BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.16 - phase: 0 /pseudo
(343 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44110.1| gag polyprotein [Cicer arietinum] 102 2e-20
gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [... 95 3e-18
gb|AAO45751.1| gag-protease polyprotein [Cucumis melo] 92 3e-17
emb|CAC44106.1| gag polyprotein [Cicer arietinum] 92 3e-17
gb|AAQ56328.1| putative gag-pol polyprotein [Oryza sativa (japon... 91 7e-17
ref|XP_472458.1| OSJNBb0108J11.19 [Oryza sativa (japonica cultiv... 90 9e-17
emb|CAD41692.1| OSJNBb0015D13.7 [Oryza sativa (japonica cultivar... 90 9e-17
gb|AAP53008.1| putative polyprotein [Oryza sativa (japonica cult... 89 2e-16
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar... 87 7e-16
gb|AAT85123.1| putative polyprotein [Oryza sativa (japonica cult... 87 7e-16
emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa (japonica cultivar... 87 9e-16
gb|AAP20850.1| retrotransposon protein, putative, Ty3-gypsy sub-... 87 9e-16
ref|XP_474863.1| OSJNBb0022P19.7 [Oryza sativa (japonica cultiva... 87 9e-16
ref|XP_471549.1| OSJNBa0019J05.10 [Oryza sativa (japonica cultiv... 86 1e-15
ref|NP_917092.1| putative polyprotein [Oryza sativa (japonica cu... 86 1e-15
emb|CAE02978.3| OSJNBa0086B14.15 [Oryza sativa (japonica cultiva... 86 1e-15
gb|AAT85127.1| putative polyprotein [Oryza sativa (japonica cult... 86 1e-15
gb|AAT73689.1| putative polyprotein [Oryza sativa (japonica cult... 86 1e-15
gb|AAX95471.1| Retrotransposon gag protein, putative [Oryza sati... 86 1e-15
gb|AAX95470.1| Retrotransposon gag protein, putative [Oryza sati... 86 1e-15
>emb|CAC44110.1| gag polyprotein [Cicer arietinum]
Length = 277
Score = 102 bits (253), Expect = 2e-20
Identities = 51/138 (36%), Positives = 80/138 (57%)
Query: 87 RMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWW 146
R L F R +PP FKG + +W++EVE+IF ++ C KV + T+ML +A+ WW
Sbjct: 54 RGLVDFRRYNPPKFKGDEGSEKADQWIQEVEKIFDMINCQAGVKVSYATYMLLGDAEYWW 113
Query: 147 VSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVEL 206
S ++ V W F+R+FL++YFP R K +FL+L G ++V +YAAKF L
Sbjct: 114 RSARLLMGAAHEEVNWESFKRKFLDKYFPMSTRTKLGDDFLKLHQGSLTVGEYAAKFESL 173
Query: 207 AKFYPYYTAEIVEFSKCY 224
++ + ++ EI E C+
Sbjct: 174 SRHFRFFREEIDEPFMCH 191
>gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
(japonica cultivar-group)] gi|37533358|ref|NP_920981.1|
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza
sativa (japonica cultivar-group)]
gi|21327374|gb|AAM48279.1| Putative 22 kDa kafirin
cluster; Ty3-Gypsy type [Oryza sativa (japonica
cultivar-group)] gi|18767374|gb|AAL79340.1| Putative 22
kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Length = 1230
Score = 95.1 bits (235), Expect = 3e-18
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 89 LETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 148
L F + PPTF G +P ++W+ +E+ F M C++ +K+ + T+ML A +WW +
Sbjct: 71 LGEFQKLKPPTFSGTANPLEAEEWIVAMEKSFEAMGCTDKEKIIYATYMLQSSAFEWWDA 130
Query: 149 LLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVELAK 208
+ +TW +F+ F +YFPE V+ E EFLELK G+ SV +Y +F LA+
Sbjct: 131 HKKSYSER-IFITWELFKEAFYKKYFPESVKRMKEKEFLELKQGNKSVAEYEIEFSRLAR 189
Query: 209 FYPYY 213
F P +
Sbjct: 190 FAPEF 194
>gb|AAO45751.1| gag-protease polyprotein [Cucumis melo]
Length = 429
Score = 91.7 bits (226), Expect = 3e-17
Identities = 47/124 (37%), Positives = 67/124 (53%), Gaps = 1/124 (0%)
Query: 89 LETFLRNHPPTFKGRY-DPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWV 147
L F + +P TF G DP Q WL +E IFR M+C E QKV+ ML + WW
Sbjct: 60 LRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWE 119
Query: 148 SLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVELA 207
+ +L D + +TW F+ F ++F +R EFL L+ GDM+V +Y A+F L+
Sbjct: 120 TTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLS 179
Query: 208 KFYP 211
+F P
Sbjct: 180 RFAP 183
>emb|CAC44106.1| gag polyprotein [Cicer arietinum]
Length = 209
Score = 91.7 bits (226), Expect = 3e-17
Identities = 59/176 (33%), Positives = 90/176 (50%), Gaps = 12/176 (6%)
Query: 55 AGRNDPAIAAALEAVA*AVGQQPNAAAGND-----------GVRMLETFLRNHPPTFKGR 103
A RND +A A+ +A +V Q A D R LE F R +PP FKG
Sbjct: 13 ANRNDQ-MAEAMNNMAASVAAQTAAKTQRDLEKRGREIRAAESRGLEDFRRYNPPKFKGD 71
Query: 104 YDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQDGAVVTWA 163
+ +W++EVE+I +++C V + T+ML +A+ W S ++ V W
Sbjct: 72 ESSEKADQWIQEVEKIIDMIKCQAGVTVSYATYMLLGDAEYWRRSGRLLMGAAHEEVNWE 131
Query: 164 VFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVELAKFYPYYTAEIVE 219
F+R+FL++YFP R K +FL+L G M+V +YAAKF L++ + + E E
Sbjct: 132 SFKRKFLDKYFPMSTRTKLGDDFLKLHQGSMTVGEYAAKFGSLSRHFRFVREETDE 187
>gb|AAQ56328.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 964
Score = 90.5 bits (223), Expect = 7e-17
Identities = 50/150 (33%), Positives = 72/150 (47%), Gaps = 2/150 (1%)
Query: 62 IAAALEAVA*AVGQQPNAAAGNDGVRMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFR 121
IAA+ A A + Q G+ L F R PP F DP WL+ +ER
Sbjct: 22 IAASAAATATHIAQGAGGG-GHHAAGGLAEFQRTQPPVFTRSDDPLDADDWLRTIERKLT 80
Query: 122 VMQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGK 181
+++C + +K L A DWW + L ++ DG VVTWA FR F + P+ +
Sbjct: 81 LIRCPDAEKTNLAAEQLQAAAGDWWENFL-AMQPDGRVVTWAQFRDAFRAAHVPKGIMDL 139
Query: 182 NEIEFLELKHGDMSVTKYAAKFVELAKFYP 211
+ EFL L G+ SV +Y +F LA++ P
Sbjct: 140 KQCEFLSLTQGNKSVMEYLCEFNHLARYAP 169
>ref|XP_472458.1| OSJNBb0108J11.19 [Oryza sativa (japonica cultivar-group)]
gi|32488367|emb|CAE02926.1| OSJNBb0108J11.19 [Oryza
sativa (japonica cultivar-group)]
gi|32489278|emb|CAE04619.1| OSJNBa0028I23.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1516
Score = 90.1 bits (222), Expect = 9e-17
Identities = 46/126 (36%), Positives = 66/126 (51%), Gaps = 1/126 (0%)
Query: 86 VRMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDW 145
V L FLR PPTF +P WL+ +E+ ++QC++ +KV F TH L A W
Sbjct: 78 VSKLLDFLRIQPPTFSSTTNPMEANDWLRAIEKKLNLLQCNDQEKVAFATHQLQGPASAW 137
Query: 146 WVSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVE 205
W + + D VTWA F + F PE + + + EF L+ G MSVT+Y +F
Sbjct: 138 WDNYV-ATRLDATEVTWAEFCQSFRKAQIPEGIMAQQKREFRALQQGTMSVTEYLHEFNR 196
Query: 206 LAKFYP 211
LA++ P
Sbjct: 197 LARYAP 202
>emb|CAD41692.1| OSJNBb0015D13.7 [Oryza sativa (japonica cultivar-group)]
Length = 1516
Score = 90.1 bits (222), Expect = 9e-17
Identities = 46/126 (36%), Positives = 66/126 (51%), Gaps = 1/126 (0%)
Query: 86 VRMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDW 145
V L FLR PPTF +P WL+ +E+ ++QC++ +KV F TH L A W
Sbjct: 78 VSKLLDFLRIQPPTFSSTTNPMEANDWLRAIEKKLNLLQCNDQEKVAFATHQLQGPASAW 137
Query: 146 WVSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVE 205
W + + D VTWA F + F PE + + + EF L+ G MSVT+Y +F
Sbjct: 138 WDNYV-ATRLDATEVTWAEFCQSFRKAQIPEGIMAQQKREFRALQQGTMSVTEYLHEFNR 196
Query: 206 LAKFYP 211
LA++ P
Sbjct: 197 LARYAP 202
>gb|AAP53008.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532838|ref|NP_920721.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16905208|gb|AAL31078.1| putative polyprotein [Oryza
sativa]
Length = 1524
Score = 89.0 bits (219), Expect = 2e-16
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 87 RMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWW 146
++LE FLR PPTF +P WL +E+ ++QC+E +KV F TH L A WW
Sbjct: 92 KLLE-FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWW 150
Query: 147 VSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVEL 206
+ + V GA VTW FR F PE + G+ + EF L+ G +V +Y +F L
Sbjct: 151 DNYM-VTRPTGAEVTWTEFRHSFNKAQVPEGIVGQKKREFRSLQQGTKTVIEYLHEFNRL 209
Query: 207 AKFYP 211
A++ P
Sbjct: 210 ARYAP 214
>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar-group)]
gi|50922727|ref|XP_471724.1| OSJNBa0023J03.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1827
Score = 87.0 bits (214), Expect = 7e-16
Identities = 45/123 (36%), Positives = 64/123 (51%), Gaps = 1/123 (0%)
Query: 89 LETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 148
L FLR PPTF +P WL +E+ ++QC++ +KV F TH L A WW +
Sbjct: 398 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 457
Query: 149 LLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVELAK 208
+ G VTWA F R F P+ V + + EF L G+M+VT+Y +F LA+
Sbjct: 458 HM-ATRPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNMTVTEYLHEFNRLAR 516
Query: 209 FYP 211
+ P
Sbjct: 517 YAP 519
>gb|AAT85123.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1495
Score = 87.0 bits (214), Expect = 7e-16
Identities = 44/126 (34%), Positives = 65/126 (50%), Gaps = 1/126 (0%)
Query: 86 VRMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDW 145
V L FLR PPTF +P WL+ +E+ ++QC++ +KV F TH L A W
Sbjct: 78 VSKLLDFLRIQPPTFSSTTNPMEANDWLRAIEKKLNLLQCNDQEKVAFATHQLQGPASAW 137
Query: 146 WVSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVE 205
W + + V D VTW F + F PE + + + EF L+ G +VT+Y +F
Sbjct: 138 WDNYV-VTRPDATKVTWVEFCQNFRKAQIPEGIMAQQKREFRALQQGTRTVTEYLHEFNR 196
Query: 206 LAKFYP 211
LA++ P
Sbjct: 197 LARYAP 202
>emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa (japonica cultivar-group)]
gi|38347085|emb|CAE05109.2| OSJNBa0001M07.5 [Oryza
sativa (japonica cultivar-group)]
gi|50930335|ref|XP_474695.1| OSJNBa0001M07.5 [Oryza
sativa (japonica cultivar-group)]
Length = 1471
Score = 86.7 bits (213), Expect = 9e-16
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 87 RMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWW 146
++LE FLR PPTF +P WL +E+ ++QC+E +KV F TH L A WW
Sbjct: 66 KLLE-FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASVWW 124
Query: 147 VSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVEL 206
+ + V GA VTW FR F PE + + + EF L+ G +V +Y +F L
Sbjct: 125 DNYM-VTRPTGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNRL 183
Query: 207 AKFYP 211
A++ P
Sbjct: 184 ARYAP 188
>gb|AAP20850.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
gi|50916687|ref|XP_468740.1| putative retrotransposon
gag protein [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 86.7 bits (213), Expect = 9e-16
Identities = 44/126 (34%), Positives = 65/126 (50%), Gaps = 1/126 (0%)
Query: 86 VRMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDW 145
V L FLR PPTF +P WL+ +E+ ++QC++ +KV F TH L A W
Sbjct: 78 VSKLLDFLRIQPPTFSSTTNPMEANDWLRAIEKKLNLLQCNDQEKVAFATHQLQGPASVW 137
Query: 146 WVSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVE 205
W + + V D VTW F + F PE + + + EF L+ G +VT+Y +F
Sbjct: 138 WDNYV-VTRPDATKVTWVEFCQNFRKAQIPEGIMAQQKREFRALQQGTRTVTEYLHEFNR 196
Query: 206 LAKFYP 211
LA++ P
Sbjct: 197 LARYAP 202
>ref|XP_474863.1| OSJNBb0022P19.7 [Oryza sativa (japonica cultivar-group)]
gi|38346951|emb|CAE04812.2| OSJNBb0022P19.7 [Oryza
sativa (japonica cultivar-group)]
gi|32489643|emb|CAE04293.1| OSJNBa0083I11.3 [Oryza
sativa (japonica cultivar-group)]
Length = 449
Score = 86.7 bits (213), Expect = 9e-16
Identities = 43/123 (34%), Positives = 64/123 (51%), Gaps = 1/123 (0%)
Query: 89 LETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 148
L FL+ PPTF DP WL+ +E+ ++QC++ ++V F TH L A +WW S
Sbjct: 76 LSEFLKTEPPTFAIAVDPMEASDWLRTIEKKLGLIQCTDQERVGFATHQLVGPASEWWDS 135
Query: 149 LLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVELAK 208
+G +TW F F + P + + EF LK GD++VTKY +F LA+
Sbjct: 136 -YEASRPEGHTITWNEFSSVFRRSHVPAGMITLRKREFRYLKQGDLTVTKYLHEFYRLAR 194
Query: 209 FYP 211
+ P
Sbjct: 195 YAP 197
>ref|XP_471549.1| OSJNBa0019J05.10 [Oryza sativa (japonica cultivar-group)]
gi|38346425|emb|CAD40212.2| OSJNBa0019J05.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1525
Score = 86.3 bits (212), Expect = 1e-15
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 87 RMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWW 146
++LE FLR PPTF +P WL +E+ ++QC+E +KV F TH L A WW
Sbjct: 92 KLLE-FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWW 150
Query: 147 VSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVEL 206
+ + V GA VTW FR F PE + + + EF L+ G +V +Y +F L
Sbjct: 151 DNYM-VTRPAGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNRL 209
Query: 207 AKFYP 211
A++ P
Sbjct: 210 ARYAP 214
>ref|NP_917092.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1524
Score = 86.3 bits (212), Expect = 1e-15
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 87 RMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWW 146
++LE FLR PPTF +P WL +E+ ++QC+E +KV F TH L A WW
Sbjct: 92 KLLE-FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWW 150
Query: 147 VSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVEL 206
+ + V GA VTW FR F PE + + + EF L+ G +V +Y +F L
Sbjct: 151 DNYM-VTRPAGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNRL 209
Query: 207 AKFYP 211
A++ P
Sbjct: 210 ARYAP 214
>emb|CAE02978.3| OSJNBa0086B14.15 [Oryza sativa (japonica cultivar-group)]
gi|50924632|ref|XP_472673.1| OSJNBa0086B14.15 [Oryza
sativa (japonica cultivar-group)]
Length = 1516
Score = 86.3 bits (212), Expect = 1e-15
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 92 FLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVSLLP 151
FLR PPTF +P WL+ +E+ ++QC++ +KV F TH L A WW + +
Sbjct: 84 FLRIQPPTFSSTTNPMEANDWLRAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNYV- 142
Query: 152 VLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVELAKFYP 211
V D VTW F + F PE + + + EF L+ G +VT+Y +F LA++ P
Sbjct: 143 VTRPDATEVTWVEFCQNFRKALIPEGIMAQQKREFRALQQGTRTVTEYLHEFNRLARYAP 202
>gb|AAT85127.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1524
Score = 86.3 bits (212), Expect = 1e-15
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 87 RMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWW 146
++LE FLR PPTF +P WL +E+ ++QC+E +KV F TH L A WW
Sbjct: 92 KLLE-FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWW 150
Query: 147 VSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVEL 206
+ + V GA VTW FR F PE + + + EF L+ G +V +Y +F L
Sbjct: 151 DNYM-VTRPAGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNRL 209
Query: 207 AKFYP 211
A++ P
Sbjct: 210 ARYAP 214
>gb|AAT73689.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1516
Score = 86.3 bits (212), Expect = 1e-15
Identities = 44/126 (34%), Positives = 65/126 (50%), Gaps = 1/126 (0%)
Query: 86 VRMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDW 145
V L FLR PPTF +P WL+ +E+ ++QC++ +KV F TH L A W
Sbjct: 78 VSKLLDFLRIQPPTFSSTTNPMEANDWLRAIEKKLNLLQCNDREKVAFATHQLQGPASAW 137
Query: 146 WVSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVE 205
W + + D VTWA F + F PE + + + EF L+ G +VT+Y +F
Sbjct: 138 WDNYV-ATRLDATEVTWAEFCQSFRKAQIPEGIMAQQKREFRALQQGTRTVTEYLHEFNR 196
Query: 206 LAKFYP 211
LA++ P
Sbjct: 197 LARYAP 202
>gb|AAX95471.1| Retrotransposon gag protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 1441
Score = 86.3 bits (212), Expect = 1e-15
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 87 RMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWW 146
++LE FLR PPTF +P WL +E+ ++QC+E +KV F TH L A WW
Sbjct: 92 KLLE-FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWW 150
Query: 147 VSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVEL 206
+ + V GA VTW FR F PE + + + EF L+ G +V +Y +F L
Sbjct: 151 DNYM-VTRPAGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNRL 209
Query: 207 AKFYP 211
A++ P
Sbjct: 210 ARYAP 214
>gb|AAX95470.1| Retrotransposon gag protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 1441
Score = 86.3 bits (212), Expect = 1e-15
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 87 RMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWW 146
++LE FLR PPTF +P WL +E+ ++QC+E +KV F TH L A WW
Sbjct: 92 KLLE-FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWW 150
Query: 147 VSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVEL 206
+ + V GA VTW FR F PE + + + EF L+ G +V +Y +F L
Sbjct: 151 DNYM-VTRPAGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNRL 209
Query: 207 AKFYP 211
A++ P
Sbjct: 210 ARYAP 214
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.355 0.158 0.577
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,529,655
Number of Sequences: 2540612
Number of extensions: 18392673
Number of successful extensions: 89979
Number of sequences better than 10.0: 570
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 88643
Number of HSP's gapped (non-prelim): 938
length of query: 343
length of database: 863,360,394
effective HSP length: 129
effective length of query: 214
effective length of database: 535,621,446
effective search space: 114622989444
effective search space used: 114622989444
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 75 (33.5 bits)
Medicago: description of AC135504.16