAQDREEL 520
>ref|NP_176623.2| hypothetical protein [Arabidopsis thaliana]
Length = 1231
Score = 85.1 bits (209), Expect = 4e-16
Identities = 42/81 (51%), Positives = 57/81 (69%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++ CF +LD+TLR++M + KPFGGKV V GDFRQVL V+ A R++IV +A
Sbjct: 917 MMSKHCFESLDRTLRDIMNNPGD----KPFGGKVIVFGGDFRQVLSVINGAGREEIVFAA 972
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W C+VL LT NM L
Sbjct: 973 LNSSYIWEHCKVLELTKNMRL 993
>dbj|BAD81603.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 85.1 bits (209), Expect = 4e-16
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M +R CF ALD+TLR+++ N N PFGGK VL GDFRQ+LPV++ TR IV ++
Sbjct: 1265 MTHRRCFEALDRTLRDLLSEHNPSNSVLPFGGKFVVLGGDFRQILPVIKKGTRNSIVDAS 1324
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+ S +W+ +L+LT+NM L
Sbjct: 1325 ITNSPLWQHVVLLKLTVNMRL 1345
>gb|AAG51717.1| unknown protein; 11471-16325 [Arabidopsis thaliana]
gi|25404482|pir||C96668 unknown protein F15H21.18
[imported] - Arabidopsis thaliana
Length = 753
Score = 85.1 bits (209), Expect = 4e-16
Identities = 42/81 (51%), Positives = 57/81 (69%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++ CF +LD+TLR++M + KPFGGKV V GDFRQVL V+ A R++IV +A
Sbjct: 633 MMSKHCFESLDRTLRDIMNNPGD----KPFGGKVIVFGGDFRQVLSVINGAGREEIVFAA 688
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W C+VL LT NM L
Sbjct: 689 LNSSYIWEHCKVLELTKNMRL 709
>ref|NP_912739.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1278
Score = 84.7 bits (208), Expect = 5e-16
Identities = 41/92 (44%), Positives = 58/92 (62%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M +R CF ALD+TLR+++ N PFGGKV VL GDFRQ+LPVVR +R I+ ++
Sbjct: 874 MTHRRCFEALDRTLRDLLSEHAPSNGLVPFGGKVVVLGGDFRQILPVVRKGSRASIIDAS 933
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQEE 92
+ S +W +L+LT+NM L N Q++
Sbjct: 934 ITNSPLWSHAVLLKLTVNMRLLQCNLGEQQQQ 965
>gb|AAD15468.1| putative helicase [Arabidopsis thaliana] gi|25353667|pir||F84517
probable helicase [imported] - Arabidopsis thaliana
Length = 1265
Score = 83.6 bits (205), Expect = 1e-15
Identities = 47/91 (51%), Positives = 62/91 (67%), Gaps = 5/91 (5%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+RFCF ALDK+ +++ +N DN FGGKV V GDFRQV PV+ A R +IV S+
Sbjct: 913 MMSRFCFEALDKSFSDII--KNTDNTV--FGGKVVVFGGDFRQVFPVINGAGRAEIVMSS 968
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQE 91
+NAS +W C+VL+LT N L ANN ++ E
Sbjct: 969 LNASYLWDNCKVLKLTKNTRL-LANNLSETE 998
>gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|20197614|gb|AAM15154.1|
unknown protein [Arabidopsis thaliana]
Length = 1308
Score = 82.8 bits (203), Expect = 2e-15
Identities = 37/89 (41%), Positives = 60/89 (66%), Gaps = 4/89 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M++R C+ ALD+TL++++ ++N KPFGGK GDFRQ+LPV+ +R+QI+ ++
Sbjct: 938 MLHRHCYEALDRTLKDIVQADNH----KPFGGKTITFGGDFRQILPVITKGSREQIIHAS 993
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNAD 89
+ +S++W C+VL LT NM L+ D
Sbjct: 994 LTSSRLWNSCKVLTLTKNMRLTADPTEKD 1022
>gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353663|pir||H84486
probable helicase [imported] - Arabidopsis thaliana
Length = 1241
Score = 82.8 bits (203), Expect = 2e-15
Identities = 44/81 (54%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+R+CF +LD++L +V+G N D K PFGGKV V GDFRQVL V+ A R +IV +A
Sbjct: 958 MMSRYCFESLDRSLNDVIG--NVDGK--PFGGKVVVFGGDFRQVLHVIHGAGRAEIVLAA 1013
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W C VL LT NM L
Sbjct: 1014 LNSSYLWEHCNVLTLTKNMSL 1034
>gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultivar-group)]
gi|37535038|ref|NP_921821.1| putative helicase [Oryza
sativa (japonica cultivar-group)]
gi|14140296|gb|AAK54302.1| putative helicase [Oryza
sativa (japonica cultivar-group)]
Length = 1573
Score = 81.6 bits (200), Expect = 4e-15
Identities = 42/92 (45%), Positives = 59/92 (63%), Gaps = 2/92 (2%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M NR CF ALDK+LR+V N+++ KPFGG VL GDFRQ+LP+V R+ V+++
Sbjct: 1205 MANRNCFEALDKSLRDVQRFRNENSYQKPFGGMTVVLGGDFRQILPIVPKGRREHTVNAS 1264
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQEE 92
+ S +W+ EV LT NM L++ + DQ E
Sbjct: 1265 IKFSYLWQHFEVFNLTKNMRLNSVSK--DQAE 1294
>gb|AAP54104.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37535030|ref|NP_921817.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1477
Score = 81.3 bits (199), Expect = 6e-15
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M NR CF ALDK+LR+V N+++ KPFGG VL GDFRQ+LP+V R+ V++
Sbjct: 1109 MANRNCFEALDKSLRDVQRCRNENSCQKPFGGMTVVLGGDFRQILPIVPKGRREHTVNAT 1168
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQEE 92
+ S +W+ EV LT NM L+ + + + +
Sbjct: 1169 IKCSYLWQHFEVFNLTKNMRLNYVSKDQTEHQ 1200
>dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana]
Length = 1669
Score = 81.3 bits (199), Expect = 6e-15
Identities = 36/81 (44%), Positives = 59/81 (72%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+++CF +LDK+L++++ + + PFGGK+ + GDFRQ+LPV+ A R+ IV S+
Sbjct: 1304 MMSKYCFESLDKSLKDILSTP----EDMPFGGKLIIFGGDFRQILPVILAAGRELIVKSS 1359
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W+ C+V +LT NM L
Sbjct: 1360 LNSSHLWQYCKVFKLTKNMRL 1380
>gb|AAK54292.1| putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1501
Score = 81.3 bits (199), Expect = 6e-15
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M NR CF ALDK+LR+V N+++ KPFGG VL GDFRQ+LP+V R+ V++
Sbjct: 1133 MANRNCFEALDKSLRDVQRCRNENSCQKPFGGMTVVLGGDFRQILPIVPKGRREHTVNAT 1192
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQEE 92
+ S +W+ EV LT NM L+ + + + +
Sbjct: 1193 IKCSYLWQHFEVFNLTKNMRLNYVSKDQTEHQ 1224
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,321,098
Number of Sequences: 2540612
Number of extensions: 4261239
Number of successful extensions: 7790
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 7667
Number of HSP's gapped (non-prelim): 127
length of query: 93
length of database: 863,360,394
effective HSP length: 69
effective length of query: 24
effective length of database: 688,058,166
effective search space: 16513395984
effective search space used: 16513395984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC135565.5