BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.12 - phase: 0
(179 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 167 1e-40
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 167 1e-40
ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cu... 166 3e-40
dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|983838... 160 1e-38
dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris] 160 1e-38
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 160 1e-38
ref|XP_468960.1| putative GAG-POL precursor [Oryza sativa (japon... 155 4e-37
gb|AAL76007.1| prpol [Zea mays] 155 4e-37
gb|AAP52258.1| putative retroelement [Oryza sativa (japonica cul... 155 5e-37
gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprote... 155 5e-37
gb|AAP52839.1| putative retroelement [Oryza sativa (japonica cul... 154 8e-37
ref|XP_476165.1| putative polyprotein [Oryza sativa (japonica cu... 154 8e-37
gb|AAT77305.1| putative polyprotein [Oryza sativa (japonica cult... 154 1e-36
ref|NP_909547.1| putative polyprotein [Oryza sativa (japonica cu... 153 2e-36
ref|XP_471225.1| OSJNBb0016B03.14 [Oryza sativa (japonica cultiv... 153 2e-36
emb|CAD41263.1| OSJNBb0103I08.2 [Oryza sativa (japonica cultivar... 153 2e-36
ref|NP_912595.1| putative polyprotein [Oryza sativa (japonica cu... 152 5e-36
ref|XP_476271.1| putative polyprotein [Oryza sativa (japonica cu... 151 9e-36
emb|CAD39994.3| OSJNBb0045P24.11 [Oryza sativa (japonica cultiva... 150 1e-35
gb|AAX95315.1| Integrase core domain, putative [Oryza sativa (ja... 150 2e-35
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 167 bits (423), Expect = 1e-40
Identities = 71/159 (44%), Positives = 106/159 (66%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+EG LYK G PL+KC+ E +++ ++H+G+CG H S+A KV+R G YWPT++K
Sbjct: 1628 VEGQLYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMK 1687
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
D E Y+ C CQ+ G M APP EL + WPF WGID++GP P+A G L++++VAI
Sbjct: 1688 DTEKYIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPLPRAKGDLRFVIVAI 1747
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALVI 159
Y ++WIE E +A+I + V +F +NI+ RFG+P ++
Sbjct: 1748 EYFSRWIEAEAVARITSAAVQKFVWKNIICRFGIPKEIV 1786
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 167 bits (423), Expect = 1e-40
Identities = 76/158 (48%), Positives = 103/158 (65%)
Query: 3 GTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDA 62
G LYKR F P ++CLG +E Q VLA++H+GI G H +SLA + GYYWPTM K+A
Sbjct: 652 GHLYKRSFTGPYLRCLGHSEAQYVLAELHEGIYGNHSGGRSLAHRAHSQGYYWPTMKKEA 711
Query: 63 EDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINY 122
YV CDKCQR+ + P L S+ PWPFA WG+D++ P P A Q K+L+VA +Y
Sbjct: 712 AAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQWGMDIVRPLPTAPAQKKFLLVATDY 771
Query: 123 STKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALVIS 160
+KW+E E A K K+V +F +NI+ RFG+P +I+
Sbjct: 772 FSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQTIIA 809
>ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46981243|gb|AAT07561.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1459
Score = 166 bits (420), Expect = 3e-40
Identities = 69/159 (43%), Positives = 106/159 (66%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
++G LYK G PL+KC+ E +++ ++H+GICG H +S+A KV+R G YWPT++K
Sbjct: 1086 IDGQLYKSGVTAPLLKCVTKEEGMQMVVEIHEGICGAHQAPRSVASKVIRQGIYWPTIMK 1145
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
D E Y+ C CQ+ G APP EL + WPF WGID++GP P+A G L++++VAI
Sbjct: 1146 DTEQYIKTCRACQKVGSSSKAPPKELQPIPPVWPFYRWGIDIVGPLPRAKGDLRFVIVAI 1205
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALVI 159
Y ++WIE E +A+I + + +F +NI+ RFG+P ++
Sbjct: 1206 EYFSRWIEAEAVARITSAAMQKFVWKNIICRFGIPKEIV 1244
>dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|9838386|ref|NP_063998.1|
hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 160 bits (406), Expect = 1e-38
Identities = 72/158 (45%), Positives = 103/158 (64%)
Query: 2 EGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKD 61
+G LYKR PL++C +E + + +GICG H+ K+L+ +V+R G YWPTM+KD
Sbjct: 388 QGQLYKRSDSYPLLRCTSESEKLPAMEEAPEGICGNHIGGKALSHEVMRRGNYWPTMVKD 447
Query: 62 AEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAIN 121
YV CDKCQ+ + P +L +++P PFA WG+D+LGPF A+G KYL+VA++
Sbjct: 448 CLRYVKKCDKCQKFAPVMNQPANDLCPILNPIPFAQWGMDILGPFTTASGGRKYLIVAVD 507
Query: 122 YSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALVI 159
Y TKWIE EP IKA+ V F +NI+ RFG+P ++
Sbjct: 508 YFTKWIEAEPTKFIKARQVRSFIWKNIITRFGIPQCIV 545
>dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 160 bits (406), Expect = 1e-38
Identities = 72/158 (45%), Positives = 103/158 (64%)
Query: 2 EGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKD 61
+G LYKR PL++C +E + + +GICG H+ K+L+ +V+R G YWPTM+KD
Sbjct: 388 QGQLYKRSDSYPLLRCTSESEKLPAMEEAPEGICGNHIGGKALSHEVMRRGNYWPTMVKD 447
Query: 62 AEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAIN 121
YV CDKCQ+ + P +L +++P PFA WG+D+LGPF A+G KYL+VA++
Sbjct: 448 CLRYVKKCDKCQKFAPVMNQPANDLCPILNPIPFAQWGMDILGPFTTASGGRKYLIVAVD 507
Query: 122 YSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALVI 159
Y TKWIE EP IKA+ V F +NI+ RFG+P ++
Sbjct: 508 YFTKWIEAEPTKFIKARQVRSFIWKNIITRFGIPQCIV 545
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 160 bits (406), Expect = 1e-38
Identities = 68/158 (43%), Positives = 103/158 (65%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
++G LYK+G + PL+KC+ +E +E+L ++H G+CG H+ ++L+ K LR G+YWPT ++
Sbjct: 1505 IDGILYKKGVVQPLLKCISQSEGRELLREIHSGMCGSHIGPRALSAKALRQGFYWPTHIR 1564
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
DAE+ V C CQ + P + + WP WG+DL+GP P A G K+ VVAI
Sbjct: 1565 DAEEIVKTCKACQTFSPIQSGPSALTQLIPASWPLQRWGMDLVGPMPTAQGGNKFAVVAI 1624
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALV 158
Y T+WIE +PL I ++ + +FF +NI+ RFGVP L+
Sbjct: 1625 EYFTRWIEAKPLTTITSETIRKFFWQNIVCRFGVPRLL 1662
>ref|XP_468960.1| putative GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
gi|29244665|gb|AAO73258.1| putative GAG-POL precursor
[Oryza sativa (japonica cultivar-group)]
Length = 562
Score = 155 bits (393), Expect = 4e-37
Identities = 66/155 (42%), Positives = 97/155 (62%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY+ G + PL +C+ E +E+ ++H G+CG H +++A KV R G YWPT+LK
Sbjct: 325 VSGKLYRSGVLQPLFRCISFAEGEEMAKEIHQGLCGAHQAARTVASKVFRQGVYWPTVLK 384
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
+ + C+ CQRHG AP L + WPFA WG+D++GPFP A K+++VA+
Sbjct: 385 VCVEQIKKCESCQRHGRSQAAPQYNLQPIAPIWPFARWGLDIIGPFPVARNGYKFVIVAV 444
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
Y ++WIE EPL I + V +F +NI+ RFGVP
Sbjct: 445 EYFSRWIEAEPLGAITSAAVQKFVWKNIVCRFGVP 479
>gb|AAL76007.1| prpol [Zea mays]
Length = 1317
Score = 155 bits (393), Expect = 4e-37
Identities = 73/159 (45%), Positives = 98/159 (60%), Gaps = 2/159 (1%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+EG LYK G PL+KCL E E++ ++H G+CG H+ + L KV R G+YWP
Sbjct: 942 IEGELYKHGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLGKVFRQGFYWPKAAS 1001
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSP-WPFAWWGIDLLGPFPKATGQLKYLVVA 119
DA + V C+ CQ+ P LT L+ P WP WG+DLLGP P A G L+Y+VVA
Sbjct: 1002 DAAELVQKCEGCQKCA-RDQKQPSSLTQLIQPTWPLQRWGLDLLGPLPPAQGNLRYVVVA 1060
Query: 120 INYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALV 158
+ Y +KWIE +PLA I + V +FF +NI+ RFGVP +
Sbjct: 1061 VEYFSKWIEAKPLATITSATVQKFFWQNIVCRFGVPKAI 1099
>gb|AAP52258.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531338|ref|NP_919971.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|15217253|gb|AAK92597.1| Putative retroelement [Oryza
sativa]
Length = 698
Score = 155 bits (392), Expect = 5e-37
Identities = 68/160 (42%), Positives = 98/160 (60%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY+ G + PL++C+ E +E+ ++H G+CG H +++A KV R G YWPT+LK
Sbjct: 433 VSGQLYRSGVLQPLLRCISFAEGEEMAKEIHQGLCGAHQATRTVASKVFRQGVYWPTVLK 492
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
+ V C+ CQRHG AP EL + WPFA WG+D++GPFP K+ +VAI
Sbjct: 493 VCVEQVKKCESCQRHGRSQTAPQYELQPIAPIWPFARWGLDIIGPFPVVRNGYKFAIVAI 552
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALVIS 160
Y ++WIE EPL I + V +F +N + RFGVP I+
Sbjct: 553 QYFSRWIEAEPLKAITSAAVQKFVWKNFVCRFGVPKKFIT 592
>gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprotein - maize
retrotransposon Cinful-1
Length = 1317
Score = 155 bits (392), Expect = 5e-37
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 2/159 (1%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+EG LYK G PL+KCL E E++ ++H G+CG H+ + L K+ R G+YWP
Sbjct: 942 IEGELYKHGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLGKIFRQGFYWPKAAS 1001
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSP-WPFAWWGIDLLGPFPKATGQLKYLVVA 119
DA + V C+ CQ+ P LT L+ P WP WG+DLLGP P A G L+Y+VVA
Sbjct: 1002 DAAELVQKCEGCQKCA-RDQKQPSSLTQLIQPIWPLQRWGLDLLGPLPPAQGNLRYVVVA 1060
Query: 120 INYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALV 158
+ Y +KWIE +PLA I + V +FF +NI+ RFGVP +
Sbjct: 1061 VEYFSKWIEAKPLATITSATVQKFFWQNIVCRFGVPKAI 1099
>gb|AAP52839.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532500|ref|NP_920552.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|13992677|gb|AAK51571.1| Putative retroelement [Oryza
sativa]
Length = 1497
Score = 154 bits (390), Expect = 8e-37
Identities = 65/155 (41%), Positives = 97/155 (61%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY+ G + PL++C+ + +E+ ++H G+CG H +++A KV R G YWPT+LK
Sbjct: 1165 VSGQLYRSGILQPLLRCISFAKGEEMAKEIHQGLCGAHQAARTVASKVFRQGVYWPTVLK 1224
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
+ + C+ CQRHG AP +L + WPFA WG+D++GPFP A K+ +VA+
Sbjct: 1225 VCVEQIKKCESCQRHGRSQAAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFAIVAV 1284
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
Y ++WIE EPL I + V +F NI+ RFGVP
Sbjct: 1285 EYFSRWIEAEPLGAITSAAVQKFVWENIVCRFGVP 1319
>ref|XP_476165.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48843847|gb|AAT47106.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1136
Score = 154 bits (390), Expect = 8e-37
Identities = 66/155 (42%), Positives = 97/155 (62%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY+ G + PL+ C+ E +E+ ++H G+CG H +++A KV R G YWPT+LK
Sbjct: 764 VSGQLYRSGVLQPLLCCISFAEGEEMAKEIHQGLCGAHQAARTVASKVFRQGVYWPTVLK 823
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
+ + C+ CQRHG AP +L + WPFA WG+D++GPFP A K+ +VA+
Sbjct: 824 VCVEQIKKCESCQRHGRSQTAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFTIVAV 883
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
Y ++WIE EPL I + V +F +NI+ RFGVP
Sbjct: 884 EYFSRWIEAEPLGAITSAAVQKFVWKNIVCRFGVP 918
>gb|AAT77305.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 986
Score = 154 bits (388), Expect = 1e-36
Identities = 64/155 (41%), Positives = 97/155 (62%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY+ G + PL+ C+ E +E+ ++H G+CG H +++A KV R G YWPT++K
Sbjct: 614 VSGQLYRSGVLQPLVCCISFAEGEEMAKEIHQGLCGAHQAARTMASKVFRQGLYWPTVMK 673
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
+ + C+ CQRHG AP +L + WPFA WG+D++GPFP A K+++VA+
Sbjct: 674 VCVEQIKKCESCQRHGRSQAAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFVIVAV 733
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
Y ++WIE EPL I + V +F +NI+ FGVP
Sbjct: 734 EYFSRWIEAEPLGAITSAAVQKFVWKNIICHFGVP 768
>ref|NP_909547.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|27764667|gb|AAO23092.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 658
Score = 153 bits (387), Expect = 2e-36
Identities = 66/155 (42%), Positives = 97/155 (62%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY+ G + PL++C+ E +E+ ++H G+CG H +++A KV R G YWPT+LK
Sbjct: 286 VSGQLYRSGTLQPLLRCISFAEGEEMAREIHQGLCGAHQAARTVASKVFREGVYWPTVLK 345
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
+ + C+ CQRHG AP L + WPFA WG+D++GPF A K+++VAI
Sbjct: 346 VCAEQIKKCESCQRHGRSQSAPHYNLQPIAPIWPFARWGLDIIGPFSVARNGYKFVIVAI 405
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
Y ++WIE EPL I + V +F +NI+ RFGVP
Sbjct: 406 EYFSRWIEAEPLGAITSAAVQKFVWKNIICRFGVP 440
>ref|XP_471225.1| OSJNBb0016B03.14 [Oryza sativa (japonica cultivar-group)]
gi|38347558|emb|CAD39384.2| OSJNBb0016B03.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1323
Score = 153 bits (386), Expect = 2e-36
Identities = 65/155 (41%), Positives = 97/155 (61%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY+ G + PL++C+ E +E+ ++H G+CG H +++A KV R G YWPT+LK
Sbjct: 978 VSGQLYRSGVLQPLLRCISFAEGKEMAKEIHQGLCGVHQAARTVASKVFRQGVYWPTVLK 1037
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
+ + C+ CQRHG AP +L + W FA WG+D++GPFP A K+ +VA+
Sbjct: 1038 VCVEQIKKCESCQRHGRSQTAPQYDLQPIAPVWLFASWGLDIIGPFPVARNGYKFTIVAV 1097
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
Y ++WIE EPL I + V +F +NI+ RFGVP
Sbjct: 1098 EYFSRWIEAEPLGAITSATVQKFVWKNIVCRFGVP 1132
>emb|CAD41263.1| OSJNBb0103I08.2 [Oryza sativa (japonica cultivar-group)]
gi|38344987|emb|CAE02793.2| OSJNBa0011L07.17 [Oryza
sativa (japonica cultivar-group)]
gi|50927112|ref|XP_473361.1| OSJNBa0011L07.17 [Oryza
sativa (japonica cultivar-group)]
Length = 943
Score = 153 bits (386), Expect = 2e-36
Identities = 66/159 (41%), Positives = 103/159 (64%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+EG LYK G PL+KC+ E ++ ++H+G+ G H +S+A KV+R G YWPT++K
Sbjct: 570 IEGQLYKSGVTAPLLKCVTREEGMRMVVEIHEGLSGAHQAPRSVASKVIRQGVYWPTIIK 629
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
D E Y+ C CQ+ G APP EL + F WG+D++GP P+A G L++++VAI
Sbjct: 630 DKEKYIKTCKACQKFGATSKAPPRELQPIPPVRLFYRWGLDIVGPLPRAKGDLRFVIVAI 689
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALVI 159
Y ++WIE E +A+I + +V +F +NI+ RFG+P ++
Sbjct: 690 EYFSRWIEAEAVARITSASVQKFVWKNIICRFGIPKEIV 728
>ref|NP_912595.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|13486715|dbj|BAB39950.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1579
Score = 152 bits (383), Expect = 5e-36
Identities = 66/155 (42%), Positives = 96/155 (61%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY+ G + PL++C+ E +E+ ++H G+CG H V+++A KV R G YWP +LK
Sbjct: 1217 VSGQLYRSGVLQPLLRCISFVEGKEMAKEIHQGLCGAHQAVRTVASKVFRQGVYWPIVLK 1276
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
+ + C+ CQRHG AP +L + WPFA WG D++GPFP A K+ +VA+
Sbjct: 1277 VCVEQIKKCESCQRHGRSQAAPQYDLQPIAPIWPFARWGPDIIGPFPVARNGYKFAIVAV 1336
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
Y ++WIE EPL I + V F +NI+ RFGVP
Sbjct: 1337 EYFSRWIEAEPLGAITSAAVQMFVWKNIVCRFGVP 1371
>ref|XP_476271.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46485877|gb|AAS98502.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1048
Score = 151 bits (381), Expect = 9e-36
Identities = 65/155 (41%), Positives = 97/155 (61%), Gaps = 1/155 (0%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY+ G + PL++C+ E +++ ++H G+CG H +++A KV R G YWPT+LK
Sbjct: 730 VSGQLYRSGVLQPLLRCISFAEGEQMAKEIHQGLCGAHQAARTVASKVFRQGVYWPTVLK 789
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAI 120
+ + C+ CQRHG AP +L + WPFA WG+D++GPFP A K+ +VA+
Sbjct: 790 VCVEQIK-CENCQRHGRSQAAPQYDLQPIAPVWPFARWGLDIIGPFPVARNGYKFTIVAV 848
Query: 121 NYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
Y ++WIE EPL I V +F +NI+ RFGVP
Sbjct: 849 EYFSRWIEAEPLGTITLAAVQKFVWKNIVCRFGVP 883
>emb|CAD39994.3| OSJNBb0045P24.11 [Oryza sativa (japonica cultivar-group)]
gi|50930819|ref|XP_474937.1| OSJNBb0045P24.11 [Oryza
sativa (japonica cultivar-group)]
Length = 822
Score = 150 bits (380), Expect = 1e-35
Identities = 67/156 (42%), Positives = 97/156 (61%), Gaps = 1/156 (0%)
Query: 1 MEGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLK 60
+ G LY G + PL++C+ E +E+ ++H G+CG H +++A KV R G YWPT+LK
Sbjct: 505 VSGQLYHSGVLQPLLRCISFAEGEEMAKEIHQGLCGAHQVARTVASKVFRQGVYWPTVLK 564
Query: 61 DAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKA-TGQLKYLVVA 119
+ + C+ CQRHG AP EL + WPFA WG+D++GPFP A G + +V A
Sbjct: 565 VCVEQIKKCESCQRHGRSQTAPKYELQPIAPIWPFARWGLDIIGPFPVARNGYMFAIVAA 624
Query: 120 INYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
+ Y ++WIE EPL I + V +F +NI+ RFGVP
Sbjct: 625 VEYFSRWIEAEPLGAITSTAVQKFVWKNIVCRFGVP 660
>gb|AAX95315.1| Integrase core domain, putative [Oryza sativa (japonica
cultivar-group)]
Length = 658
Score = 150 bits (379), Expect = 2e-35
Identities = 66/153 (43%), Positives = 95/153 (61%)
Query: 3 GTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDA 62
G LY+ G + L++C+ E +E+ ++H G+CG H +++A KV R G YWPTMLK
Sbjct: 293 GQLYRSGVLQLLLRCISFAEGEEMAKEIHQGLCGAHQAARTVASKVFRQGVYWPTMLKVC 352
Query: 63 EDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINY 122
+ + C+ CQRHG AP EL + WPFA WG+D++G FP A K+ +VA+ Y
Sbjct: 353 VEQIKKCESCQRHGRSQTAPQYELQPIAPIWPFAKWGLDIIGSFPVAQNGYKFAIVAVEY 412
Query: 123 STKWIEVEPLAKIKAKNVLRFFKRNILARFGVP 155
++WIEVEPL I + V +F +NI+ RF VP
Sbjct: 413 FSRWIEVEPLGAITSAAVQKFVWKNIVCRFRVP 445
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.143 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,414,283
Number of Sequences: 2540612
Number of extensions: 12468800
Number of successful extensions: 33557
Number of sequences better than 10.0: 1529
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 444
Number of HSP's that attempted gapping in prelim test: 31539
Number of HSP's gapped (non-prelim): 1669
length of query: 179
length of database: 863,360,394
effective HSP length: 120
effective length of query: 59
effective length of database: 558,486,954
effective search space: 32950730286
effective search space used: 32950730286
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 71 (32.0 bits)
Medicago: description of AC135504.12