BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.3 + phase: 0
(166 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44107.1| putative polyprotein [Cicer arietinum] 201 5e-51
gb|AAO45752.1| pol protein [Cucumis melo] 180 1e-44
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 173 1e-42
gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum] g... 172 4e-42
gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum] 172 4e-42
gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica ... 160 2e-38
gb|AAV31169.1| putative polyprotein [Solanum tuberosum] 155 5e-37
gb|AAT66771.1| putative polyprotein [Solanum demissum] 154 9e-37
gb|AAD22158.1| polyprotein [Sorghum bicolor] 153 1e-36
gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-... 153 2e-36
gb|AAR00610.1| putative reverse transcriptase [Oryza sativa (jap... 152 3e-36
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 152 3e-36
gb|AAP55130.1| putative gypsy-type retrotransposon polyprotein [... 152 3e-36
ref|NP_910342.1| Similar to 22 kDa kafirin cluster; Ty3-Gypsy ty... 152 4e-36
gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-... 151 7e-36
gb|AAP53894.1| putative gag-pol protein [Oryza sativa (japonica ... 150 1e-35
ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cu... 150 1e-35
emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar... 150 1e-35
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar... 150 1e-35
gb|AAT39954.1| putative integrase [Solanum demissum] 150 1e-35
>emb|CAC44107.1| putative polyprotein [Cicer arietinum]
Length = 141
Score = 201 bits (512), Expect = 5e-51
Identities = 93/140 (66%), Positives = 119/140 (84%), Gaps = 1/140 (0%)
Query: 27 QEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQISERVGTVAYRVGLPTHLSNLHDVFH 86
++GDHVFLRVTP TGV RALKS+KLTPKFIGPYQIS R+G VAYR+ LP LSN+HDVFH
Sbjct: 1 EQGDHVFLRVTPTTGVGRALKSKKLTPKFIGPYQISARIGPVAYRIALPPILSNIHDVFH 60
Query: 87 VSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRIEDREVKKLRGKDIPLVKVVWGGVTG 146
VSQL+KY+ADPSHVI + +Q++DNL+ E P+RI+D ++K+LR KD+ LVKV+W +TG
Sbjct: 61 VSQLRKYLADPSHVIEPDTIQLKDNLSFEVPPVRIDDMKIKRLRTKDVSLVKVIWNPITG 120
Query: 147 ESLTWELESKMRDSYPESFV 166
++ TWELESKMR+ +PE F+
Sbjct: 121 DA-TWELESKMREQHPELFI 139
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 180 bits (457), Expect = 1e-44
Identities = 89/164 (54%), Positives = 112/164 (68%)
Query: 2 IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQI 61
IR +M + SRQKSY D RRK LEF+ GD VFL+V PM GV R + KL+P+F+GP++I
Sbjct: 758 IRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEI 817
Query: 62 SERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRI 121
ER+G VAYR+ LP LS +HDVFHVS L+KYV DPSHV+ E +++ +NL+ P+ +
Sbjct: 818 LERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEV 877
Query: 122 EDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
R VK LR K IPLVKV+W E TWE E MR YPE F
Sbjct: 878 LARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 921
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 173 bits (439), Expect = 1e-42
Identities = 82/165 (49%), Positives = 118/165 (70%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+I+E++K + SRQKSY D RR+ALEF+ D V+L+V+PM GV R K KL+P++IGPY+
Sbjct: 1431 VIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYR 1490
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I +RVG+VAY + LP L+ +H VFH+S L+K + DPS ++P E V+++DNL+ E P++
Sbjct: 1491 IVQRVGSVAYELELPQELAAVHPVFHISMLKKCIGDPSLILPTESVKIKDNLSYEEVPVQ 1550
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I DR+V++LR KD+ VKV+W E TWE E M+ YP F
Sbjct: 1551 ILDRQVRRLRTKDVASVKVLWRNQFVEEATWEAEEDMKKRYPHLF 1595
>gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum]
gi|47825020|gb|AAT38791.1| putative gag-pol polyprotein
[Solanum demissum]
Length = 1351
Score = 172 bits (435), Expect = 4e-42
Identities = 80/165 (48%), Positives = 117/165 (70%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+I+E++K + SRQKSY D RR+ALEF+ D V+L+V+PM GV R K KL+P++IGPY+
Sbjct: 1180 VIKERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYR 1239
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I++R+G VAY + LP L+ +H VFH+S L+K + DPS ++P E +++ DNL+ E P++
Sbjct: 1240 IAKRIGNVAYELELPQELAAVHPVFHISMLKKCIGDPSLILPTESIKINDNLSYEEVPVQ 1299
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I DR+V++LR KD+ VKV+W E TWE E M+ YP F
Sbjct: 1300 ILDRQVRRLRTKDVASVKVLWRDQFVEEATWEAEEDMKKKYPYLF 1344
>gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1351
Score = 172 bits (435), Expect = 4e-42
Identities = 80/165 (48%), Positives = 117/165 (70%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+I+E++K + SRQKSY D RR+ALEF+ D V+L+V+PM GV R K KL+P++IGPY+
Sbjct: 1180 VIKERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYR 1239
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I++R+G VAY + LP L+ +H VFH+S L+K + DPS ++P E +++ DNL+ E P++
Sbjct: 1240 IAKRIGNVAYELELPQELAAVHPVFHISMLKKCIGDPSLILPTESIKINDNLSYEEVPVQ 1299
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I DR+V++LR KD+ VKV+W E TWE E M+ YP F
Sbjct: 1300 ILDRQVRRLRTKDVASVKVLWRDQFVEEATWEAEEDMKKKYPYLF 1344
>gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
Length = 552
Score = 160 bits (404), Expect = 2e-38
Identities = 79/165 (47%), Positives = 109/165 (65%)
Query: 2 IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQI 61
I + M A+ SRQKSY D RR+ LEF GD V LRV+P G+ R + KL+P++IGP+ I
Sbjct: 382 IGQNMLAAQSRQKSYADTRRRDLEFAVGDQVLLRVSPTKGIVRFGTTGKLSPRYIGPFVI 441
Query: 62 SERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRI 121
+ RVG++AYR+ LP ++ +HDVFHVS L+KY+ DP H I E + V +LT+E P+RI
Sbjct: 442 TARVGSLAYRLQLPESMNGVHDVFHVSMLRKYLRDPEHKIDLEPIMVEQDLTIECRPVRI 501
Query: 122 EDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESFV 166
D + +R + I VKV+W + TWELE +M+ YPE FV
Sbjct: 502 FDWSERVMRRRTIKYVKVLWTNQSEREATWELEEEMKKKYPELFV 546
>gb|AAV31169.1| putative polyprotein [Solanum tuberosum]
Length = 394
Score = 155 bits (391), Expect = 5e-37
Identities = 75/165 (45%), Positives = 110/165 (66%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+I+++++ + SR +SY D+RR+ L F GD VFLRV+PM GV R + KL+P++IGP++
Sbjct: 224 VIQDRLRTAQSRHQSYADQRRRPLRFSVGDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFE 283
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I VG VAY + LP S +H VFHVS L++YV D SHV+ + V++ D LT P+
Sbjct: 284 ILRTVGEVAYELALPPVFSAIHPVFHVSMLRRYVPDESHVLQYDAVELDDRLTFVEEPVA 343
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I R+V++LR + IP+VKV W + E TWE E +MR+ +P F
Sbjct: 344 ILARDVRRLRSRAIPVVKVRWRHCSVEEATWETEQEMREQFPGLF 388
>gb|AAT66771.1| putative polyprotein [Solanum demissum]
Length = 1769
Score = 154 bits (389), Expect = 9e-37
Identities = 75/165 (45%), Positives = 109/165 (65%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+I+++++ + SR +SY D+RR+ L F GD VFLRV+PM GV R + KL+P++IGP++
Sbjct: 1599 VIQDRLRTAQSRHQSYADQRRRPLRFSVGDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFE 1658
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I VG VAY + LP S +H VFHVS L++YV D SHV+ + V++ D LT P+
Sbjct: 1659 ILRTVGEVAYELALPPVFSAIHPVFHVSMLRRYVPDESHVLQYDAVELDDRLTFVEEPVA 1718
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I R+V++LR + IP+VKV W E TWE E +MR+ +P F
Sbjct: 1719 ILARDVRRLRSRAIPVVKVRWRHRPVEEATWETEQEMREQFPSLF 1763
>gb|AAD22158.1| polyprotein [Sorghum bicolor]
Length = 924
Score = 153 bits (387), Expect = 1e-36
Identities = 73/164 (44%), Positives = 105/164 (63%)
Query: 2 IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQI 61
+RE ++ + SRQKSY D RR+ LEF GDHV+L+V+P+ G R KL P+F+GPY+I
Sbjct: 755 VRENLRIAQSRQKSYADNRRRDLEFYVGDHVYLKVSPLRGTFRFHVKGKLAPRFVGPYRI 814
Query: 62 SERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRI 121
S+R+G +AYR+ LP +S +H VFHVSQL+K + P +P E + +++ L P+RI
Sbjct: 815 SKRIGKLAYRLELPEEMSGVHPVFHVSQLRKCLKLPEEEVPIETLDLQETLEYREYPVRI 874
Query: 122 EDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
DR K+ R P+ KV+W T TWE ES+++ YP F
Sbjct: 875 LDRATKETRSSTFPMCKVLWSNHTEREATWEKESELQLRYPYLF 918
>gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1761
Score = 153 bits (386), Expect = 2e-36
Identities = 71/163 (43%), Positives = 111/163 (67%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IRE++K + +RQK+Y D RR+ LEF++GDHV+LRV+P+ G+RR S KL P++IGPY
Sbjct: 1596 LIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYL 1655
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I+ R G VAY++ LP L+++H+VFHVSQL+K + P +P ++++ NLT + P++
Sbjct: 1656 ITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYKERPIK 1715
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPE 163
+ + V++ R K I KV W + + TWE E +R +PE
Sbjct: 1716 VLEEAVRQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFPE 1758
>gb|AAR00610.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50901502|ref|XP_463184.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 843
Score = 152 bits (385), Expect = 3e-36
Identities = 73/165 (44%), Positives = 108/165 (65%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IRE++K + SRQKSY D RR+ LEF+EGD+V+L+V+PM G +R KLTP+++GP+Q
Sbjct: 676 LIRERLKVAQSRQKSYADTRRRNLEFKEGDYVYLKVSPMRGTKRLKVKGKLTPRYVGPFQ 735
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I R G VAY++ LP +++++H VFHVSQL+K + P P E++ + ++LT P+R
Sbjct: 736 IMARRGEVAYQLQLPENIADVHPVFHVSQLKKCLRVPEEQAPLEEINISNDLTYPEHPVR 795
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I D K+ R K + KV W T + TWE E ++ YP F
Sbjct: 796 ILDEAEKRTRTKVWRMYKVQWSNHTEDEATWESEEFLKTEYPHLF 840
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 152 bits (385), Expect = 3e-36
Identities = 73/165 (44%), Positives = 107/165 (64%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IR+++K + SRQKSY D RR+ LEF+EGD+++L+V+PM G +R KL P+++GP+Q
Sbjct: 1303 LIRDRLKIAQSRQKSYADTRRRNLEFKEGDYIYLKVSPMRGTKRFKVKGKLAPRYVGPFQ 1362
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I R G VAY++ LP +++++H VFHVSQL+K + P P E+V + ++LT P+R
Sbjct: 1363 IIARRGEVAYQLQLPENIADVHPVFHVSQLKKCLRVPEEQAPLEEVHISNDLTYPEHPIR 1422
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I D K+ R K + KV W T E TWE E +R YP F
Sbjct: 1423 ILDEAAKRTRSKVWRMYKVQWSNHTEEEATWESEEFLRTEYPHLF 1467
>gb|AAP55130.1| putative gypsy-type retrotransposon polyprotein [Oryza sativa
(japonica cultivar-group)] gi|37537082|ref|NP_922843.1|
putative gypsy-type retrotransposon polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|12643059|gb|AAK00448.1| putative gypsy-type
retrotransposon polyprotein [Oryza sativa]
Length = 762
Score = 152 bits (384), Expect = 3e-36
Identities = 71/163 (43%), Positives = 110/163 (66%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IRE++KA+ +RQK+Y D RR+ LEF++GDHV+LRV+P+ G+RR S KL P++IGPY
Sbjct: 597 LIRERLKAAQNRQKNYVDNRRRDLEFEKGDHVYLRVSPLRGIRRFGMSGKLAPRYIGPYL 656
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I+ R G VAY + LP L+++H+VFHVSQL+K + P +P ++++ NLT + P++
Sbjct: 657 ITARRGEVAYHLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYKERPIK 716
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPE 163
+ + ++ R K I KV W + + TWE E +R +PE
Sbjct: 717 VLEEAERQTRRKTIKFYKVQWSNHSEDEATWEQEDLLRAEFPE 759
>ref|NP_910342.1| Similar to 22 kDa kafirin cluster; Ty3-Gypsy type (AF061282) [Oryza
sativa (japonica cultivar-group)]
Length = 607
Score = 152 bits (383), Expect = 4e-36
Identities = 71/163 (43%), Positives = 110/163 (66%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IRE++K + SRQK+Y D RR+ LEF++GDHV+LRV+P+ G+RR S KL P++IGPY
Sbjct: 442 LIRERLKTAQSRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSSKLAPRYIGPYL 501
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I+ R G VAY++ LP L+++H+VFHVSQL+K + P +P ++++ NLT + P++
Sbjct: 502 ITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELERNLTYKERPIK 561
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPE 163
+ + ++ R K I KV W + + TWE E +R +PE
Sbjct: 562 VLEETERQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFPE 604
>gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1506
Score = 151 bits (381), Expect = 7e-36
Identities = 70/165 (42%), Positives = 107/165 (64%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IR+++K + +RQKSY D+RR+ L F GDHV+L+V+PM G +R KL P++IGPYQ
Sbjct: 1342 LIRDRLKEAQTRQKSYSDRRRRELSFDVGDHVYLKVSPMRGTQRFQIHGKLAPRYIGPYQ 1401
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I + G VAY++ LP LSN+HDVFHVSQL+K + P ED+ ++ NL+ + P+R
Sbjct: 1402 IISKRGQVAYQLELPFQLSNIHDVFHVSQLKKCLRTPIEHTSLEDINLKPNLSYQEYPIR 1461
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I + ++ R I +++V W T + TWE E +++ +P F
Sbjct: 1462 ILEESERRTRKSSIKMLRVQWSNHTVDEATWEREDRLKAEFPSFF 1506
>gb|AAP53894.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|37534610|ref|NP_921607.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1829
Score = 150 bits (380), Expect = 1e-35
Identities = 71/163 (43%), Positives = 109/163 (66%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IRE++K + +RQKSY D RR+ LEF++GDHV+LRV+P+ G+RR S KL P++IGPY
Sbjct: 1664 LIRERLKTAQNRQKSYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYL 1723
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I+ R G VAY++ LP L+++H+VFHVSQL+K + P +P ++ + NLT + P++
Sbjct: 1724 ITARRGEVAYQLELPEDLADVHNVFHVSQLKKCLRVPEEQVPLGNIVLEKNLTYKERPIK 1783
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPE 163
+ + ++ R K I KV W + + TWE E +R +PE
Sbjct: 1784 VLEEAERQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFPE 1826
>ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1014
Score = 150 bits (380), Expect = 1e-35
Identities = 70/163 (42%), Positives = 110/163 (66%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IRE++K + +RQK+Y D RR+ LEF++GDHV+LRV+P+ G+RR S KL P++IGPY
Sbjct: 849 LIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYL 908
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I+ R G VAY++ LP L+++H+VFHVSQL+K + P +P ++++ NLT + P++
Sbjct: 909 ITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYKERPIK 968
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPE 163
+ + ++ R K I KV W + + TWE E +R +PE
Sbjct: 969 VLEEAERQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFPE 1011
>emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar-group)]
gi|50926829|ref|XP_473331.1| OSJNBa0091D06.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1762
Score = 150 bits (380), Expect = 1e-35
Identities = 70/163 (42%), Positives = 110/163 (66%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IRE++K + +RQK+Y D RR+ LEF++GDHV+LRV+P+ G+RR S KL P++IGPY
Sbjct: 1597 LIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYL 1656
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I+ R G VAY++ LP L+++H+VFHVSQL+K + P +P ++++ NLT + P++
Sbjct: 1657 ITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYKERPIK 1716
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPE 163
+ + ++ R K I KV W + + TWE E +R +PE
Sbjct: 1717 VLEEAERQTRRKTIKFYKVQWSNHSEDEATWEQEDLLRAEFPE 1759
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 150 bits (380), Expect = 1e-35
Identities = 72/165 (43%), Positives = 106/165 (63%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+IR+++K + SRQKSY D RR+ LEF+EGD+V+L+V+PM G +R KL P+++GP+Q
Sbjct: 1303 LIRDRLKVAQSRQKSYADTRRRNLEFKEGDYVYLKVSPMRGTKRFKVKGKLAPRYVGPFQ 1362
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I+ R G VAY++ LP +++ +H VFHVSQL+K + P P E++ + ++LT P+R
Sbjct: 1363 ITARRGEVAYQLQLPENIAEVHPVFHVSQLKKCLRVPEEQAPLEEIHISNDLTYPEHPIR 1422
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I D K+ R K + KV W T TWE E +R YP F
Sbjct: 1423 ILDEAEKRTRSKVWRMYKVQWSNHTEAEATWESEEFLRTEYPHLF 1467
>gb|AAT39954.1| putative integrase [Solanum demissum]
Length = 1609
Score = 150 bits (380), Expect = 1e-35
Identities = 73/165 (44%), Positives = 107/165 (64%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+I+++++ + SR ++Y D+RR+ L F GD VF RV+PM GV R + KL+P++IGP++
Sbjct: 1298 VIQDRLRMAQSRHQNYADRRRRPLRFSVGDRVFFRVSPMKGVMRFGRRDKLSPRYIGPFE 1357
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I VG VAY + LP S +H VFHV L++YV D SHV+ + V++ D LT P+
Sbjct: 1358 ILRTVGEVAYELALPPAFSAIHPVFHVPMLRRYVPDESHVLQYDAVELDDRLTFVEEPIA 1417
Query: 121 IEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
I R+VK+LR + IP+VKV W E TWE E +MR+ +P F
Sbjct: 1418 ILARDVKRLRSRAIPVVKVHWRHRPVEEATWETEQEMREQFPVLF 1462
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,045,994
Number of Sequences: 2540612
Number of extensions: 10563870
Number of successful extensions: 25141
Number of sequences better than 10.0: 773
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 24267
Number of HSP's gapped (non-prelim): 810
length of query: 166
length of database: 863,360,394
effective HSP length: 118
effective length of query: 48
effective length of database: 563,568,178
effective search space: 27051272544
effective search space used: 27051272544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC135504.3