BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135465.2 + phase: 0
(194 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK16221.1| PII protein [Medicago sativa] 370 e-101
gb|AAC78332.1| PII protein [Ricinus communis] 237 1e-61
gb|AAR14689.1| PII-like protein [Lycopersicon esculentum] 234 1e-60
emb|CAB80683.1| P II nitrogen sensing protein GLB I [Arabidopsis... 227 1e-58
gb|AAT85171.1| putative P-II nitrogen sensing protein [Oryza sat... 218 1e-55
emb|CAD33967.1| PII-like protein [Pinus pinaster] 202 4e-51
ref|NP_213073.1| nitrogen regulatory PII protein [Aquifex aeolic... 127 2e-28
gb|AAF63031.1| nitrogen metabolism regulator protein [Synechococ... 121 9e-27
emb|CAB75358.1| PII protein [Nostoc sp. PCC 7120] gi|17131411|db... 120 2e-26
emb|CAA65992.1| GlnB protein [Tolypothrix sp. PCC 7601] gi|24947... 120 2e-26
ref|ZP_00326134.1| COG0347: Nitrogen regulatory protein PII [Tri... 120 3e-26
emb|CAE21656.1| Nitrogen regulatory protein P-II [Prochlorococcu... 120 3e-26
gb|AAQ59717.1| nitrogen regulatory protein P-II-1 [Chromobacteri... 120 3e-26
sp|O30794|GLNB_NOSPU Nitrogen regulatory protein P-II (PII signa... 120 3e-26
ref|NP_681381.1| nitrogen regulatory protein P-II [Thermosynecho... 119 4e-26
ref|NP_952886.1| nitrogen regulatory protein P-II [Geobacter sul... 119 6e-26
emb|CAA66127.1| PII protein [Synechocystis sp.] gi|2494772|sp|Q5... 119 6e-26
ref|ZP_00514326.1| Nitrogen regulatory protein P-II [Crocosphaer... 118 1e-25
ref|YP_171902.1| nitrogen regulatory protein P-II [Synechococcus... 117 1e-25
pdb|1QY7|C Chain C, The Structure Of The Pii Protein From The Cy... 116 3e-25
>gb|AAK16221.1| PII protein [Medicago sativa]
Length = 194
Score = 370 bits (949), Expect = e-101
Identities = 188/194 (96%), Positives = 191/194 (97%)
Query: 1 MALIAKPNVFNGLNFHINETQFPFSSFSVIRKRFGDSSHRNVVLKSNGNASILPKIRAQN 60
M LIAKPNVFNGLNF+INETQ PFSSFSVIRKRFGDSSHRNVVL+SNGNAS+LPKIRAQN
Sbjct: 1 MTLIAKPNVFNGLNFNINETQIPFSSFSVIRKRFGDSSHRNVVLRSNGNASVLPKIRAQN 60
Query: 61 LPDYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEF 120
LPDYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEF
Sbjct: 61 LPDYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEF 120
Query: 121 SEDNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQ 180
SEDNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQ
Sbjct: 121 SEDNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQ 180
Query: 181 AERMAGGLTDALSV 194
AERMAGGLTDAL V
Sbjct: 181 AERMAGGLTDALYV 194
>gb|AAC78332.1| PII protein [Ricinus communis]
Length = 197
Score = 237 bits (605), Expect = 1e-61
Identities = 124/188 (65%), Positives = 146/188 (76%), Gaps = 2/188 (1%)
Query: 5 AKPNVFNGLNFHINETQFPFSSFSVI--RKRFGDSSHRNVVLKSNGNASILPKIRAQNLP 62
AK + L+ + + +FP FS+ R SH N +K A ++P I AQ+ P
Sbjct: 5 AKLGLLTPLHSNNIKKEFPVFDFSLFCPELRHSRFSHFNTAVKRVRYAPVVPVINAQSSP 64
Query: 63 DYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSE 122
DY+P++KFYKVEAILRPWR+ QVSS LLK+GIRGVTVSDV+GFGAQGGS ERQGGSEFSE
Sbjct: 65 DYIPDAKFYKVEAILRPWRVSQVSSALLKIGIRGVTVSDVRGFGAQGGSTERQGGSEFSE 124
Query: 123 DNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQAE 182
D FVAKVKMEIVV KDQVE VI KI+E ARTGEIGDGKIFL+PVSDVIR+RTGERG++AE
Sbjct: 125 DKFVAKVKMEIVVSKDQVEDVIEKIIEEARTGEIGDGKIFLLPVSDVIRVRTGERGDKAE 184
Query: 183 RMAGGLTD 190
RM GG +D
Sbjct: 185 RMTGGRSD 192
>gb|AAR14689.1| PII-like protein [Lycopersicon esculentum]
Length = 199
Score = 234 bits (597), Expect = 1e-60
Identities = 125/175 (71%), Positives = 140/175 (79%), Gaps = 4/175 (2%)
Query: 20 TQFP-FSSFSVIRKRFGDSSHRNVVLKSNGNASILPKIRAQNLPDYVPESKFYKVEAILR 78
+QFP F+S +V++ +F S + K NA P IRAQN PD+VP++KFYKVEAILR
Sbjct: 23 SQFPHFTSITVVQPKFFPSQ---LTFKRCQNAPSFPIIRAQNSPDFVPDAKFYKVEAILR 79
Query: 79 PWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKMEIVVRKD 138
PWRI QVSS LLKMGIRGVTVSDV+GFGAQGG ERQ GSEFSED FVAKVKMEIVV KD
Sbjct: 80 PWRIQQVSSALLKMGIRGVTVSDVRGFGAQGGLTERQAGSEFSEDTFVAKVKMEIVVSKD 139
Query: 139 QVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQAERMAGGLTDALS 193
QVE VI KI+E ARTGEIGDGKIFL P+SDVIR+RTGERGE+AERM GG D S
Sbjct: 140 QVEGVIAKIIEEARTGEIGDGKIFLTPISDVIRVRTGERGEKAERMMGGHADMSS 194
>emb|CAB80683.1| P II nitrogen sensing protein GLB I [Arabidopsis thaliana]
gi|28950699|gb|AAO63273.1| At4g01900 [Arabidopsis
thaliana] gi|15234360|ref|NP_192099.1| P II nitrogen
sensing protein (GLB I) [Arabidopsis thaliana]
gi|4558559|gb|AAD22652.1| P II nitrogen sensing protein
GLB I [Arabidopsis thaliana] gi|3885943|gb|AAC78333.1|
PII protein [Arabidopsis thaliana]
gi|25407135|pir||D85024 P II nitrogen sensing protein
GLB I [imported] - Arabidopsis thaliana
Length = 196
Score = 227 bits (579), Expect = 1e-58
Identities = 122/190 (64%), Positives = 145/190 (76%), Gaps = 3/190 (1%)
Query: 2 ALIAKPNVFNGLNFHINETQFPFSSFSVIRKRFGDS--SHRNVVLKS-NGNASILPKIRA 58
A + KP L F+ + FS I F S S ++V KS + N+ +LP + A
Sbjct: 3 ASMTKPISITSLGFYSDRKNIAFSDCISICSGFRHSRPSCLDLVTKSPSNNSRVLPVVSA 62
Query: 59 QNLPDYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGS 118
Q DY+P+SKFYKVEAI+RPWRI QVSS LLK+GIRGVTVSDV+GFGAQGGS ER GGS
Sbjct: 63 QISSDYIPDSKFYKVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGS 122
Query: 119 EFSEDNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERG 178
EFSED FVAKVKMEIVV+KDQVE+VIN I+E ARTGEIGDGKIF++PVSDVIR+RTGERG
Sbjct: 123 EFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGERG 182
Query: 179 EQAERMAGGL 188
E+AE+M G +
Sbjct: 183 EKAEKMTGDM 192
>gb|AAT85171.1| putative P-II nitrogen sensing protein [Oryza sativa (japonica
cultivar-group)] gi|57999640|dbj|BAD88531.1| PII-like
protein [Oryza sativa (japonica cultivar-group)]
Length = 212
Score = 218 bits (554), Expect = 1e-55
Identities = 109/130 (83%), Positives = 119/130 (90%)
Query: 64 YVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSED 123
Y PES+FYKVEAILRPWR+P VSSGLL+MGIRGVTVSDV+GFGAQGGS ER GSEF+ED
Sbjct: 77 YQPESEFYKVEAILRPWRVPYVSSGLLQMGIRGVTVSDVRGFGAQGGSTERHEGSEFAED 136
Query: 124 NFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQAER 183
F+ KVKMEIVV KDQVEAV++KI+E ARTGEIGDGKIFLIPVSDVIRIRTGERGE+AER
Sbjct: 137 TFIDKVKMEIVVSKDQVEAVVDKIIEKARTGEIGDGKIFLIPVSDVIRIRTGERGERAER 196
Query: 184 MAGGLTDALS 193
MAGGL D LS
Sbjct: 197 MAGGLADKLS 206
>emb|CAD33967.1| PII-like protein [Pinus pinaster]
Length = 243
Score = 202 bits (514), Expect = 4e-51
Identities = 99/126 (78%), Positives = 113/126 (89%)
Query: 62 PDYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFS 121
PDYVPE+ FYKVEAILRPWRI V++GLLKMGIRGVTVSDV+GFG Q GS ERQ GSEFS
Sbjct: 96 PDYVPEANFYKVEAILRPWRISHVTTGLLKMGIRGVTVSDVRGFGVQAGSAERQAGSEFS 155
Query: 122 EDNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
+DNFV+KVKMEIVV KDQVEAVI+ I++ ARTGEIGDGKIF++PV+DVIR+RTGER +
Sbjct: 156 KDNFVSKVKMEIVVSKDQVEAVIDAIIDEARTGEIGDGKIFVVPVADVIRVRTGERDLKP 215
Query: 182 ERMAGG 187
ERMAGG
Sbjct: 216 ERMAGG 221
>ref|NP_213073.1| nitrogen regulatory PII protein [Aquifex aeolicus VF5]
gi|2982852|gb|AAC06473.1| nitrogen regulatory PII
protein [Aquifex aeolicus VF5]
gi|6225459|sp|O66513|GLNB_AQUAE Nitrogen regulatory
protein P-II
Length = 112
Score = 127 bits (318), Expect = 2e-28
Identities = 62/110 (56%), Positives = 87/110 (78%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
K+EAI++P+++ +V L+++GI G+TV++VKGFG Q G E G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVID-FLPKVKI 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
E+VVR + VE V+ I++TA+TG +GDGKIF+IPV DVIRIRTGERGEQA
Sbjct: 62 EVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIRIRTGERGEQA 111
>gb|AAF63031.1| nitrogen metabolism regulator protein [Synechococcus sp. PCC 7002]
Length = 112
Score = 121 bits (304), Expect = 9e-27
Identities = 60/110 (54%), Positives = 85/110 (76%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI+RP+++ +V L+ GI G+TVS+V+GFG Q G ER GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKI 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EIV+ DQV+AV++KI+ ARTGEIGDGKIF+ PV ++RIRTGE+ +A
Sbjct: 62 EIVIDDDQVDAVVDKIVAAARTGEIGDGKIFISPVDQIVRIRTGEKDLEA 111
>emb|CAB75358.1| PII protein [Nostoc sp. PCC 7120] gi|17131411|dbj|BAB74018.1|
nitrogen regulatory protein P-II [Nostoc sp. PCC 7120]
gi|17229811|ref|NP_486359.1| nitrogen regulatory protein
P-II [Nostoc sp. PCC 7120] gi|25301257|pir||AH2095
nitrogen regulatory protein P-II glnB [imported] -
Nostoc sp. (strain PCC 7120)
gi|45506724|ref|ZP_00159075.1| COG0347: Nitrogen
regulatory protein PII [Anabaena variabilis ATCC 29413]
Length = 112
Score = 120 bits (302), Expect = 2e-26
Identities = 61/110 (55%), Positives = 84/110 (75%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI+RP+++ +V L+ GI G+TVS+V+GFG Q G ER GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKV 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EIVV +QV+ V++KI+ ARTGEIGDGKIF+ PV VIRIRTGE+ +A
Sbjct: 62 EIVVEDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVIRIRTGEKNTEA 111
>emb|CAA65992.1| GlnB protein [Tolypothrix sp. PCC 7601]
gi|2494773|sp|Q47894|GLNB_FREDI Nitrogen regulatory
protein P-II (PII signal transducing protein)
Length = 112
Score = 120 bits (301), Expect = 2e-26
Identities = 60/110 (54%), Positives = 84/110 (75%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI+RP+++ +V L+ GI G+TVS+V+GFG Q G ER GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKV 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EIVV +QV+ V++KI+ ARTGEIGDGKIF+ PV V+RIRTGE+ +A
Sbjct: 62 EIVVEDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVVRIRTGEKNTEA 111
>ref|ZP_00326134.1| COG0347: Nitrogen regulatory protein PII [Trichodesmium erythraeum
IMS101]
Length = 115
Score = 120 bits (300), Expect = 3e-26
Identities = 60/110 (54%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI+RP+++ QV L+ GI G+TVS+V+GFG Q G ER GSE++ + F+ K+K+
Sbjct: 6 KVEAIIRPFKLDQVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKL 64
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
E+VV DQV+ VI+KI+ +RTGEIGDGKIF+ PV ++RIRTGE A
Sbjct: 65 EVVVEDDQVQTVIDKIINASRTGEIGDGKIFVSPVDKIVRIRTGEDNTDA 114
>emb|CAE21656.1| Nitrogen regulatory protein P-II [Prochlorococcus marinus str. MIT
9313] gi|33863748|ref|NP_895308.1| Nitrogen regulatory
protein P-II [Prochlorococcus marinus str. MIT 9313]
Length = 112
Score = 120 bits (300), Expect = 3e-26
Identities = 62/110 (56%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI+RP+++ V L+ I G+TVS+V+GFG Q G ER GSEF+ + F+ K+K+
Sbjct: 3 KVEAIVRPFKLEDVKLALVNAEIIGMTVSEVRGFGRQKGQVERYRGSEFTVE-FLQKLKV 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
E+VV D+VEAV+N I E A+TGEIGDGKIF+ PV V+RIRTGER +A
Sbjct: 62 EVVVDDDKVEAVVNAIAEAAKTGEIGDGKIFISPVDSVVRIRTGERDSKA 111
>gb|AAQ59717.1| nitrogen regulatory protein P-II-1 [Chromobacterium violaceum ATCC
12472] gi|34497500|ref|NP_901715.1| nitrogen regulatory
protein P-II-1 [Chromobacterium violaceum ATCC 12472]
Length = 112
Score = 120 bits (300), Expect = 3e-26
Identities = 61/110 (55%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI++P+++ +V L ++GI G+TVS+VKGFG Q G E G+E+ D F+ KVK+
Sbjct: 3 KVEAIIKPFKLDEVREALSEIGINGLTVSEVKGFGRQKGHTELYRGAEYVVD-FLPKVKI 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
E+V+ D VE I I+ETARTG+IGDGKIF++PV V+RIRTGE EQA
Sbjct: 62 EVVLPDDLVERAIETIVETARTGKIGDGKIFVVPVEQVVRIRTGETNEQA 111
>sp|O30794|GLNB_NOSPU Nitrogen regulatory protein P-II (PII signal transducing protein)
gi|2394288|gb|AAC26348.1| PII [Nostoc punctiforme]
gi|23127409|ref|ZP_00109280.1| COG0347: Nitrogen
regulatory protein PII [Nostoc punctiforme PCC 73102]
Length = 112
Score = 120 bits (300), Expect = 3e-26
Identities = 61/110 (55%), Positives = 84/110 (75%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI+RP+++ +V L+ GI G+TVS+V+GFG Q G ER GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKV 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EIVV +QV+ V++KI+ ARTGEIGDGKIF+ PV VIRIRTGE+ +A
Sbjct: 62 EIVVDDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVIRIRTGEKNTEA 111
>ref|NP_681381.1| nitrogen regulatory protein P-II [Thermosynechococcus elongatus
BP-1] gi|22294312|dbj|BAC08143.1| nitrogen regulatory
protein P-II [Thermosynechococcus elongatus BP-1]
Length = 112
Score = 119 bits (299), Expect = 4e-26
Identities = 61/110 (55%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI+RP+++ +V L+ GI G+TVS+V+GFG Q G ER GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKV 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EIVV +QV+ V+ KI+E ARTGEIGDGKIF+ PV VIRIRT E+ +A
Sbjct: 62 EIVVEDNQVDMVVAKIIEAARTGEIGDGKIFVTPVEQVIRIRTSEKDHEA 111
>ref|NP_952886.1| nitrogen regulatory protein P-II [Geobacter sulfurreducens PCA]
gi|39983823|gb|AAR35213.1| nitrogen regulatory protein
P-II [Geobacter sulfurreducens PCA]
Length = 112
Score = 119 bits (297), Expect = 6e-26
Identities = 59/110 (53%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI++P+++ +V L ++GI+G+TV +VKGFG Q G E G+E+ D F+ K+KM
Sbjct: 3 KVEAIIKPFKLDEVKEALNEIGIQGITVGEVKGFGRQKGHTELYRGAEYVVD-FIPKIKM 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EI+V D V V++ I + A+TG IGDGKIF+ PV +VIRIRTGERGE A
Sbjct: 62 EIIVADDIVSKVVDTIEQAAKTGRIGDGKIFVTPVEEVIRIRTGERGEDA 111
>emb|CAA66127.1| PII protein [Synechocystis sp.] gi|2494772|sp|Q55247|GLNB_SYNY3
Nitrogen regulatory protein P-II (PII signal transducing
protein) gi|40889775|pdb|1UL3|D Chain D, Crystal
Structure Of Pii From Synechocystis Sp. Pcc 6803
gi|40889774|pdb|1UL3|C Chain C, Crystal Structure Of Pii
From Synechocystis Sp. Pcc 6803 gi|40889773|pdb|1UL3|B
Chain B, Crystal Structure Of Pii From Synechocystis Sp.
Pcc 6803 gi|40889772|pdb|1UL3|A Chain A, Crystal
Structure Of Pii From Synechocystis Sp. Pcc 6803
Length = 112
Score = 119 bits (297), Expect = 6e-26
Identities = 59/110 (53%), Positives = 84/110 (75%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI+RP+++ +V L+ GI G+TVS+V+GFG Q G ER GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKI 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EIVV + QV+ V++K++ ARTGEIGDGKIF+ PV V+RIRTGE+ +A
Sbjct: 62 EIVVDEGQVDMVVDKLVSAARTGEIGDGKIFISPVDSVVRIRTGEKDTEA 111
>ref|ZP_00514326.1| Nitrogen regulatory protein P-II [Crocosphaera watsonii WH 8501]
gi|67856924|gb|EAM52164.1| Nitrogen regulatory protein
P-II [Crocosphaera watsonii WH 8501]
Length = 112
Score = 118 bits (295), Expect = 1e-25
Identities = 62/110 (56%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
KVEAI+RP+++ +V L+ GI G+TVS+V+GFG Q G ER GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKL 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EIVV DQV VI+K+ ARTGEIGDGKIF+ PV VIRIRTGE +A
Sbjct: 62 EIVVENDQVAMVIDKLRGAARTGEIGDGKIFVSPVDQVIRIRTGESDLEA 111
>ref|YP_171902.1| nitrogen regulatory protein P-II [Synechococcus elongatus PCC 6301]
gi|6137103|gb|AAF04333.1| nitrogen regulatory protein
P-II [Synechococcus sp. PCC 6301]
gi|56686160|dbj|BAD79382.1| nitrogen regulatory protein
P-II [Synechococcus elongatus PCC 6301]
gi|61224545|sp|P0A3F5|GLNB_SYNP6 Nitrogen regulatory
protein P-II (PII signal transducing protein)
gi|61224544|sp|P0A3F4|GLNB_SYNP7 Nitrogen regulatory
protein P-II (PII signal transducing protein)
gi|53763064|ref|ZP_00163590.2| COG0347: Nitrogen
regulatory protein PII [Synechococcus elongatus PCC
7942]
Length = 112
Score = 117 bits (294), Expect = 1e-25
Identities = 60/110 (54%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
K+EAI+RP+++ +V L+ GI G+TVS+V+GFG Q G ER GSE++ + F+ K+K+
Sbjct: 3 KIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKL 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EIVV QV+ VI+KI+ ARTGEIGDGKIF+ PV IRIRTGE+ A
Sbjct: 62 EIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
>pdb|1QY7|C Chain C, The Structure Of The Pii Protein From The Cyanobacteria
Synechococcus Sp. Pcc 7942 gi|37928108|pdb|1QY7|B Chain
B, The Structure Of The Pii Protein From The
Cyanobacteria Synechococcus Sp. Pcc 7942
gi|37928107|pdb|1QY7|A Chain A, The Structure Of The Pii
Protein From The Cyanobacteria Synechococcus Sp. Pcc
7942
Length = 112
Score = 116 bits (291), Expect = 3e-25
Identities = 59/110 (53%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 72 KVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKM 131
K+EAI+RP+++ +V L+ GI G+TVS+V+GFG Q G ER G+E++ + F+ K+K+
Sbjct: 3 KIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGAEYTVE-FLQKLKL 61
Query: 132 EIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQA 181
EIVV QV+ VI+KI+ ARTGEIGDGKIF+ PV IRIRTGE+ A
Sbjct: 62 EIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.137 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,514,644
Number of Sequences: 2540612
Number of extensions: 12218682
Number of successful extensions: 29600
Number of sequences better than 10.0: 370
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 28942
Number of HSP's gapped (non-prelim): 373
length of query: 194
length of database: 863,360,394
effective HSP length: 121
effective length of query: 73
effective length of database: 555,946,342
effective search space: 40584082966
effective search space used: 40584082966
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)
Medicago: description of AC135465.2