BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135464.5 - phase: 0 /pseudo
(1087 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 266 4e-69
emb|CAD41368.2| OSJNBa0088A01.7 [Oryza sativa (japonica cultivar... 184 2e-44
gb|AAX95233.1| retrotransposon protein, putative, unclassified [... 183 2e-44
gb|AAX95130.1| retrotransposon protein, putative, unclassified [... 183 2e-44
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 179 4e-43
gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [B... 177 1e-42
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 174 1e-41
gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cult... 173 2e-41
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 173 3e-41
ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (j... 172 5e-41
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 171 9e-41
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 171 9e-41
gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (jap... 171 2e-40
gb|AAP53623.1| putative non-LTR retroelement reverse transcripta... 169 4e-40
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 169 4e-40
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 168 1e-39
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 167 1e-39
gb|AAX96121.1| retrotransposon protein, putative, unclassified [... 167 1e-39
gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cult... 167 2e-39
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 165 9e-39
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 266 bits (679), Expect = 4e-69
Identities = 145/416 (34%), Positives = 230/416 (54%), Gaps = 7/416 (1%)
Query: 26 FSDFIVDNSLIDLSLCGRRFTWFKGDGNAMSRIDRFLLSEEWCLQWPNSFQVALLRGLSD 85
F +FI + LI++S FTWF+G S++DR + EW +P+ L R SD
Sbjct: 34 FQNFINNMGLIEISPIKGFFTWFRGQSK--SKLDRLFVQPEWLTSFPSLKLNILKRSPSD 91
Query: 86 HCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFVKDKLKSFQIEGWGGFVLREKLKFIKT 145
HCPL +NWGP+P R L CW P + + + + +KL+ +K
Sbjct: 92 HCPLLAFSSHQNWGPKPFRFLNCWLTHPQCMKIISEIWTKNHNSS-----VPDKLRTLKE 146
Query: 146 ALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSS 205
ALK+W+ I I +++ D+ + L +E+ E +L + + + S
Sbjct: 147 ALKQWNQKEFGIIDDNIKHCEEKIHFLDNIANSRLLCTNELQERDDAQLNLWTWLKRSES 206
Query: 206 ILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLVEGVQPIRNAVLSHFRD 265
SR W+K+GD+N++YFH++ + RR +N + + + + I+ +++F+
Sbjct: 207 YWALNSRARWIKEGDSNTRYFHTLATIRRHKNHLQYIKTEGKNISKPGEIKEEAVAYFQH 266
Query: 266 HFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFI 325
FA ++R + L F LS ++ S L PF+ +E+ AV CD+ K+PGPDG NF FI
Sbjct: 267 IFAEEFSTRPVFNGLNFNKLSESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFI 326
Query: 326 KEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKI 385
K W+ +K+D+ + + DF +G L G N+ FIALI K P+ N+FRPIS+VG LYKI
Sbjct: 327 KSSWEVIKKDIYKIVEDFWASGSLPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKI 386
Query: 386 LSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEARKNKRN*CCSKL 441
++K+LA RL+ V+ +I Q++F+K RQILDG+LIA+E++D R+ K KL
Sbjct: 387 IAKILARRLQRVMDHLIGPYQSSFIKGRQILDGVLIASELIDSCRRMKNEAVVLKL 442
>emb|CAD41368.2| OSJNBa0088A01.7 [Oryza sativa (japonica cultivar-group)]
gi|50928243|ref|XP_473649.1| OSJNBa0088A01.7 [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 184 bits (466), Expect = 2e-44
Identities = 134/436 (30%), Positives = 200/436 (45%), Gaps = 5/436 (1%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGN-AMSRID 59
DFN + A ++ +S + F I L ++ L R+FTW + M R+D
Sbjct: 597 DFNMIYRACDKSNSN--INLRRMRRFRAAINHCELKEIHLQNRKFTWTNERRHPTMVRLD 654
Query: 60 RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFV 119
RF +E W L + + L G SDHCPL LS + PR + W LPG+ V
Sbjct: 655 RFFCNENWDLAFGHHILHTLSSGTSDHCPLLLSNPQGPQRPRTFKFENFWTKLPGFRTEV 714
Query: 120 KDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVG 179
+ + L +KL ALK+W G S + K D +
Sbjct: 715 QLAWERTSTHHEPLHRLADKLSHTALALKKWARGICSEVKLKFHLALDVIQRLDVAQENR 774
Query: 180 DLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSI 239
DL+ E G+ L + + + Q SR+ +K+GDAN+KYFH ++ R+RRN I
Sbjct: 775 DLTQAEFRLRLGLKRRLLGYAAIERARKKQASRITNIKEGDANTKYFHRKVNARKRRNHI 834
Query: 240 ISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSA 299
L + + HFR R R N P L+ TD + L +PFS
Sbjct: 835 FRLRRQNGWAVTHAEKEGVIADHFRQ-VMGRPEPRTSDLNWPSLDLAPTDLTRLEEPFSE 893
Query: 300 DEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGI-NTTFI 358
E++ A+ + K+PGPDG F K WD ++ DV+ + H + + N+ +
Sbjct: 894 AEIRKAINEMPGDKAPGPDGFTGKFFKSCWDIIQVDVIAAFNALHNMRSVHLNLLNSANV 953
Query: 359 ALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDG 418
LI K D + INDFRPISL+ K+ SKVLA RL+ ++ +IS +Q+AF++ R I D
Sbjct: 954 VLIPKKDGAEGINDFRPISLIHGFAKLSSKVLAIRLRPLMQSLISPNQSAFIRGRSIHDN 1013
Query: 419 ILIANEVVDEARKNKR 434
+ +V K +R
Sbjct: 1014 FMYVRNMVRRYHKTRR 1029
>gb|AAX95233.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1018
Score = 183 bits (465), Expect = 2e-44
Identities = 130/436 (29%), Positives = 208/436 (46%), Gaps = 5/436 (1%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF-KGDGNAMSRID 59
DFN + A ++ S R ++ F + + +L L RRFTW +G ++ID
Sbjct: 133 DFNLIYRASDKNSDRLNRRMMQ--RFRGLLDKIQVKELQLPVRRFTWAGEGANPTQTKID 190
Query: 60 RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFV 119
R ++ +W L + +S L SDH PL L +E+ R W +PG+ + V
Sbjct: 191 RSFVTTDWDLMFESSNLYLLSSACSDHAPLFLVGNEQRSKFPSFRFESFWLKIPGFLEAV 250
Query: 120 KDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVG 179
+D + + + R KL+ + LK W +I ++ K D +
Sbjct: 251 QDSWQRPILATNCLAIFRIKLRCLARDLKRWSRSQVGDIKLQLAVASKVVFQLDIAQETR 310
Query: 180 DLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSI 239
LS DE L + + + + +LS +N + Q+SR WLK+GD NS +FH + RRR+N I
Sbjct: 311 TLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTWLKEGDVNSNFFHIKANSRRRKNYI 370
Query: 240 ISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSA 299
SL S + Q +L F++ +R GI N L D L + +
Sbjct: 371 QSLHTPSGIAISAQDKEEELLRFFKERIGSRFQRTSGI-NWNMMDLPSLDLGDLEEDITE 429
Query: 300 DEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFI-SDFHRNGKLTRGINTTFI 358
+E+K V+ K+PGPDG F K W+ + ED++ + S F N + +N+ FI
Sbjct: 430 EELKKTVFSMPPEKAPGPDGFIGAFFKSAWEIINEDLLSTVRSFFDLNTLQIKDLNSAFI 489
Query: 359 ALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDG 418
L+ K + +RPISL+ S KI+SK+LANRL L +++S +Q+AFV+ R I D
Sbjct: 490 CLLPKKEDALGAEHYRPISLIHSFSKIISKILANRLAPRLCELVSTNQSAFVRKRAIHDN 549
Query: 419 ILIANEVVDEARKNKR 434
+ +V + K+
Sbjct: 550 FVFVKNMVQYLHRTKK 565
>gb|AAX95130.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 930
Score = 183 bits (465), Expect = 2e-44
Identities = 130/436 (29%), Positives = 208/436 (46%), Gaps = 5/436 (1%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF-KGDGNAMSRID 59
DFN + A ++ S R ++ F + + +L L RRFTW +G ++ID
Sbjct: 45 DFNLIYRASDKNSDRLNRRMMQ--RFRGLLDKIQVKELQLPVRRFTWAGEGANPTQTKID 102
Query: 60 RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFV 119
R ++ +W L + +S L SDH PL L +E+ R W +PG+ + V
Sbjct: 103 RSFVTTDWDLMFESSNLYLLSSACSDHAPLFLVGNEQRSKFPSFRFESFWLKIPGFLEAV 162
Query: 120 KDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVG 179
+D + + + R KL+ + LK W +I ++ K D +
Sbjct: 163 QDSWQRPILATNCLAIFRIKLRCLARDLKRWSRSQVGDIKLQLAVASKVVFQLDIAQETR 222
Query: 180 DLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSI 239
LS DE L + + + + +LS +N + Q+SR WLK+GD NS +FH + RRR+N I
Sbjct: 223 TLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTWLKEGDVNSNFFHIKANSRRRKNYI 282
Query: 240 ISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSA 299
SL S + Q +L F++ +R GI N L D L + +
Sbjct: 283 QSLHTPSGIAISAQDKEEELLRFFKERIGSRFQRTSGI-NWNMMDLPSLDLGDLEEDITE 341
Query: 300 DEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFI-SDFHRNGKLTRGINTTFI 358
+E+K V+ K+PGPDG F K W+ + ED++ + S F N + +N+ FI
Sbjct: 342 EELKKTVFSMPPEKAPGPDGFIGAFFKSAWEIINEDLLSTVRSFFDLNTLQIKDLNSAFI 401
Query: 359 ALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDG 418
L+ K + +RPISL+ S KI+SK+LANRL L +++S +Q+AFV+ R I D
Sbjct: 402 CLLPKKEDALGAEHYRPISLIHSFSKIISKILANRLAPRLCELVSTNQSAFVRKRAIHDN 461
Query: 419 ILIANEVVDEARKNKR 434
+ +V + K+
Sbjct: 462 FVFVKNMVQYLHRTKK 477
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana] gi|7488318|pir||T01191
RNA-directed DNA polymerase homolog F21E10.5 -
Arabidopsis thaliana
Length = 928
Score = 179 bits (454), Expect = 4e-43
Identities = 138/463 (29%), Positives = 226/463 (48%), Gaps = 33/463 (7%)
Query: 1 DFNAVRYAEERKSSRG----ISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGNAM- 55
DFN + EE +SR +G+ D F + S+ DL+ G FTW N +
Sbjct: 30 DFNEILDMEEHSNSRENPVTTTGMRD---FQMAVNHCSITDLAYHGPLFTWSNKRENDLI 86
Query: 56 -SRIDRFLLSEEWCLQWPNSFQVALLRGLSDH--CPLQLSVDEENW--GPRPSRMLKCWQ 110
++DR L+++ W +P S+ V G SDH C + L+V G RP + +
Sbjct: 87 AKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDHLRCRINLNVGAGAVVKGKRPFKFVNVIT 146
Query: 111 DLPGYNQFVK---DKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGK----ID 163
++ + V+ ++ ++ + F +KLK +K L+ N+ + +
Sbjct: 147 EMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGLKPLLRNLGKERLGNLVKQTKEAFE 206
Query: 164 SLKKRQADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANS 223
+L ++QA + + S + E ++ + L Q+S+L WL GD N+
Sbjct: 207 TLCQKQAM-----KMANPSPSSMQEENEAYAKWDHIAVLEEKFLKQRSKLHWLDIGDRNN 261
Query: 224 KYFHSVLSGRRRRNSIISLLA-DSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGI----- 277
K FH + R +NSI ++ D ++ + I+ HFR+ GI
Sbjct: 262 KAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEHHFREFLQLIPNDFEGIAVEEL 321
Query: 278 -DNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDV 336
D LP++C S +D LT SA+E+ V+ + KSPGPDG F K W+ + +
Sbjct: 322 QDLLPYRC-SDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEF 380
Query: 337 MRFISDFHRNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKL 396
+ I F G L +GIN+T +ALI K + + D+RPIS LYK++SK++ANRLKL
Sbjct: 381 ILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKL 440
Query: 397 VLGKIISDSQTAFVKDRQILDGILIANEVVDEARKNKRN*CCS 439
VL K I +Q+AFVKDR +++ +L+A E+V + K+ + C+
Sbjct: 441 VLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCA 483
>gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 177 bits (450), Expect = 1e-42
Identities = 120/415 (28%), Positives = 209/415 (49%), Gaps = 20/415 (4%)
Query: 26 FSDFIVDNSLIDLSLCGRRFTWFKGDGN--AMSRIDRFLLSEEWCLQWPNSFQVALLRGL 83
F + ++ +++ DL G +TW+ N +IDR L+++ W + P S+
Sbjct: 167 FRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEF 226
Query: 84 SDHCPLQLSVDEENWGP-RPSRMLKCWQDLPGYNQFVKDKLKSFQIEGWGGFVLREKLKF 142
SDHCP +++ ++ G +P ++ P + + ++ +G F L +K KF
Sbjct: 227 SDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKF 286
Query: 143 IKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVGDLSADEILELRGITHDLH----S 198
+K ++ ++ H S + ++ QA + K +L A L G+ + H
Sbjct: 287 LKGTIRTFNREHYSGLEKRVV-----QAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAE 341
Query: 199 LSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNL-VEGVQPIRN 257
L+ L Q+SR+LWLK GD+N+ +FH +++ RR N I LL + +E ++
Sbjct: 342 LALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQT 401
Query: 258 AVLSHFRDHFAARH--TSRVGIDNLP----FKCLSHTDGSGLTKPFSADEVKSAVWDCDS 311
+ F++ F + S GI + FKC +T L S ++KS + S
Sbjct: 402 HCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQL-LEAEVSEADIKSEFFALPS 460
Query: 312 YKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRIN 371
KSPGPDG F K+ W + ++ + +F R+G+L N+T + ++ K + RI
Sbjct: 461 NKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRIT 520
Query: 372 DFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVV 426
+FRPIS ++YK++SK+LA RL+ +L IS SQ+AFVK R + + +L+A E+V
Sbjct: 521 EFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELV 575
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 174 bits (442), Expect = 1e-41
Identities = 123/442 (27%), Positives = 215/442 (47%), Gaps = 17/442 (3%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF-KGDGNAMSRID 59
DFN ++A E+ +S +D F+ FI D L ++ + G +FTW K +D
Sbjct: 760 DFNLYKFASEKSNSNIDVRCMDM--FNKFISDLDLREVHIIGPKFTWTNKQYCPTQEVLD 817
Query: 60 RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGP-RPSRMLKCWQDLPGYNQF 118
R L+S++W ++PNS ++LR SDH PL L E R R W + G+
Sbjct: 818 RILVSDDWDDRYPNSLISSVLRVGSDHTPLLLDTYELVVEKCRYFRFESAWLAVEGFKDL 877
Query: 119 VKDKLK----SFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDD 174
V K S+ +E W +K ++ L W I S SL+K+ + D
Sbjct: 878 VGKKFPDRDGSYILEFWN-----KKQVEMRRFLTGWGINKQSEDRRAKLSLQKKLEEIDS 932
Query: 175 KGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRR 234
K +L+ADE + L + + ++ WL +GD N++Y+H + +GR+
Sbjct: 933 KAVDAELNADEWRHRYELEDALEHIYELEELYWHKRCGEQWLLEGDRNTEYYHRIANGRK 992
Query: 235 RRNSIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDN---LPFKCLSHTDGS 291
+R +I SL+ + + +++ ++ +++ F + +S + + + CL D +
Sbjct: 993 KRCTITSLMDGDRELTTKEDLKHHIVEYYKSLFRSESSSSIHLSQGVWVDSLCLKEEDKN 1052
Query: 292 GLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTR 351
L +PF+ +E+ + + + GPDG + F + FW +L+ D+ + + +
Sbjct: 1053 TLMRPFTIEELYKVLREAKPNTAFGPDGFSIPFYRAFWPQLRPDLFEMLLMLYNEELDLK 1112
Query: 352 GINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVK 411
+N I+LI K +P I FRPI ++ +K +SK + NRL + +IS +QTAF+
Sbjct: 1113 RLNFGVISLIPKNSNPTDIKQFRPICVLNDCFKFISKCVCNRLTEIARDVISPTQTAFIP 1172
Query: 412 DRQILDGILIANEVVDEA-RKN 432
R IL+G +I +EV+ E RKN
Sbjct: 1173 GRFILEGCVIIHEVLHEMNRKN 1194
>gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1237
Score = 173 bits (439), Expect = 2e-41
Identities = 126/451 (27%), Positives = 219/451 (47%), Gaps = 33/451 (7%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLID------LSLCGRRFTWFKGDGN- 53
DFN +R +E+ + +Y F+ N++ID + + GR FTW N
Sbjct: 781 DFNILRSHDEKNND-------NYDDRWPFLF-NAIIDGLCLREIQMSGRNFTWANNLANP 832
Query: 54 AMSRIDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWG--PRPSRMLKCWQD 111
++DR L+S EW ++P S VAL R +SDH PL L+ + + + W
Sbjct: 833 TYEKLDRVLMSTEWEQKFPLSSVVALNRDISDHTPLPLNTNSSSLSNAQHSFKFELGWLL 892
Query: 112 LPGYNQFVKDKLKSFQ-----IEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLK 166
G+ + VK+ S +E W + K++ ++ L+ W H+S + K
Sbjct: 893 RDGFVEMVKEIWSSVDEGNTAMERW-----QAKIRRLRQHLRGWS-KHSSGLYKKEKKKI 946
Query: 167 KRQADFDDKGDVGDLSADEILELRGITHD-LHSLSRVNSSILWQQSRLLWLKDGDANSKY 225
+ D DK L + E L++R + L S+ R +Q+++ + +GD+N+KY
Sbjct: 947 LDKLDLLDKKAENSLLSPEELDIRWFCRNRLSSILREEEIKWYQRAKSKDILEGDSNTKY 1006
Query: 226 FHSVLSGRRRRNSIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDN---LPF 282
FH V +G+ R+ I L +L++G +++ + ++++ F S + D
Sbjct: 1007 FHLVANGKHRKTRIFQLQDSDHLIDGDANLKSHITTYYKGLFGPPDDSLLQFDESRVADI 1066
Query: 283 KCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISD 342
+S + LT+ F+ E+K A++ + K+ GPDG F + FW+ +K D++ +
Sbjct: 1067 PQISLLENEALTQDFTEKEIKKAIFQMEHNKASGPDGFPAEFYQVFWNVIKNDLLDLFKE 1126
Query: 343 FHRNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKII 402
FH +N I L+ K +I +RPI L+ +KI +KV NR+ V K+I
Sbjct: 1127 FHNGSLPLFSLNFGTIILLPKCVEAMKIQQYRPICLLNVSFKIFTKVATNRVMSVAQKVI 1186
Query: 403 SDSQTAFVKDRQILDGILIANEVVDEA-RKN 432
S +QTAF+ R I++G++I +E + E RKN
Sbjct: 1187 SPTQTAFIPGRNIMEGVVILHETLHELHRKN 1217
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 173 bits (438), Expect = 3e-41
Identities = 128/447 (28%), Positives = 216/447 (47%), Gaps = 27/447 (6%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF---KGDGNAMSR 57
DFN + E SR G F D + D L DL G T+ +G N R
Sbjct: 867 DFNETMWQFEH-FSRTPRGEPQMQDFRDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVR 925
Query: 58 IDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKC------WQD 111
+DR + ++W + + V L+ SDHCP+ L++ ++ P R KC W+
Sbjct: 926 LDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLVVKD--PHQLRQ-KCLHYEIVWER 982
Query: 112 LPGYNQFVKDKLKSFQIEGWGGFV--LREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQ 169
P Q +++ ++ + G + + + L + TAL+ W N+ +++ +K+
Sbjct: 983 EPEATQVIEE---AWVVAGEKADLGDINKALAKVMTALRSWSRAKVKNVGRELEKARKKL 1039
Query: 170 ADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSV 229
A+ + +AD + +R T ++ L + Q+SR+ WLKD D N+K+FHS
Sbjct: 1040 AELIES------NADRTV-IRNATDHMNELLYREEMLWLQRSRVNWLKDEDRNTKFFHSR 1092
Query: 230 LSGRRRRNSIISLL-ADSNLVEGVQPIRNAVLSHFRDHFAAR-HTSRVGIDNLPFKCLSH 287
R ++N I L A+ + + + +F+D + A + + + L + ++
Sbjct: 1093 AVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTADPNLNPETVTRLIQEKVTD 1152
Query: 288 TDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNG 347
L + F+ DE+ A++ KSPGPDG F + W +K D++ + F + G
Sbjct: 1153 IMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVRRFFQTG 1212
Query: 348 KLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQT 407
+ G+N T I LI K + P + DFRPISL +YK++SK L NRL+ +L ++S Q+
Sbjct: 1213 LMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQS 1272
Query: 408 AFVKDRQILDGILIANEVVDEARKNKR 434
AFV+ R I D L+A E +KNK+
Sbjct: 1273 AFVQGRMITDNALLAFECFHAMQKNKK 1299
>ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29893671|gb|AAP06925.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 870
Score = 172 bits (436), Expect = 5e-41
Identities = 129/437 (29%), Positives = 206/437 (46%), Gaps = 7/437 (1%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGNA-MSRID 59
DFN + A ++ +S + F I L ++ L R+FTW A + ++D
Sbjct: 145 DFNMIYRARDKNNSN--LNLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLD 202
Query: 60 RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFV 119
R +EEW L +P+ AL G SDHCPL LS + PR + W +PG+ V
Sbjct: 203 RCFCNEEWDLAFPHHVLHALPTGPSDHCPLVLSNPQGPHRPRTFKFENFWTRVPGFKDKV 262
Query: 120 KDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVG 179
KD L +KL+ L++W G S + D +
Sbjct: 263 KDIWSQPSSHTEPMHRLNQKLQRTAVGLRDWTKGICSEAKLQFHMALNVIQRLDVAQEHR 322
Query: 180 DLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSI 239
+LS E + + L+ + + Q SR+ +++GDAN+K+FH ++ RRRRN+I
Sbjct: 323 ELSPPETRLRAALKRKVLRLASIERARKKQASRVTHIREGDANTKFFHLKVNARRRRNTI 382
Query: 240 ISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSA 299
L DS + + HF F R R N ++ D + L +PF+
Sbjct: 383 QRLKKDSGWAVTHGEKESTIHDHFAS-FMGRPGPRPNELNWETLDITLIDLATLGEPFTE 441
Query: 300 DEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFH--RNGKLTRGINTTF 357
+EV A+ + + K+PGPDG F K W+ +K+D++ S + R L +N+
Sbjct: 442 EEVHRAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRCAHLNL-LNSAN 500
Query: 358 IALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILD 417
I LI K D + ++D+RPISL+ S+ KI +K+LA RL+ + ++IS +Q+AF+K R I D
Sbjct: 501 IVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQSAFIKGRSIHD 560
Query: 418 GILIANEVVDEARKNKR 434
L + + +R
Sbjct: 561 NYLFVRNMTRRYHRLRR 577
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 171 bits (434), Expect = 9e-41
Identities = 120/424 (28%), Positives = 208/424 (48%), Gaps = 33/424 (7%)
Query: 26 FSDFIVDNSLIDLSLCGRRFTWF--KGDGNAMSRIDRFLLSEEWCLQWPNSFQVALLRGL 83
F + L +++ G +F+W+ + D R+DR + ++ W +P + L +
Sbjct: 160 FRQMLNSCGLWEVNHSGYQFSWYGNRNDELVQCRLDRTVANQAWMELFPQAKATYLQKIC 219
Query: 84 SDHCPLQLSVDEENWGPRPS-RMLKCWQDLPGYNQFVKDKLKSF--QIEGWGGFVLREKL 140
SDH PL ++ +NW + K W G+ KD L +F Q ++ EK+
Sbjct: 220 SDHSPLINNLVGDNWRKWAGFKYDKRWVQREGF----KDLLCNFWSQQSTKTNALMMEKI 275
Query: 141 KFIKTALKEWHIGHASNIPGKIDSLK------KRQADFDDKGDVGDLSADEILELRGITH 194
+ + +W + +I L+ +Q FD + EL +
Sbjct: 276 ASCRREISKWKRVSKPSSAVRIQELQFKLDAATKQIPFDRR------------ELARLKK 323
Query: 195 DLHSLSRVNSSILWQQ-SRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLV-EGV 252
+L S N WQ+ SR++W+++GD N+KYFH+ RR +N I L+ +
Sbjct: 324 EL-SQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSD 382
Query: 253 QPIRNAVLSHFRDHFAARHTSRV--GIDNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCD 310
+ + ++F+ FA+ ++NL +S + L P + +EV+ A + +
Sbjct: 383 EDLGRVAEAYFKKLFASEDVGYTVEELENLT-PLVSDQMNNNLLAPITKEEVQRATFSIN 441
Query: 311 SYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRI 370
+K PGPDG+N ++FW+ + + + + F R+G + G+N T I LI KI +++
Sbjct: 442 PHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKM 501
Query: 371 NDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEAR 430
DFRPISL +YK++ K++ANRLK +L +IS++Q AFVK R I D ILIA+E++
Sbjct: 502 TDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALS 561
Query: 431 KNKR 434
N +
Sbjct: 562 SNNK 565
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 171 bits (434), Expect = 9e-41
Identities = 129/461 (27%), Positives = 225/461 (47%), Gaps = 21/461 (4%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTW--FKGDG-NAMSR 57
DFN + E KS R S F + + + L D+ G +T+ + +G N R
Sbjct: 117 DFNEAMWQTEHKSHRKRSES-QMRDFREVLSECDLHDIGFQGAPWTFCNMQREGRNVKVR 175
Query: 58 IDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQ 117
+DR + S W ++P + L SDH PL L +E RP ++++ ++++
Sbjct: 176 LDRGVASPAWSSRFPQAVITHLTTPSSDHAPLLLEREETTLA-RPMKIMR-YEEVWERES 233
Query: 118 FVKDKLKSFQIEGWGGFVL---REKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDD 174
+ + ++ G L +K+K T L W N+ KI L+++ + +
Sbjct: 234 SLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRN 293
Query: 175 KGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQ-SRLLWLKDGDANSKYFHSVLSGR 233
+G L D E+ + +L + I W+Q SR+ WLK+GD N++YFH S R
Sbjct: 294 ---IGLLDTDN--EVHSVKKELEEMLH-REEIWWKQRSRITWLKEGDLNTRYFHLKASWR 347
Query: 234 RRRNSIISLLA-DSNLVEGVQPIRNAVLSHFRDHFAAR-HTSRVGIDNLPFKCLSHTDGS 291
++N I L D + + ++ S F+ + + + V + N+ + +S +
Sbjct: 348 AKKNKIKKLKKNDGSTTMNKKEMKEINRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNA 407
Query: 292 GLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTR 351
L KPF+ +E+ A++ K+PGPDG F++ W LK +V+ + +F + +
Sbjct: 408 DLIKPFTNEEISDALFQIGPLKAPGPDGFPARFLQRNWGLLKGEVIAAVRNFFEDEVMQE 467
Query: 352 GINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVK 411
G+N T I +I K + + + DFRPISL +YK+++K L NR++ +L +IIS++Q+AF+
Sbjct: 468 GVNDTVIVMIPKKNLAEDMKDFRPISLCNVVYKVVAKCLVNRMRPMLQEIISEAQSAFIP 527
Query: 412 DRQILDGILIANEV---VDEARKNKRN*CCSKLILRRLLTR 449
R I D LIA E + ++ +N C KL L + R
Sbjct: 528 GRLITDNALIAFECFHSIKNCKRENQNFCALKLDLSKAYDR 568
>gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|34896522|ref|NP_909605.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1556
Score = 171 bits (432), Expect = 2e-40
Identities = 120/422 (28%), Positives = 205/422 (48%), Gaps = 19/422 (4%)
Query: 26 FSDFIVDNSLIDLSLCGRRFTWFKGDGN-AMSRIDRFLLSEEWCLQWPNSFQVALLRGLS 84
F+ I +L +L GR FTW N ++DR L+S E+ ++P S L R +S
Sbjct: 944 FNAVIDTLNLRELESSGRSFTWANHLQNQTFEKLDRILVSTEFETKFPLSTVSILTREIS 1003
Query: 85 DHCPLQLSVDEENWGPRPSRMLKC-WQDLPGYNQFVKDKLKSFQIEGWGGFVLREKLKFI 143
DH PL + + +P + W G++ VK+ + IEG + K++ +
Sbjct: 1004 DHTPLLYNSGGASAAYQPQFKFELGWLRRDGFSDIVKEVWQGVSIEGTPLERWQRKIRRL 1063
Query: 144 KTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVGDLSADEI------LELRGITHD-L 196
+ L+ W A NI G + KK + + DK D A+ L ++ + +D L
Sbjct: 1064 RQFLRGW----AKNITG---AYKKEKKELLDKLDTLVKKAEHTILNEFELNVKHVLNDRL 1116
Query: 197 HSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLVEGVQPIR 256
L R +Q++++ L +GDAN+KY+H + +GR R+ I L + ++ G ++
Sbjct: 1117 AELLREEEIKWYQRAKVKHLLEGDANTKYYHLLANGRHRKTRIFQLQDGNEVITGDAQLK 1176
Query: 257 NAVLSHFRDHFAARHTSRVGIDNLP---FKCLSHTDGSGLTKPFSADEVKSAVWDCDSYK 313
+ +F+ F TS + +D + +S + LT F+ +E+K A++
Sbjct: 1177 EHITKYFKTLFGPSQTSSIFLDESQVDDIRQVSAEENESLTADFTEEEIKCAIFQMKHNT 1236
Query: 314 SPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRINDF 373
+PGPDG F + FW +K+D++ SDF + +N I L+ K + I +
Sbjct: 1237 APGPDGFPPEFYQAFWTIIKDDLLALFSDFQQGSLPLNSLNFGTIILLPKQKDVRTIQQY 1296
Query: 374 RPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEARKNK 433
RPI L+ +KI +KV NRL V K+I +QTAF+ R I++G +I +E + E K
Sbjct: 1297 RPICLLNVSFKIFTKVATNRLTSVAQKVIKPTQTAFLPGRNIMEGAIILHETLHELHTKK 1356
Query: 434 RN 435
++
Sbjct: 1357 QD 1358
>gb|AAP53623.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534068|ref|NP_921336.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|19881727|gb|AAM01128.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1228
Score = 169 bits (429), Expect = 4e-40
Identities = 118/439 (26%), Positives = 210/439 (46%), Gaps = 16/439 (3%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF-KGDGNAMSRID 59
DFN R+A E+ ++ S +D F+ FI + L ++ G +FTW K D +D
Sbjct: 658 DFNLYRFASEKSNTNTNSRNMDM--FNSFIANLDLREIYRSGPKFTWTNKQDSLVQEVLD 715
Query: 60 RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENW-GPRPSRMLKCWQDLPGYNQF 118
R L++ +W +P + ++LR SDH PL L E + + W + +
Sbjct: 716 RILVTTDWDDMYPTALLSSILRVGSDHIPLLLDTCEGIIVKSKYFKFESAWLAEESFKEL 775
Query: 119 VKDKL----KSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDD 174
V +L S+ +E W +K ++ L W + S + +L+ + + D
Sbjct: 776 VIQRLLPRDNSYILEFWN-----KKQSSLRRFLVGWGKNNRSKKLREKRTLQCKIEELDK 830
Query: 175 KGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRR 234
K +L++DE + +DL + + ++ W+ +GD N+++FH V +GR+
Sbjct: 831 KALTEELTSDEWNQRYSWENDLEHIYEMEELYWHKRCGEQWILEGDRNTEFFHRVANGRK 890
Query: 235 RRNSIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKC---LSHTDGS 291
R+ I SL+ + IR ++ +++ F T+ + + + LS
Sbjct: 891 RKCHITSLMDGETELTSKSEIREHIVEYYKTLFRDVPTANIHLSQGVWTNHLNLSDASKE 950
Query: 292 GLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTR 351
LT+PF E+ + + +PGPDG + F + FW ++K D+ + H +
Sbjct: 951 NLTRPFVMAELDKVINEAKLNTAPGPDGFSIPFYRAFWPQVKNDLFEMLLMLHNEDLDLK 1010
Query: 352 GINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVK 411
+N I+LI K ++P I FRPI ++ +K LSKV+ NRL V +++S +QTAF+
Sbjct: 1011 RLNFGVISLIPKNNNPTDIKQFRPICVLNDCFKFLSKVVTNRLTEVADEVVSQTQTAFIP 1070
Query: 412 DRQILDGILIANEVVDEAR 430
R IL+G +I +EV+ E +
Sbjct: 1071 GRFILEGCVIIHEVLHELK 1089
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078. [Arabidopsis
thaliana] gi|25518658|pir||F86436 hypothetical protein
F28K20.4 - Arabidopsis thaliana
Length = 1253
Score = 169 bits (429), Expect = 4e-40
Identities = 121/442 (27%), Positives = 207/442 (46%), Gaps = 21/442 (4%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGN--AMSRI 58
DFN V E + ++ F D + + L DL G FTW+ ++
Sbjct: 93 DFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKL 152
Query: 59 DRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDE-ENWGPRPSRMLKCWQDLPGYNQ 117
DR L++E WC ++P+++ V SDH + ++ + RP R P +
Sbjct: 153 DRILVNESWCSRFPSAYAVFGEPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFIS 212
Query: 118 FVKDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGD 177
V + S + G F + +KLK +K ++ + + + SN+ ++ +K
Sbjct: 213 LVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTL 272
Query: 178 VGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRN 237
+ LE+ L L + S Q+SR+ W+ +GD+N+ YFH + R+ N
Sbjct: 273 SDPTIPNAALEMEAQRKWL-ILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVN 331
Query: 238 SIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNL---------PFKCLSHT 288
+I ++ D+ + Q + H ++F+ VG L PF+C SH
Sbjct: 332 TIHIIIDDNGVKIDTQL---GIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRC-SHD 387
Query: 289 DGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGK 348
L FS ++KSA + S K+ GPDG F KE W + +V +S+F +
Sbjct: 388 QKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSV 447
Query: 349 LTRGINTTFIALISKIDSPQRINDFRPISLVG----SLYKILSKVLANRLKLVLGKIISD 404
L + N T + LI KI + ++NDFRPIS +LYK+++++L NRL+ +L ++IS
Sbjct: 448 LLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISP 507
Query: 405 SQTAFVKDRQILDGILIANEVV 426
Q+AF+ R + + +L+A E+V
Sbjct: 508 FQSAFLPGRFLAENVLLATELV 529
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 168 bits (425), Expect = 1e-39
Identities = 127/437 (29%), Positives = 204/437 (46%), Gaps = 7/437 (1%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGNA-MSRID 59
DFN + A ++ +S + F I L ++ L R+FTW A + ++D
Sbjct: 145 DFNMIYRARDKNNSN--LNLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLD 202
Query: 60 RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFV 119
R +EEW L +P+ AL G SDH PL LS + PR + W +PG+ V
Sbjct: 203 RCFCNEEWDLAFPHHVLHALPTGPSDHYPLVLSNPQGPHRPRTFKFENFWTRVPGFKDKV 262
Query: 120 KDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVG 179
KD L +KL+ L++W G S + D +
Sbjct: 263 KDIWSQPSSHTEPMHRLNQKLQHTAVGLRDWTKGICSEAKLQFHMALNVIQRLDVAQEHR 322
Query: 180 DLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSI 239
+L+ E + + L+ + + Q SR+ +++GDAN+K+FH ++ RRRRN+I
Sbjct: 323 ELTPLETRLRAALKRKVLGLASIERARKKQASRVTHIREGDANTKFFHLKVNARRRRNTI 382
Query: 240 ISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSA 299
L DS + HF F R R N ++ D + L +PF+
Sbjct: 383 QRLKKDSGWAVTHGDKELTIHDHFAS-FMGRPGPRPNELNWETLDITPIDLATLGEPFTE 441
Query: 300 DEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFH--RNGKLTRGINTTF 357
+EV A+ + + K+PGPDG F K W+ +K+D++ S + R L +N+
Sbjct: 442 EEVHKAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRCAHLNL-LNSAN 500
Query: 358 IALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILD 417
I LI K D + ++D+RPISL+ S+ KI +K+LA RL+ + ++IS +Q+AF+K R I D
Sbjct: 501 IVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQSAFIKGRSIHD 560
Query: 418 GILIANEVVDEARKNKR 434
L + + +R
Sbjct: 561 NYLFVRNTIRRYHRQRR 577
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 167 bits (424), Expect = 1e-39
Identities = 118/415 (28%), Positives = 201/415 (48%), Gaps = 18/415 (4%)
Query: 34 SLIDLSLCGRRFTWF--KGDGNAMSRIDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQL 91
SL D++ G FTW + G M ++DR L+++ W + S+ V G SDH ++
Sbjct: 176 SLTDMAAQGPLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGGCSDHLRCRI 235
Query: 92 SVDEENW----GPRPSRMLKCWQDLPGYNQFVKDKLKSFQ---IEGWGGFVLREKLKFIK 144
S++ E G +P + + D+ + V K + + F + LK +K
Sbjct: 236 SLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLK 295
Query: 145 TALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVGDLSADEILELRGITHDLHSLSRVNS 204
++ N+ K + K ++ + S+ + E ++ +
Sbjct: 296 PKIRSMARDRLGNLSKKANEAYKILCA-KQHVNLTNPSSMAMEEENAAYSRWDRVAILEE 354
Query: 205 SILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLVEGV-QPIRNAVLSHF 263
L Q+S+L W + GD N+K FH + R N+I +L++ +V+ I+ F
Sbjct: 355 KYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFF 414
Query: 264 RDHFAARHTSRVGI------DNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGP 317
R+ G+ LP +C S D L +P +A+E++ ++ S KSPGP
Sbjct: 415 REFLQLIPNDFEGVTITELQQLLPVRC-SDADQQSLIRPVTAEEIRKVLFRMPSDKSPGP 473
Query: 318 DGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRINDFRPIS 377
DG F K W+ + ++ + F G L +GIN+T +ALI K + + D+RPIS
Sbjct: 474 DGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPIS 533
Query: 378 LVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEARKN 432
LYK++SK++ANRLKLVL K I+ +Q+AFVKDR +++ +L+A E+V + K+
Sbjct: 534 CCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKD 588
>gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1556
Score = 167 bits (424), Expect = 1e-39
Identities = 129/460 (28%), Positives = 218/460 (47%), Gaps = 35/460 (7%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDN-SLIDLSLCGRRFTWFKGDGN-AMSRI 58
DFN +R E+ + R + + ++D+ +L ++ L G +FTW N ++
Sbjct: 866 DFNIIRNPMEKNNERYNDR---WPFLFNVVIDSLNLREILLSGCKFTWANSMPNPTYEKL 922
Query: 59 DRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQF 118
DR L+S EW + P AL R LSDH PL L D R ++ L ++
Sbjct: 923 DRVLVSTEWETKNPLVTVHALCRDLSDHTPLVL--DTGKGTHRNAQPLFKFE----LGWL 976
Query: 119 VKDKLKSFQIEGWGGFVL--------REKLKFIKTALKEWHIGHASNIPGKIDSLKKRQA 170
++D ++ +E W + + K++ ++ L+ W N+ G K R
Sbjct: 977 LRDDFQNLLVEIWSKDIQGATNIERWQNKIRRLRQFLRGW----VKNLSGAYKKEKPRLI 1032
Query: 171 ----DFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYF 226
+ D + L++ E+ + L L R + W Q GD N+KY+
Sbjct: 1033 AKVDELDKLAETRILTSQELDLKNSCKNALAQLLR-EEEVKWYQRAKTKRIVGDRNTKYY 1091
Query: 227 HSVLSGRRRRNSIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGI-----DNLP 281
H + +G+ R+ I L + +++G ++ V +++R F A + + D++P
Sbjct: 1092 HMITNGKHRKTKIFQLEQEEGVIKGDAQLKKYVTNYYRGLFGAPDGNCFSMCESQKDDIP 1151
Query: 282 FKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFIS 341
+S + + LTK F+ +EVK AV+ + K+PGPDG F + FW+ +KED+M
Sbjct: 1152 Q--VSMEENTFLTKEFTEEEVKHAVFQMEHNKAPGPDGFPAEFYQVFWEVIKEDLMAVFR 1209
Query: 342 DFHRNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKI 401
DFH +N I L+ K ++I +R I L+ +K+ +KV+ANR+ LV K+
Sbjct: 1210 DFHSGELPLHRLNFGIITLLPKNKEAKQIQQYRRICLLNVSFKVFTKVMANRIALVAQKV 1269
Query: 402 ISDSQTAFVKDRQILDGILIANEVVDEARKNKRN*CCSKL 441
I SQ AF+K R I++G +I +E + E K K N KL
Sbjct: 1270 IRPSQIAFLKGRNIIEGAIILHETLHEMHKKKSNGVILKL 1309
>gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 167 bits (423), Expect = 2e-39
Identities = 121/403 (30%), Positives = 193/403 (47%), Gaps = 5/403 (1%)
Query: 35 LIDLSLCGRRFTWFKGDGNA-MSRIDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSV 93
L ++ L R+FTW A + ++DR +EEW L +P+ A G SDHCPL LS
Sbjct: 11 LHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHAFPTGPSDHCPLVLSN 70
Query: 94 DEENWGPRPSRMLKCWQDLPGYNQFVKDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIG 153
+ PR + W +PG+ VKD L +KL+ L++W G
Sbjct: 71 PQGPHRPRTFKFENFWTRVPGFKDKVKDIWSQPSSHTEPMHHLNQKLQRTAVGLRDWTKG 130
Query: 154 HASNIPGKIDSLKKRQADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRL 213
S + D + +LS E + + L+ + + Q SR+
Sbjct: 131 ICSEAKLQFHMALNVIQRLDVAQEHRELSPPETRLRAALKRKVLGLASIERARKKQASRV 190
Query: 214 LWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTS 273
+++GDAN+K+FH ++ RRRRN+I L DS + HF F R
Sbjct: 191 THIREGDANTKFFHLRVNARRRRNTIQRLKKDSGWAVTHGEKELTIHDHFAS-FMGRPGP 249
Query: 274 RVGIDNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELK 333
R N ++ D + L +PF+ +EV A+ + + K+PGPDG F K W+ +K
Sbjct: 250 RPNELNWETLDITPIDLATLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFKVCWEIIK 309
Query: 334 EDVMRFISDFH--RNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLA 391
+D++ S + R L +N+ I LI K D + ++D+RPISL+ S+ KI +K+LA
Sbjct: 310 DDILLVFSSIYNLRCAHLNL-LNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLA 368
Query: 392 NRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEARKNKR 434
RL+ + ++IS +Q+AF+K R I D L ++ + +R
Sbjct: 369 LRLRPHMHELISVNQSAFIKGRSIHDNYLFVRNMIRRYHRLRR 411
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 165 bits (417), Expect = 9e-39
Identities = 134/447 (29%), Positives = 210/447 (46%), Gaps = 26/447 (5%)
Query: 1 DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF-KGDGNAMS--R 57
DFN V +E R S HF + D LIDL G +FTW K D N+ S R
Sbjct: 142 DFNEVLCLDEHLGMRERSEP-HMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVR 200
Query: 58 IDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPS------RMLKCWQD 111
+DR + + E+ + + ++ SDH + + + N G R R W
Sbjct: 201 LDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLR 260
Query: 112 LPGYNQFVKDKLKSFQIEGWGGFVLR---EKLKFIKTALKEWHIGHASNIPGKIDSLKKR 168
Y + V++ S++I G LR L+ + +LK+W ++ KI ++++
Sbjct: 261 AEDYREVVEN---SWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKILKMERK 317
Query: 169 QADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHS 228
+ V D+ I E + I L L + Q+SR+ WL++GD N+ +FH+
Sbjct: 318 LKSLR-QSPVNDVV---IQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHA 373
Query: 229 VLSGRRRRNSIISLLADSNL----VEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKC 284
S RRR N I L+ D EG++ + + V +D +P K
Sbjct: 374 RASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEPCDSMEEV-LDAIPNKV 432
Query: 285 LSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFH 344
+G L K ++ +E+K+A++ S K+PGPDG F + W L+E + + F
Sbjct: 433 GDFINGE-LGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFL 491
Query: 345 RNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISD 404
++ G+ + + LI K+++ ++ FRPISL LYKI SKVLANRLK L I+S+
Sbjct: 492 LGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSE 551
Query: 405 SQTAFVKDRQILDGILIANEVVDEARK 431
Q+AFV R I D L+A E + RK
Sbjct: 552 FQSAFVPGRLITDSALVAYECLHTIRK 578
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.344 0.155 0.538
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,765,844,428
Number of Sequences: 2540612
Number of extensions: 73964996
Number of successful extensions: 263515
Number of sequences better than 10.0: 679
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 262083
Number of HSP's gapped (non-prelim): 950
length of query: 1087
length of database: 863,360,394
effective HSP length: 139
effective length of query: 948
effective length of database: 510,215,326
effective search space: 483684129048
effective search space used: 483684129048
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 81 (35.8 bits)
Medicago: description of AC135464.5