BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135464.8 - phase: 0
(559 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB84339.1| putative Ta11-like non-LTR retroelement protein [... 71 8e-11
gb|AAF18653.1| hypothetical protein [Arabidopsis thaliana] gi|15... 70 1e-10
emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana] gi|7... 65 6e-09
dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like... 62 5e-08
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript... 61 1e-07
gb|AAC26675.1| putative Ta11-like non-LTR retroelement protein [... 61 1e-07
pir||E84487 hypothetical protein At2g07670 [imported] - Arabidop... 61 1e-07
ref|NP_680626.1| hypothetical protein [Arabidopsis thaliana] 61 1e-07
gb|AAD24602.1| putative Ta11-like non-LTR retroelement protein [... 60 2e-07
emb|CAB80815.1| putative protein [Arabidopsis thaliana] gi|33193... 60 2e-07
gb|AAD17399.1| putative Ta11-like non-LTR retroelement protein [... 59 3e-07
gb|AAD17396.1| putative Ta11-like non-LTR retroelement protein [... 58 7e-07
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 58 9e-07
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 58 9e-07
gb|AAM82603.1| putative DNA/RNA binding protein [Brassica napus] 58 9e-07
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 57 2e-06
gb|AAC26677.1| putative Ta11-like non-LTR retroelement protein [... 57 2e-06
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 56 3e-06
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 55 5e-06
dbj|BAB85863.1| ORF285 [Silene latifolia] 55 5e-06
>gb|AAB84339.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|7487606|pir||T00813 probable Ta11-like
non-LTR retroelement protein [imported] - Arabidopsis
thaliana gi|15227381|ref|NP_181688.1| hypothetical
protein [Arabidopsis thaliana]
Length = 418
Score = 71.2 bits (173), Expect = 8e-11
Identities = 60/243 (24%), Positives = 103/243 (41%), Gaps = 26/243 (10%)
Query: 10 FEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQ-----VWVRLHEL 64
F+F+F S +D+ + LK G+ EW ++ T VW+RL +
Sbjct: 77 FQFFFKSEDDLLEI-------LKTGVWTQDEWCVVMERWIEKSTEEYLMFLPVWMRLRNI 129
Query: 65 PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHI--FNEVMIERTG 122
P Y+ T+K+IAS +G L ++ + Y RV V +D+ + F E+ + TG
Sbjct: 130 PVNYYTQDTIKKIASCVGKVLKVELDLEKSQAQDYIRVQVIIDVRNPLRNFKEIQLP-TG 188
Query: 123 FSFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIISQK--------- 173
S+ YER+ C C + H C P K ++D +++ +K
Sbjct: 189 EIVSVTFDYERIRKRCFLCQRLTHEKGDCDSGRPGKSSVMDGFQRSFFEKKEDKEKSDLR 248
Query: 174 -PQPPKWLPRDNLDGIGSSKAFEAPVGNNNAESIPTT-HKVATKLPVQTDLTESADAQHS 231
PQ LP +LD I + A N+ + +T +V + V+ E+ ++Q
Sbjct: 249 FPQSNHPLPSSDLDRIEGNSALSTKTNLLNSRIMSSTPSEVQSTGLVEKIRKEAKESQEH 308
Query: 232 DSA 234
+ A
Sbjct: 309 EKA 311
>gb|AAF18653.1| hypothetical protein [Arabidopsis thaliana]
gi|15226168|ref|NP_178215.1| hypothetical protein
[Arabidopsis thaliana] gi|25410873|pir||A84420
hypothetical protein At2g01050 [imported] - Arabidopsis
thaliana
Length = 515
Score = 70.5 bits (171), Expect = 1e-10
Identities = 44/148 (29%), Positives = 67/148 (44%), Gaps = 4/148 (2%)
Query: 4 ELGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHE 63
+L +F F E+ + + G + L + +WS F VWVRL
Sbjct: 113 DLPRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSN 172
Query: 64 LPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGF 123
+P Y+ L EIA +G PL +D T N G +ARV ++++L+K + V+I +
Sbjct: 173 IPYNYYHRCLLMEIARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRY 232
Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSC 151
+ YE L C+ CG GH SC
Sbjct: 233 F----VAYEGLSKICSSCGIYGHLVHSC 256
>emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana]
gi|7268308|emb|CAB78602.1| hypothetical protein
[Arabidopsis thaliana] gi|7485201|pir||H71420
hypothetical protein - Arabidopsis thaliana
Length = 655
Score = 65.1 bits (157), Expect = 6e-09
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 4 ELGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHE 63
+L +F F ED + G + +L + WS +F VWVR+
Sbjct: 128 DLPRQFFMVRFEVEEDYMMALTGGPWRVLGSILMVQAWSPEFNPLRDVIETTPVWVRVAN 187
Query: 64 LPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGF 123
LP ++ + L IA+ +G P+ +D T + G +ARV V+++L + +++ +
Sbjct: 188 LPVTFYHNEILLGIAAGLGKPIKVDLTTLRKERGRFARVCVEVNLKNPLKGTLVVNGERY 247
Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSC 151
++YE L C+ CG GH ++C
Sbjct: 248 F----VSYEGLQTICSLCGIYGHTVNNC 271
Score = 42.4 bits (98), Expect = 0.040
Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 1/80 (1%)
Query: 436 LWALWSKDL-SITVLFVSDQCIALQISCHQSIVYIAAVYASTYYLKRRQLWADLTHIQEH 494
LW LW + ++ ++ + Q I +I V++ VYA+ +R LW +L
Sbjct: 575 LWLLWRSSVGNVEIVSSTSQFIHAKILTGLESVHLVVVYAAPSVSRRSGLWNELREAVSG 634
Query: 495 FVGPWLFVGDFNAVLGAHEK 514
GP + GDFN +L E+
Sbjct: 635 LDGPLIIGGDFNTILRVDER 654
>dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 591
Score = 62.0 bits (149), Expect = 5e-08
Identities = 35/148 (23%), Positives = 64/148 (42%), Gaps = 4/148 (2%)
Query: 4 ELGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHE 63
+L +F F E+ + + G L + WS +F +WVR+ +
Sbjct: 113 DLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIAD 172
Query: 64 LPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGF 123
+P ++ L +A +G PL +D + G +ARV V++DL + + +++ +
Sbjct: 173 MPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRY 232
Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSC 151
+ YE L C+ CG GH +C
Sbjct: 233 ----YVAYEGLTNICSKCGIYGHLVHNC 256
>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 855
Score = 60.8 bits (146), Expect = 1e-07
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 9 YFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHELPQEY 68
+F F ++ S + G L + WS +F T +WVRL +P
Sbjct: 93 FFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEITTTPIWVRLMNIPLSL 152
Query: 69 WMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGFSFSIE 128
+ L IA ++G P+ +D T + +AR+ +++DL+K + +++ +
Sbjct: 153 YHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVDLAKPLKGTLLLNGERYF---- 208
Query: 129 ITYERLPAFCTHCGNIGHHNSSC 151
++YE L C+ CG GH +C
Sbjct: 209 VSYEGLANICSRCGMYGHLIHTC 231
>gb|AAC26675.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|15226160|ref|NP_178817.1| zinc knuckle
(CCHC-type) family protein [Arabidopsis thaliana]
gi|25371846|pir||D84488 probable Ta11-like non-LTR
retroelement protein [imported] - Arabidopsis thaliana
Length = 409
Score = 60.8 bits (146), Expect = 1e-07
Identities = 38/147 (25%), Positives = 61/147 (40%), Gaps = 4/147 (2%)
Query: 5 LGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHEL 64
L +F F ED + + +L + WS DF VWVR+ L
Sbjct: 66 LPRSFFMVKFDLEEDYLAAAIGDPWRVLGSILMIRAWSPDFNPIRDEIVTTLVWVRISNL 125
Query: 65 PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGFS 124
P Y+ + L I +G P+ ++ + H+ARV V ++L + + V++ +
Sbjct: 126 PVNYYHETILTAIVEGLGKPIKVNLTILRKERAHFARVCVKVNLKQPLKGTVVVNGECYY 185
Query: 125 FSIEITYERLPAFCTHCGNIGHHNSSC 151
S YE L C+ CG GH +C
Sbjct: 186 AS----YEGLNVICSLCGVFGHLAGAC 208
>pir||E84487 hypothetical protein At2g07670 [imported] - Arabidopsis thaliana
Length = 913
Score = 60.8 bits (146), Expect = 1e-07
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 9 YFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHELPQEY 68
+F F ++ S + G L + WS +F T +WVRL +P
Sbjct: 93 FFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEITTTPIWVRLMNIPLSL 152
Query: 69 WMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGFSFSIE 128
+ L IA ++G P+ +D T + +AR+ +++DL+K + +++ +
Sbjct: 153 YHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVDLAKPLKGTLLLNGERYF---- 208
Query: 129 ITYERLPAFCTHCGNIGHHNSSC 151
++YE L C+ CG GH +C
Sbjct: 209 VSYEGLANICSRCGMYGHLIHTC 231
>ref|NP_680626.1| hypothetical protein [Arabidopsis thaliana]
Length = 223
Score = 60.8 bits (146), Expect = 1e-07
Identities = 44/185 (23%), Positives = 79/185 (41%), Gaps = 8/185 (4%)
Query: 4 ELGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHE 63
+L +F F E+ + + + L + W +F VW+RL
Sbjct: 2 DLPRQFFMIRFELQEEYLAALTGDPWRVFGSNLTVQAWLPEFDPLRDVIATTPVWIRLTN 61
Query: 64 LPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGF 123
+P ++ L IA +G P +D+ T N +ARV V+M+L+K + +M+ +
Sbjct: 62 VPVNFYHPSILMSIAGGLGKPFKVDTMTLNHERARFARVCVEMNLAKPLKGTIMVNGDRY 121
Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIISQKPQP-PKWLPR 182
+ YE L C+ CG GH +C V + + +T +S+ P+ + +P+
Sbjct: 122 ----YVAYEGLTNICSTCGLYGHLVHTC---PRVVQEQSKEGPRTDVSEGPRDFSQGVPK 174
Query: 183 DNLDG 187
N G
Sbjct: 175 KNQSG 179
>gb|AAD24602.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|25411731|pir||A84543 probable Ta11-like
non-LTR retroelement protein [imported] - Arabidopsis
thaliana gi|15227280|ref|NP_179260.1| hypothetical
protein [Arabidopsis thaliana]
Length = 240
Score = 60.1 bits (144), Expect = 2e-07
Identities = 38/167 (22%), Positives = 73/167 (42%), Gaps = 21/167 (12%)
Query: 10 FEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQ-----VWVRLHEL 64
F+F++ S +D+ + LK G+ EW ++ +W+RL +
Sbjct: 77 FQFFYKSNDDLLEI-------LKTGVWTQDEWCVIMDRWVEKPPEEYLMILPIWIRLRNI 129
Query: 65 PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIE-RTGF 123
P Y+ + T+K+IA +G + ++ + Y RV V++D+ + N ++ +G
Sbjct: 130 PVNYYTEETIKKIAGCVGQVVKVELDLEKSQAQDYVRVQVNLDVRNPLRNSKSVQVPSGE 189
Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTII 170
S+ YER+ C C + H + C P ++KK + I
Sbjct: 190 VVSVTFDYERIRKRCFFCQRLTHDKADC--------PYVNKKIRIFI 228
>emb|CAB80815.1| putative protein [Arabidopsis thaliana] gi|3319367|gb|AAC28216.1|
T24M8.9 gene product [Arabidopsis thaliana]
gi|7487408|pir||T01872 hypothetical protein T24M8.9 -
Arabidopsis thaliana
Length = 463
Score = 59.7 bits (143), Expect = 2e-07
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 40 EWSKDFTARTQRQTHAQVWVRLHELPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHY 99
+W T T A +W+ L +P +++ D L+ IAS +G P + +T N+
Sbjct: 189 KWEPGLTPVKPELTTAPIWLELRHVPFQFFNDNGLEHIASLVGEPKFLHPSTANKTNLEV 248
Query: 100 ARVLVDMDLSKHIFNEVMIE-RTGFSFSIEITYERLPAFCTHCGNIGHHNSSCR 152
ARV +D K + V + +G IE++ +P C HC +GH C+
Sbjct: 249 ARVFTIIDPRKPLPEAVNVHFASGDIRRIEVSSPWMPPVCAHCKEVGHSLRKCK 302
>gb|AAD17399.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|25411645|pir||D84530 probable Ta11-like
non-LTR retroelement protein [imported] - Arabidopsis
thaliana gi|15226557|ref|NP_179157.1| hypothetical
protein [Arabidopsis thaliana]
Length = 589
Score = 59.3 bits (142), Expect = 3e-07
Identities = 39/168 (23%), Positives = 74/168 (43%), Gaps = 19/168 (11%)
Query: 5 LGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHEL 64
LG+ F+F+F S D++ V +K + L W T WVR +
Sbjct: 85 LGDARFQFFFESEVDLQKVLNKRPCHFNKWSFALERWEPH--VGTSFPNIMTFWVRTEGI 142
Query: 65 PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHI-FNEVMIERTGF 123
P E+W + L+ +++G +D + R+L+ + + FN+ +G
Sbjct: 143 PAEFWDEEVLRNFGNSLGLVRRVDPSK--------GRILISVTADVPLRFNKNAQLPSGT 194
Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIIS 171
++++YE+L +C++C I H C PL+D ++K ++S
Sbjct: 195 VVKVKLSYEKLFRWCSYCRRICHELEQC--------PLLDAEQKAVLS 234
>gb|AAD17396.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|25411641|pir||A84530 probable Ta11-like
non-LTR retroelement protein [imported] - Arabidopsis
thaliana gi|15226543|ref|NP_179154.1| zinc finger
protein, putative [Arabidopsis thaliana]
Length = 483
Score = 58.2 bits (139), Expect = 7e-07
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 4/186 (2%)
Query: 5 LGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHEL 64
L N F+F F S D+ V +KG + + W ++ R + +WV++ +
Sbjct: 69 LNNERFQFIFDSEHDLEEVLAKGVHTFNDWSIVVDRWYENPPDDYLR--YMLLWVQIWNI 126
Query: 65 PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIE-RTGF 123
P Y + + ++ IG + + + + RV V D+S+ + ++ R G
Sbjct: 127 PVNYNTAKAITKLGDLIGEVKEVVFNPELKQIREFVRVKVLFDVSRPLRRSKVVNFRNGG 186
Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIISQK-PQPPKWLPR 182
S ++ YER+ C C + H C L ++ L ++K II K PP
Sbjct: 187 SATVNFHYERIQKRCYECQRLTHEKDVCPILVKARQDLATARRKGIIIPKATTPPILKES 246
Query: 183 DNLDGI 188
D L G+
Sbjct: 247 DPLFGV 252
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 57.8 bits (138), Expect = 9e-07
Identities = 32/102 (31%), Positives = 45/102 (43%)
Query: 432 LQPNLWALWSKDLSITVLFVSDQCIALQISCHQSIVYIAAVYASTYYLKRRQLWADLTHI 491
L L W K LSI V+ + + L + Y++ +Y +R LW L +
Sbjct: 426 LSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKNFNFYLSCIYGHPIPSERHHLWEKLQRV 485
Query: 492 QEHFVGPWLFVGDFNAVLGAHEKCGRRPPPPLSCLDFLNWSN 533
H GPW+ GDFN +L +EK G R S +F N N
Sbjct: 486 SAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMIN 527
Score = 50.8 bits (120), Expect = 1e-04
Identities = 33/146 (22%), Positives = 60/146 (40%), Gaps = 3/146 (2%)
Query: 7 NGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHELPQ 66
N F+F F S E + +V +G + +L + W+ D W+++ E+P
Sbjct: 75 NRRFQFIFPSEESLDTVLRRGPWSFADRMLVVERWTPDMDPLVLN--FIPFWIQVREIPL 132
Query: 67 EYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHI-FNEVMIERTGFSF 125
++ + IA ++G +D + R+ + D++ + F G +
Sbjct: 133 QFLNLEVIDNIAGSLGERKAVDFDPFTTTRVEFVRIQIKWDVNHPLRFQRNYQFSLGVNT 192
Query: 126 SIEITYERLPAFCTHCGNIGHHNSSC 151
+ YERL FC CG + H SC
Sbjct: 193 VLSFYYERLRGFCDVCGRMTHDAGSC 218
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 57.8 bits (138), Expect = 9e-07
Identities = 65/291 (22%), Positives = 115/291 (39%), Gaps = 27/291 (9%)
Query: 236 VSAAIHHSDDEDNLSAAAHHSD----DVSPQNVTKDPLDFEFIPVMPDDINKATLPSTSI 291
+S + SDD+D HH D D+S + + IP + ++K
Sbjct: 30 LSNPVETSDDDDADDDDDHHDDNKEHDISDTDTLQTVDPATLIPGLQSSLSKGNQRQ--- 86
Query: 292 HVLEETADTAEVP--IEDTTAAAEPLFTDVMALEAQTQTNRTDVELIAARVASLQHHEIP 349
+++ +D VP IEDT E L L A+ +TD + + +
Sbjct: 87 --VQKLSDGYSVPCVIEDTDLTVERL----RYLHAKLAGVKTDAPVEKDLL-------LE 133
Query: 350 ISKNVQHDLDLW----ARIREYDQRMAEEGFTQVLSKKQQKDAKKASLRKGFVQHPRKGY 405
S N Q++ R+ E Q++ VLS+ +K K S + H
Sbjct: 134 SSDNAQNEFVFMKRKRVRLEEMYQQVEAADEMGVLSQLCKKGRKTESAGSCSI-HDGLET 192
Query: 406 SSSLILMNILFWNIRVTKYFLNVRDNLQPNLWALWSKDLSITVLFVSDQCIALQISCHQS 465
+ + L +++ + L +W ++S++++ ++ I ++ +
Sbjct: 193 LNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTFNNK 252
Query: 466 IVYIAAVYASTYYLKRRQLWADLTHIQEHFVGPWLFVGDFNAVLGAHEKCG 516
Y++ VY +R QLW L HI ++ WL VGDFN +L EK G
Sbjct: 253 SFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIG 303
>gb|AAM82603.1| putative DNA/RNA binding protein [Brassica napus]
Length = 306
Score = 57.8 bits (138), Expect = 9e-07
Identities = 60/320 (18%), Positives = 124/320 (38%), Gaps = 31/320 (9%)
Query: 40 EWSKDFTARTQRQTHAQVWVRLHELPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHY 99
+W + VW+ H +P +++ + L+ IA +G PL + AT N
Sbjct: 13 KWKPGLQPEIPELSSVPVWLDFHNVPPQFYSEEGLEHIAGTLGHPLFLHPATANMSNLEV 72
Query: 100 ARVLVDMDLSKHIFNEVMIE-RTGFSFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVK 158
ARV +D +K + V + +G +E++ LP C HC +GH +C +
Sbjct: 73 ARVFTIIDPTKPLPEAVNVRFDSGHIERVEVSSPWLPPTCDHCKEVGHSIKNC-----LT 127
Query: 159 EPLIDKKKKTIISQKPQPPKWLPRDNLDGIGSSKAFEAPVGNNNAESIPTTHKVATKLPV 218
P+ K+ + PK + + + G KV T P
Sbjct: 128 APITCSLCKSTAHKLEDCPK-----------AKRQTDTKDGERKKRKTRKKTKV-TDPPA 175
Query: 219 QTDLTESADAQHSDSANVSAAIHHSDDEDNLSAAAHHSDDVSPQNVTKDPLDFEFIPVMP 278
T+ T + ++ + + + D+ N++A DD +++T++ + + ++
Sbjct: 176 DTEQTAAVIVENEGNIIIDIGL----DKINITA-----DDSRERSITEEVQNSDSDALVS 226
Query: 279 DDINKATLPSTSIHVLEETADTAEVPIEDTTAAAEPLFTDVMALEA----QTQTNRTDVE 334
LPS E +++ E + + + F + ++ + + Q + +E
Sbjct: 227 SGSEIEELPSAEESSQESSSEEEEGSSDSSNPEEDSGFEEALSKKTKKMQRKQVRKAALE 286
Query: 335 LIAARVASLQHHEIPISKNV 354
L R L+ + S+N+
Sbjct: 287 LRLQREKELKRSKSSKSRNL 306
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410913|pir||B84426 hypothetical protein
At2g01550 [imported] - Arabidopsis thaliana
Length = 1449
Score = 57.0 bits (136), Expect = 2e-06
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 21 RSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHA-QVWVRLHELPQEYWMDRTLKEIAS 79
R ++G N+ + + +WS F TQ + Q+W+ L ++P + D+ L+ +AS
Sbjct: 173 RRALNRGMWNIMDLPMVVSKWSP-FAEETQPAMKSIQLWITLTDVPPSLFTDKGLEFLAS 231
Query: 80 AIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMI---ERTGFSFSIEITYERLPA 136
A+G P+ + T++ A++LV+ DL+K + E + E + I+ +Y LP
Sbjct: 232 AVGKPIRLHPKTESCSSFDEAQLLVEADLTKELPKEFVFTGEEEGELAAVIKYSYPWLPP 291
Query: 137 FCTHCGNIGHHNSSC 151
C+ C GH SC
Sbjct: 292 RCSCCDKWGHLRDSC 306
Score = 52.0 bits (123), Expect = 5e-05
Identities = 28/92 (30%), Positives = 48/92 (51%), Gaps = 5/92 (5%)
Query: 427 NVRDNLQPNLWALWSKDLSITVLFVSDQCI--ALQISCHQSIVYIAAVYASTYYLKRRQL 484
N N + LW +W +++ T + SDQ I ++++ + + + VYAS + +R+ L
Sbjct: 475 NYEFNRRGRLWVVWRENVRFTPFYKSDQLITCSVKLESQEEEFFYSFVYASNFAEERKIL 534
Query: 485 WADL-THIQEHFV--GPWLFVGDFNAVLGAHE 513
W DL H+ + PW+ GDFN +L E
Sbjct: 535 WNDLRDHMDSPIIRDKPWIIFGDFNEILDMDE 566
>gb|AAC26677.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|25411328|pir||F84488 probable Ta11-like
non-LTR retroelement protein [imported] - Arabidopsis
thaliana gi|15226162|ref|NP_178819.1| zinc knuckle
(CCHC-type) family protein [Arabidopsis thaliana]
Length = 530
Score = 57.0 bits (136), Expect = 2e-06
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 27/250 (10%)
Query: 26 KGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHELPQEYWMDRTLKEIASAIGTPL 85
+G ++ L+ + WS T + VWV L +P + + IAS +G P+
Sbjct: 210 RGLWHVDDCLMFVAPWSTVNTFDLPEISTIPVWVTLKNIPNRLYSILGISHIASGLGAPM 269
Query: 86 LIDSATQNRVFGHYARVLVDMDLSKHIFNEVM-IERTGFSFSIEITYERLPAFCTHCGNI 144
+ A +LV+++LSK + +++ G + + Y +PA C CG +
Sbjct: 270 ATYKPRLDPSLMSEANILVEVELSKAFPPRIAAVDKKGNISMVNVEYAWIPAKCGKCGQL 329
Query: 145 GHHNSSCRWLHPVKEPLIDKKKKTIISQKPQPPKWLPRDNLDGIGSSKAFEAPVGNNNAE 204
GH S C +K L +K I+S++ P A V +A
Sbjct: 330 GHKASRC-----MKPHLAHEKVTEIVSEEIITP------------------AIVSLASAT 366
Query: 205 SIPTTHKVATKLPVQTDLTESADAQHSDSANVSAAIHHSDDEDNLSAAAHHSDDVSPQNV 264
++ + + TK P+ +T S Q ++ A D+DN + A +V + V
Sbjct: 367 NLVSPITLQTKTPIDVPITNS-KIQIDTVFDIEAG--PIQDKDNCTGVADCFTNVEAEVV 423
Query: 265 TKDPLDFEFI 274
T++ E +
Sbjct: 424 TEETCTVESV 433
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|7488317|pir||T01610 RNA-directed DNA polymerase
homolog At2g18820 - Arabidopsis thaliana
Length = 1412
Score = 55.8 bits (133), Expect = 3e-06
Identities = 30/92 (32%), Positives = 46/92 (49%), Gaps = 5/92 (5%)
Query: 427 NVRDNLQPNLWALWSKDLSITVLFVSDQCIALQISC-HQSIVYIAA-VYASTYYLKRRQL 484
N N +W +WS + + V+F S Q I + H + +I + +YAS + +R++L
Sbjct: 362 NYEFNRLGRIWVVWSSSVQLQVIFKSSQMIVCLVRVEHYDVEFICSFIYASNFVEERKKL 421
Query: 485 WADLTHIQEHFV---GPWLFVGDFNAVLGAHE 513
W DL ++Q PWL GDFN L E
Sbjct: 422 WQDLHNLQNSVAFRNKPWLLFGDFNETLKMEE 453
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 55.5 bits (132), Expect = 5e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 439 LWSKDLSITVLFVSDQCIALQISCHQSIVYIAAVYASTYYLKRRQLWADLTHIQEHFVGP 498
+W ++S++++ ++ I ++ + Y++ VY +R QLW L HI ++
Sbjct: 452 MWKNNVSLSLISQDERLIDSHVTFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAE 511
Query: 499 WLFVGDFNAVLGAHEKCG 516
WL VGDFN +L EK G
Sbjct: 512 WLLVGDFNEILSNAEKIG 529
Score = 42.4 bits (98), Expect = 0.040
Identities = 33/158 (20%), Positives = 66/158 (40%), Gaps = 4/158 (2%)
Query: 5 LGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHEL 64
+ G +F F S E M V +G + +L + W + + + WV++ +
Sbjct: 73 IDKGRVQFKFQSEEAMNLVLRRGPWSFNDWMLSIHRWYPNLSEAEMKII--PFWVQITGI 130
Query: 65 PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHI-FNEVMIERTGF 123
P + + + + + +G +D + G + RV ++ +L + F G
Sbjct: 131 PLLFLTNAMARCVGNRLGHVADVDFDENSNHTG-FVRVRINWNLDDPLRFQRNFQFADGE 189
Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPL 161
+ I+ +ERL FCT CG++ H C ++P+
Sbjct: 190 NTVIKFRFERLRNFCTKCGSLKHDIKVCTLSFDNEDPV 227
>dbj|BAB85863.1| ORF285 [Silene latifolia]
Length = 285
Score = 55.5 bits (132), Expect = 5e-06
Identities = 31/107 (28%), Positives = 54/107 (49%), Gaps = 2/107 (1%)
Query: 41 WSKDFTARTQRQTHAQVWVRLHELPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYA 100
W+ + + T VWVRL LP ++W + IA +G + D AT++R Y
Sbjct: 178 WTPNESLTKAEITVVPVWVRLLNLPLKFW-GNCIPWIAGLLGDYVRCDGATEDRTRLAYT 236
Query: 101 RVLVDMDLSKHIFNEV-MIERTGFSFSIEITYERLPAFCTHCGNIGH 146
RVL+D+ K +V ++ +G ++++ ++ P CT G +GH
Sbjct: 237 RVLIDVTFGKSAPKDVKFLDESGELITLKVEFKWNPILCTDFGGVGH 283
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 992,215,539
Number of Sequences: 2540612
Number of extensions: 41843836
Number of successful extensions: 112978
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 112770
Number of HSP's gapped (non-prelim): 255
length of query: 559
length of database: 863,360,394
effective HSP length: 133
effective length of query: 426
effective length of database: 525,458,998
effective search space: 223845533148
effective search space used: 223845533148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)
Medicago: description of AC135464.8