BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135464.1 - phase: 0 /pseudo
(317 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana] ... 207 2e-52
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 204 4e-51
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 201 2e-50
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 196 1e-48
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 195 2e-48
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 191 3e-47
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 180 6e-44
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 179 7e-44
ref|NP_916849.1| retrovirus-related pol polyprotein from transpo... 173 5e-42
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 173 7e-42
ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sa... 172 1e-41
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu... 171 3e-41
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 170 6e-41
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 167 4e-40
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 164 4e-39
ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cu... 162 1e-38
emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultiva... 162 1e-38
dbj|BAA97536.1| retroelement pol polyprotein-like [Arabidopsis t... 161 3e-38
gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cult... 160 3e-38
gb|AAP53029.1| putative retrotransposon-related protein [Oryza s... 160 6e-38
>emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana]
gi|4539406|emb|CAB40039.1| putative retrotransposon
[Arabidopsis thaliana] gi|7444416|pir||T04181
hypothetical protein F7L13.40 - Arabidopsis thaliana
Length = 1230
Score = 207 bits (528), Expect = 2e-52
Identities = 135/343 (39%), Positives = 188/343 (54%), Gaps = 37/343 (10%)
Query: 7 DIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEK-------------R 53
++EKF G D+ L K K+ A + AL+ + L EE+
Sbjct: 7 EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66
Query: 54 EMVDKAKSAIVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMM 113
E KA+S IVL + D+VLR +E TA SML + LYM+K+L +R LKQ+LYS+KM
Sbjct: 67 EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126
Query: 114 ESKSISEQLTEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGK-EGTAT 172
E+ S+ + EF +++ DL N V + DED+A+LLL SLPK F+ KDT+ YG T +
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLS 186
Query: 173 LEEVQAALRTKELTKFKDMKVDEG-SEGLNV-----TRGRNEHRGKGKGKSRSKSRSKGF 226
++EV AA+ +KEL + K G +EGL V TRG +E + KG K RS+SRSKG+
Sbjct: 187 VDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKG-NKGRSRSRSKGW 245
Query: 227 DKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEE------------GYESAGAL 274
C++C ++GHFK CP+KG + A S E GY + AL
Sbjct: 246 K----GCWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYVSEAL 301
Query: 275 VVTSWEPEKSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
T WV+D+GC+YHM +KE+FE L GG VR+GN
Sbjct: 302 HSTDVNLGNEWVMDTGCNYHMTHKKEWFEELSEDAGGTVRMGN 344
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 204 bits (518), Expect = 4e-51
Identities = 133/342 (38%), Positives = 197/342 (56%), Gaps = 38/342 (11%)
Query: 7 DIEKFTGSNDFGL*KVKMQA---ILTQQKCVEALKGEAEMPATLTQ-----EEKREMVD- 57
++EKF G D+ + K K+ A IL ++ + E + L + EEK E +
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66
Query: 58 ------KAKSAIVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFK 111
KA+SAIVL + D+VLR + +E+TAA+ML + LYM+K+L +R KQ+LYSFK
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126
Query: 112 MMESKSISEQLTEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGK-EGT 170
M E+ S+ + EF +I+ DL N+ V + DED+A+LLL +LPK+F+ KDT+ Y +
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSI 186
Query: 171 ATLEEVQAALRTKEL---TKFKDMKVDEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKGFD 227
TL+EV AA+ +KEL + K +KV +EGL V + +NE++GKG+ K + K + KG
Sbjct: 187 LTLDEVAAAIYSKELELGSVKKSIKVQ--AEGLYV-KDKNENKGKGEQKGKGKGK-KGKS 242
Query: 228 KSKYKCFLCHKQGHFKKDCPD------------KGGDGSPSVQVAEASNEEGYESAGALV 275
K K C+ C ++GHF+ CP+ KG +AEA+ GY + AL
Sbjct: 243 KKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAA---GYYVSEALS 299
Query: 276 VTSWEPEKSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
T E W+LD+GCSYHM ++E+F GG VR+GN
Sbjct: 300 STEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGN 341
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25412027|pir||G84599 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 838
Score = 201 bits (512), Expect = 2e-50
Identities = 126/335 (37%), Positives = 197/335 (58%), Gaps = 28/335 (8%)
Query: 7 DIEKFTGSNDFGL*KVKMQAI---------LTQQKCVEALKGEAEMPATLTQEEKREMVD 57
++EK G D+ L K K+ A L + + +E + AE + LT+ E + + +
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 58 K---AKSAIVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMME 114
K A+S ++L LG+ VLR V +E TAA M+ + L+M KSL +R LKQ+LY +KM +
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 115 SKSISEQLTEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLE 174
S +I E + +F K++ DL N++V++ DED+A++LL SLPK F+ KDT+ YGK T L+
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALD 185
Query: 175 EVQAALRTKELTKFKDMK-VDEGSEGLNV-TRGRNEHRGKGKGKSRSKSRSKGFDKSKYK 232
E+ A+R+K L K + S+ L V RGR+E R K +++S+SRSK + K
Sbjct: 186 EITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERNKSQSRSK--SREKKV 243
Query: 233 CFLCHKQGHFKKDC---PDKGGDGSPSVQVAEASNEEGYES-AGALVV------TSWEPE 282
C++C K+GHFKK C +K G+ S + E+SN G + A AL V + E +
Sbjct: 244 CWVCGKEGHFKKQCYVWKEKNKKGNNS-EKGESSNVIGQAADAAALAVREESNADNQEVD 302
Query: 283 KSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
W++D+GCS+HM PR+++F + G V++ N
Sbjct: 303 NEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMAN 337
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 196 bits (497), Expect = 1e-48
Identities = 129/342 (37%), Positives = 194/342 (56%), Gaps = 35/342 (10%)
Query: 7 DIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEM----------------PATLTQ- 49
++EKF G D+ L K K+ A + +E L E E P T T
Sbjct: 7 EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66
Query: 50 -EEK--REMVDKAKSAIVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQ 106
E+K +E KA+S I+L LG+ VLR V ++ TAA M+ + L+M KSL +R LKQ+
Sbjct: 67 LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126
Query: 107 LYSFKMMESKSISEQLTEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYG 166
LY +KM E+ ++ E + +F K++ DL N++V + DED+A++LL SLP+ F+ K+T+ Y
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186
Query: 167 KEGTATLEEVQAALRTKELTKFKDMK-VDEGSEGLNV-TRGRNEHRGKGKGKSRSKSRSK 224
K T LEE+ +A+R+K L K + S+GL V RGR+E RGKG K++S+S+SK
Sbjct: 187 KT-TLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKNKSRSKSK 245
Query: 225 GFDKSKYKCFLCHKQGHFKKDC---PDKGGDGSPSVQVAEASNEEGYESAGALVVT---- 277
G K+ C++C K+GHFKK C ++ GS S + ++ A ALVV+
Sbjct: 246 GAGKT---CWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVSRALL 302
Query: 278 --SWEPEKSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
+ +W+LD+GCS+HM RK++ G VR+GN
Sbjct: 303 GFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGN 344
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 195 bits (495), Expect = 2e-48
Identities = 136/355 (38%), Positives = 198/355 (55%), Gaps = 49/355 (13%)
Query: 3 GSKWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMP---------ATLTQEEKR 53
G++ ++EKF G D+ + K K+ A + L+ E+E P + ++E+R
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLR-ESETPMGKERDSEKSDEDEKEER 61
Query: 54 EMVD-------KAKSAIVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQ 106
E ++ KA+S IVL + D+VLR + +E +AA+ML + LYM+K+L +R LKQ+
Sbjct: 62 EKMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQK 121
Query: 107 LYSFKMMESKSISEQLTEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYG 166
LYSFKM E+ SI + EF I+ DL N+ V + DED+A+LLL SLPK F+ KDT+ Y
Sbjct: 122 LYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYS 181
Query: 167 KEGTA-TLEEVQAALRTKELTKFKDMK--VDEGSEGLNV-----TRGRNEHRGKGKGKSR 218
T +L+EV AA+ ++EL +F +K + +EGL V RGR+E + KGKGK R
Sbjct: 182 SGKTVLSLDEVAAAIYSREL-EFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGK-R 239
Query: 219 SKSRSKGFDKSKYKCFLCHKQGHFKKDCPDKG-------GDGSPSVQVAEASNEEG---- 267
SKS KSK C++C + GH K CP+K G + + EG
Sbjct: 240 SKS------KSKRGCWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVNF 293
Query: 268 YESAG-----ALVVTSWEPEKSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
ESAG AL T E W++D+GC YHM ++E+ E + GG VR+GN
Sbjct: 294 VESAGMFVSEALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGN 348
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301702|pir||E84601 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 191 bits (484), Expect = 3e-47
Identities = 131/333 (39%), Positives = 184/333 (54%), Gaps = 42/333 (12%)
Query: 7 DIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEM-----PATLTQEEKREMV----- 56
++EKF G D+ + K K+ A L ALK E ++ LT+EE++E V
Sbjct: 7 EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66
Query: 57 -----DKAKSAIVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFK 111
KA+SAIVL + D+VLR + +E +AA+ML + LYM+K+L +R KQ+LYSFK
Sbjct: 67 LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126
Query: 112 MMESKSISEQLTEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYG-KEGT 170
M E+ SI + EF +I+ DL N V + DED+A+LLL SLPK F+ +DT+ YG T
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVT 186
Query: 171 ATLEEVQAALRTKELTKFKDMKVDEG-SEGLNV-----TRGRNEHRGKGKGKSRSKSRSK 224
+L+EV AA+ +KEL + K +G +EGL V TRGR E RG +S+S+S
Sbjct: 187 LSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKS- 245
Query: 225 GFDKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEEGYESAGALVVTSWEPEKS 284
+SK C++C G S + S G + AL T E
Sbjct: 246 ---RSKKGCWIC----------------GESSNGSSNYSEANGLYVSEALSSTDIHLEDE 286
Query: 285 WVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
WV+D+GCSYHM ++E+FE L GG VR+GN
Sbjct: 287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGN 319
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 180 bits (456), Expect = 6e-44
Identities = 110/327 (33%), Positives = 184/327 (55%), Gaps = 15/327 (4%)
Query: 3 GSKWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSA 62
G K+++ KF G N F + +M+ +L QQ + L +++ P T+ E+ ++ ++A SA
Sbjct: 3 GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62
Query: 63 IVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQL 122
I L L D V+ ++ E TA + + ESLYM+K+L ++ LK+QLY+ M E + L
Sbjct: 63 IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122
Query: 123 TEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRT 182
FN ++ LAN+ V +E+EDKA+LLL SLP S+++ TIL+GK T L++V +AL
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKT-TIELKDVTSALLL 181
Query: 183 KELTKFKDMKVDEGSEGLNVTRGRNEHRGKGK-GKSRSKSRSKGFDKSKYK-CFLCHKQG 240
E K + ++G + RGR+ R G+S ++ +SK KS+ + C+ C++ G
Sbjct: 182 NE--KMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPG 239
Query: 241 HFKKDCPD-KGGDGSPSVQVAEASNEEGYESAGALVVTSWE---------PEKSWVLDSG 290
HFK+DCP+ + G G S Q + + ++ +V+ E PE WV+D+
Sbjct: 240 HFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTA 299
Query: 291 CSYHMCPRKEYFETLILKEGGVVRLGN 317
S+H P ++ F + + G V++GN
Sbjct: 300 ASHHATPVRDLFCRYVAGDFGTVKMGN 326
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 179 bits (455), Expect = 7e-44
Identities = 119/336 (35%), Positives = 179/336 (52%), Gaps = 31/336 (9%)
Query: 5 KWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSAIV 64
K+D+ F L +VKM+A+L QQ+ +AL G + + +EK+ KA S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEKKRD-RKAMSYIH 63
Query: 65 LCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLTE 124
L L + +L++V +E TAA + K E + MTK L + LKQ+L+ K+ + S+ + L+
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123
Query: 125 FNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTKE 184
F +I+ DL ++EV +++D AL+LLCSLP S+ +F+DTILY ++ T TL+EV AL KE
Sbjct: 124 FKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRD-TLTLKEVYDALHAKE 182
Query: 185 LTKFKDMKVDEGS----EGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKS--KYK-CFLCH 237
K K M EGS EGL V + E K + +S S +G KS +YK C C
Sbjct: 183 --KMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCK 240
Query: 238 KQGHFKKDC----------------PDKGGDGSPSVQVAEASNEEGYESAGALVVTSWEP 281
+ GH C K +G +V E S+ E + TS
Sbjct: 241 RDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS--- 297
Query: 282 EKSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
W+LD+ C+YHMCP +++F T + +GG V +G+
Sbjct: 298 -DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGD 332
>ref|NP_916849.1| retrovirus-related pol polyprotein from transposon TNT 1-94-like
[Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 173 bits (439), Expect = 5e-42
Identities = 108/317 (34%), Positives = 181/317 (57%), Gaps = 18/317 (5%)
Query: 4 SKWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSAI 63
SK+++ KF G+ +F L +++++ +L QQ +AL E MP + + EM +A + I
Sbjct: 7 SKFEMVKFDGTGNFVLWQMRLKDLLAQQGISKAL--EETMPEKMDAGKWEEMKAQAAATI 64
Query: 64 VLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLT 123
L L D V+ V E T + K SLYM+KSL + LKQQLY +M E + + +
Sbjct: 65 RLSLSDSVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVD 124
Query: 124 EFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTK 183
FN+++ DL+ ++VN+ DEDKA++LLCSLP S+EH T+ +GK+ T EE+ ++L +
Sbjct: 125 VFNQLVVDLSKLDVNLYDEDKAIILLCSLPPSYEHVVTTLTHGKD-TIKTEEIISSLLAR 183
Query: 184 ELTKFKDMKVDEGSEGLN-VTRGRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGHF 242
+L + K + E S+ + + + +++H SKS KG +C+ CH+ GH
Sbjct: 184 DLRRSKKNEAMEASQAESLLVKAKHDHEA-----GVSKSNEKG-----ARCYKCHEFGHI 233
Query: 243 KKDCP--DKGGDGSPSVQVAEASNEEGYESAGALVVTSWEPEKSWVLDSGCSYHMCPRKE 300
+++CP K DG S +A ++ S L V++ + ++W+LDS SYH+ ++E
Sbjct: 234 RRNCPLLKKRKDGIAS--LAARGDDSDSSSHEILTVSNEKSGEAWMLDSASSYHVTSKRE 291
Query: 301 YFETLILKEGGVVRLGN 317
+F + + GVV LG+
Sbjct: 292 WFFSYKSGDFGVVYLGD 308
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 173 bits (438), Expect = 7e-42
Identities = 121/340 (35%), Positives = 177/340 (51%), Gaps = 39/340 (11%)
Query: 5 KWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSAIV 64
K+D+ F L +VKM+A+L QQ +AL G + + +EK++ KA S I
Sbjct: 40 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKKD-RKAMSYIH 98
Query: 65 LCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLTE 124
L L + +L++V +E TAA + K E + MTK L + LKQ+L+ K+ + S+ + L+
Sbjct: 99 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLST 158
Query: 125 FNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTKE 184
F +I+ DL +IEV ++ED L+LLCSLP S+ +F+DTILY + T L+EV AL KE
Sbjct: 159 FKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHD-TLILKEVYDALHAKE 217
Query: 185 LTKFKDMKVDEGS----EGLNVTRGR-------NEHRGKGKGKSRSKSRSKGFDKSKYKC 233
K K M EGS EGL V RGR N+ R K R +S+S+G KS C
Sbjct: 218 --KMKKMVPSEGSNSQAEGL-VVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKS---C 271
Query: 234 FLCHKQGHFKKDC----------------PDKGGDGSPSVQVAEASNEEGYESAGALVVT 277
C + GH +C K +G +V E S+ E + T
Sbjct: 272 KYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQT 331
Query: 278 SWEPEKSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
S W+LD+ +YHMCP +++F T +GG V +G+
Sbjct: 332 S----DQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGD 367
>ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sativa]
gi|14029020|gb|AAK52561.1| Putative retroelement pol
polyprotein [Oryza sativa]
Length = 1326
Score = 172 bits (436), Expect = 1e-41
Identities = 119/329 (36%), Positives = 181/329 (54%), Gaps = 24/329 (7%)
Query: 5 KWDIEKFTGSNDFGL*KVKMQAILTQQKCV-EALKGEAEMPATLTQEEKREMVDKAKSAI 63
K+D+ F L +VKM+AIL Q + EAL+ + +T E++ KA I
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLI 64
Query: 64 VLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLT 123
L L + +L++V +E TAA + K ES+ M+K L + +K +L+S K+ ES S+ ++
Sbjct: 65 QLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 124
Query: 124 EFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTK 183
F +I+ DL +IEV +DED LLLLCSLP S+ +F+DTIL ++ TL EV AL+ +
Sbjct: 125 VFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRD-ELTLAEVYEALQNR 183
Query: 184 ELTKFKDMKVDEGS----EGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKYK--CFLCH 237
E K K M + S E L V RGR+E R R KS+S+G KS+ K C C
Sbjct: 184 E--KMKGMVQSDASSSKGEALQV-RGRSEQRTYNDSSDRDKSQSRGRSKSRGKKFCKYCK 240
Query: 238 KQGHFKKDC------PDKGGDGSPSVQVAEASNEEGYESAGALVVTSW--EPEKSWVLDS 289
K+ HF ++C + DG SV ++ E +S LVV + W+LD+
Sbjct: 241 KKNHFIEECWKLQNKEKRKSDGKASV----VTSAENSDSGDCLVVFAGCVASHDEWILDT 296
Query: 290 GCSYHMCPRKEYFETL-ILKEGGVVRLGN 317
CS+H+C +++F + ++ G VVR+G+
Sbjct: 297 ACSFHICINRDWFSSYKSVQNGDVVRMGD 325
>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1211
Score = 171 bits (432), Expect = 3e-41
Identities = 118/337 (35%), Positives = 175/337 (51%), Gaps = 33/337 (9%)
Query: 5 KWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSAIV 64
K+D+ F L +VKM+A+L QQ +AL G + + +EK+ K S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKRD-RKTMSYIH 63
Query: 65 LCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLTE 124
L L + +L++V +E TAA + K E + MTK L + LKQ+L+ K+ + S+ + L+
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123
Query: 125 FNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTKE 184
F KI+ DL ++EV ++ED L+LLCSLP S+ +F+DTILY + T TL+EV AL KE
Sbjct: 124 FKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRDTILYSCD-TLTLKEVYDALHAKE 182
Query: 185 LTKFKDMKVDEGS----EGLNVTRGRNEHR---GKGKGKSRSKSRSKGFDKSKYK-CFLC 236
K K M EGS EGL V RGR + + K + KS S R + + +YK C
Sbjct: 183 --KIKKMVPSEGSNSQAEGL-VVRGRQQEKNTNSKSRDKSSSSYRGRSKSRGRYKSCKYY 239
Query: 237 HKQGHFKKDC----------------PDKGGDGSPSVQVAEASNEEGYESAGALVVTSWE 280
+ GH +C K +G +V E S+ E + TS
Sbjct: 240 KRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS-- 297
Query: 281 PEKSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
W+LD+ C+YHMC +++F T +GG V +G+
Sbjct: 298 --DQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGD 332
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 170 bits (430), Expect = 6e-41
Identities = 109/328 (33%), Positives = 183/328 (55%), Gaps = 16/328 (4%)
Query: 3 GSKWDIEKFTGSND-FGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKS 61
G K+++ KF G F + + +M+ +L QQ +AL G+++ P ++ E+ E+ +KA S
Sbjct: 3 GVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAAS 62
Query: 62 AIVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQ 121
AI L L D V+ ++ E +A + K E+LYM+K+L ++ LK+QLY+ M E +
Sbjct: 63 AIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSH 122
Query: 122 LTEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALR 181
L N ++ LAN+ V +E+EDK ++LL SLP S++ TIL+GK+ + L++V +AL
Sbjct: 123 LNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKD-SIQLKDVTSALL 181
Query: 182 TKELTKFKDMKVDEGSEGLNVTRGRNEHRGKGK-GKSRSKSRSKGFDKSKYK-CFLCHKQ 239
E K + + G + +RGR+ R G+S ++ +SK KSK + C+ C +
Sbjct: 182 LNE--KMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQP 239
Query: 240 GHFKKDCPD-KGGDGSPSVQVAEASNEEGYESAGALVVTSWEPEK---------SWVLDS 289
GHFK+DCP+ K G G S Q + + ++ +V+ E E+ WV+D+
Sbjct: 240 GHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTESEWVVDT 299
Query: 290 GCSYHMCPRKEYFETLILKEGGVVRLGN 317
SYH P ++ F + + G V++GN
Sbjct: 300 AASYHATPVRDLFCRYVAGDYGNVKMGN 327
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 167 bits (423), Expect = 4e-40
Identities = 116/336 (34%), Positives = 174/336 (51%), Gaps = 31/336 (9%)
Query: 5 KWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSAIV 64
K+D+ F L +VKM+A+L QQ +AL G + + +EK+ KA S I
Sbjct: 212 KYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRD-RKAMSYIH 270
Query: 65 LCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLTE 124
L L + +L++V +E AA + K E + MTK L + LKQ L+ K+ + S+ + L+
Sbjct: 271 LHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSA 330
Query: 125 FNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTKE 184
F +I+ DL ++EV ++ED L+LLCSLP S+ +F+DTILY ++ T TL+EV AL KE
Sbjct: 331 FKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRD-TLTLKEVYDALHVKE 389
Query: 185 LTKFKDMKVDEGS----EGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKS--KYK-CFLCH 237
K K M EGS EGL V + E K + + +S S +G KS +YK C C
Sbjct: 390 --KMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCK 447
Query: 238 KQGHFKKDC----------------PDKGGDGSPSVQVAEASNEEGYESAGALVVTSWEP 281
+ GH +C K +G +V E S+ E + TS
Sbjct: 448 RDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS--- 504
Query: 282 EKSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
W+L++ C YHMCP +++F T + G V +G+
Sbjct: 505 -DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGD 539
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411934|pir||G84581 copia-like retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1137
Score = 164 bits (414), Expect = 4e-39
Identities = 102/307 (33%), Positives = 173/307 (56%), Gaps = 32/307 (10%)
Query: 28 LTQQKCVEALKGEAEM-PATLTQ--EEKREMVD---KAKSAIVLCLGDKVLRDVAREATA 81
L ++ + LK E E PA Q EE++ +D KA I + +GDKVLR++ TA
Sbjct: 7 LVERAPLPPLKEEDESDPAKKKQRIEEEKARIDQDEKAMDMIFINVGDKVLRNIENSKTA 66
Query: 82 ASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLTEFNKILDDLANIEVNMED 141
A A + LY+ KSL +R L+ ++Y+++M +SK++ E + EF K++ DL N+++ + D
Sbjct: 67 AEAWATLDKLYLVKSLPNRVYLQLKVYNYRMQDSKTLEENVDEFQKMISDLNNLQIQVPD 126
Query: 142 EDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTKELTKFKDMKVDEG----- 196
E +A+L+L +LP S++ K+T+ YG+EG L++V +A ++KEL +++ G
Sbjct: 127 EVQAILILSALPDSYDMLKETLKYGREG-IKLDDVISAAKSKEL----ELRDSSGGSRPV 181
Query: 197 SEGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKKDC------PDKG 250
EGL V RG+++ RG KS + K C++C K+GHFK+ C
Sbjct: 182 GEGLYV-RGKSQARGSDGPKS---------TEGKKVCWICGKEGHFKRQCYKWLEKNKAN 231
Query: 251 GDGSPSVQVAEASNEEGYESAGALVVTSWEPEKSWVLDSGCSYHMCPRKEYFETLILKEG 310
G G ++ +A + G ++ + + ++ W++D+GCS+HM PRKEY + +
Sbjct: 232 GAGETALVKDDAQDLVGLVASEVNMSEGKDDQEEWIMDTGCSFHMTPRKEYLMDFVEAKS 291
Query: 311 GVVRLGN 317
G VR+ N
Sbjct: 292 GKVRMAN 298
>ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa (japonica
cultivar-group)] gi|40538906|gb|AAR87163.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1322
Score = 162 bits (410), Expect = 1e-38
Identities = 110/326 (33%), Positives = 175/326 (52%), Gaps = 18/326 (5%)
Query: 5 KWDIEKFTGSNDFGL*KVKMQAILTQQKCV-EALKGEAEMPATLTQEEKREMVDKAKSAI 63
K+D+ F L +VKM+A+L Q + EAL+ + T E++ KA S I
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64
Query: 64 VLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLT 123
L L + +L++V ++ TAA + K ES+ M+K L + +K +L+S K+ ES S+ ++
Sbjct: 65 QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124
Query: 124 EFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTK 183
F +I+ DL ++EV +DED LLLLCSLP S+ +F+ TIL ++ TL EV AL+ +
Sbjct: 125 VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRD-ELTLAEVYEALQNR 183
Query: 184 ELTKFKDMKVDEGSEGLNV-TRGRNEHRGKGKGKSRSKSRSKGFDKSKYK--CFLCHKQG 240
E K S+G + RGR+E R KS+S+G KS+ K C C K+
Sbjct: 184 EKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKN 243
Query: 241 HFKKDC------PDKGGDGSPSVQVAEASNEEGYESAGALVVTSW--EPEKSWVLDSGCS 292
HF ++C + DG SV ++ E +S LVV + W+LD+ CS
Sbjct: 244 HFIEECWKLQNKEKRKSDGKASV----VTSAENSDSGDCLVVFAGYVASHDEWILDTACS 299
Query: 293 YHMCPRKEYFETL-ILKEGGVVRLGN 317
+H+C +++F + ++ VVR+G+
Sbjct: 300 FHICINRDWFSSYKSVQNEDVVRMGD 325
>emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultivar-group)]
Length = 432
Score = 162 bits (410), Expect = 1e-38
Identities = 103/315 (32%), Positives = 166/315 (52%), Gaps = 43/315 (13%)
Query: 5 KWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSAIV 64
K+D+ KF G +FGL + +++ +L QQ+ +ALKG PA + ++ EM +A + I
Sbjct: 43 KFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKGVK--PAKMEDDDCEEMQLQAAATIR 100
Query: 65 LCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLTE 124
CL D+++ V E + + K E+ +M+K+L +++ LKQ+LY KM E ++ +
Sbjct: 101 RCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQEGADLTAHVNV 160
Query: 125 FNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTKE 184
FN+++ DL ++V ++DEDKA++LLCSLP+S+EH + KEG E QA
Sbjct: 161 FNQLVTDLVKMDVEVDDEDKAIVLLCSLPESYEH---VMRKNKEG----ETSQA------ 207
Query: 185 LTKFKDMKVDEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKK 244
EGL V H+ K K K KCF C + GH ++
Sbjct: 208 -------------EGLLVKEDHAGHKVKKNKK-----------KKMVKCFRCDEWGHIRR 243
Query: 245 DCPDKGGDGSPSVQVAEASNEEGYESAGALVVTSWEPE--KSWVLDSGCSYHMCPRKEYF 302
+CP G VA +SN+ + L ++S + + ++W+LDS S+H+ PRKE+F
Sbjct: 244 ECPTL--KGKAKANVATSSNDSDSDGCDLLTMSSAQSKDAEAWILDSASSFHVTPRKEWF 301
Query: 303 ETLILKEGGVVRLGN 317
+ E G V LG+
Sbjct: 302 SSYKSGEFGFVYLGD 316
>dbj|BAA97536.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1338
Score = 161 bits (407), Expect = 3e-38
Identities = 110/342 (32%), Positives = 177/342 (51%), Gaps = 39/342 (11%)
Query: 9 EKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEE----------------- 51
E+F G D+ L K K+ A L +ALK + E + E
Sbjct: 18 ERFDGRGDYTLWKRKLLAQLEVMGISDALKEKEEKKEAVETERVKVVSSSSERRREEHKK 77
Query: 52 ---KREMVDKAKSAIVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLY 108
+ E +KA+S I+L + D +LR + E TAA M++ + LY++ L+ R LK++L+
Sbjct: 78 DHSREEKENKARSVIILSVADNILRRIRTEETAAGMISVLDKLYLSDPLSSRISLKRKLF 137
Query: 109 SFKMMESKSISEQLTEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKE 168
FKM E+K++ E + +F +I++DL ++V + DEDKA +LL SLP+ E K ++ Y +E
Sbjct: 138 EFKMSENKAVEENIEDFFRIVEDLEKLDVYVSDEDKAFMLLLSLPRKLEQLKYSLDYCEE 197
Query: 169 GTATLEEVQAALRTKELTKFK-DMKVDEGSEGLNV-TRGRNEHR---GKGKGKSRSKSRS 223
TL V A+ KEL + + + +E + L++ R R+++R KGK K RS++R
Sbjct: 198 -PLTLGRVMTAIYKKELEVAQIERQTEEEEKRLSLRERERSDYREEQAKGKEKVRSEARE 256
Query: 224 KGFDKSKYKCFLCHKQGHFKKDC--PDKGGDGSPSVQVAEASNEEGYESAGALVVT---- 277
K K C+ C ++GH K +C K SV+ E+S + +V+
Sbjct: 257 K-----KGPCWRCGQKGHVKTECFQEKKNKSRKKSVRYEESSAQSIVSGGSVFMVSEAAA 311
Query: 278 --SWEPEKSWVLDSGCSYHMCPRKEYFETLILKEGGVVRLGN 317
S + W+ D+GC+ HM RKE+FE L+ E G V + N
Sbjct: 312 RASKGSSEEWICDTGCTSHMSSRKEWFEDLVFSESGNVSMAN 353
>gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534554|ref|NP_921579.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 382
Score = 160 bits (406), Expect = 3e-38
Identities = 97/302 (32%), Positives = 172/302 (56%), Gaps = 22/302 (7%)
Query: 4 SKWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSAI 63
SK+++ KF G+ +F L +++++ +L QQ +AL + MP + ++ EM +A + I
Sbjct: 7 SKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKAL--QETMPEKIDADKWNEMKAQAAATI 64
Query: 64 VLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLT 123
L L D V+ V E + + K SL+M+KSL + LKQQLY ++ E + + +
Sbjct: 65 RLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVD 124
Query: 124 EFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTK 183
FN+++ DL+ ++V ++DEDKA++LLCSLP S+EH T+ +GK+ T EE+ ++L +
Sbjct: 125 VFNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKD-TVKTEEIISSLLAR 183
Query: 184 ELTKFKDMKVDEGSEGLN-VTRGRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGHF 242
+L + K + + S+G + + + +++H SKS+ KG +C+ CH+ GH
Sbjct: 184 DLRRSKKNEATKASQGKSLLVKDKHDHEA-----GVSKSKEKG-----ARCYKCHEFGHI 233
Query: 243 KKDCP----DKGGDGSPSVQVAEASNEEGYESAGALVVTSWEPEKSWVLDSGCSYHMCPR 298
+++CP KGG S +A ++ S L V+ ++W+LDS SYH+ +
Sbjct: 234 RRNCPLLKKRKGGIAS----LAARGDDSDSGSHEILTVSDEMSGEAWMLDSASSYHVTSK 289
Query: 299 KE 300
+E
Sbjct: 290 RE 291
>gb|AAP53029.1| putative retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|37532880|ref|NP_920742.1| putative
retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|16905223|gb|AAL31093.1| putative
retrotransposon-related protein [Oryza sativa]
Length = 1229
Score = 160 bits (404), Expect = 6e-38
Identities = 111/326 (34%), Positives = 174/326 (53%), Gaps = 18/326 (5%)
Query: 5 KWDIEKFTGSNDFGL*KVKMQAILTQQKCV-EALKGEAEMPATLTQEEKREMVDKAKSAI 63
K+D+ F L +VKM+A+L Q + EAL+ + T E++ KA S I
Sbjct: 2 KYDLPLQDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 61
Query: 64 VLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLT 123
L L + +L+ V +E TAA + K ES+ M+K L + +K +L+S K+ ES S+ ++
Sbjct: 62 QLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 121
Query: 124 EFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTK 183
F +I+ DL ++EV +DED LLLLCSLP + +F+DTIL ++ TL EV AL+ +
Sbjct: 122 VFKEIIADLVSMEVQFDDEDLGLLLLCSLPSLYANFRDTILLSRD-ELTLAEVYEALQNR 180
Query: 184 ELTKFKDMKVDEGSEGLNV-TRGRNEHRGKGKGKSRSKSRSKGFDKSKYK--CFLCHKQG 240
E K S+G + RGR+E R R KS+S+G KS+ K C C K+
Sbjct: 181 EKMKGMVQSDASSSKGKALQVRGRSEQRTYNDSNDRDKSQSRGRSKSRGKKFCKYCKKKN 240
Query: 241 HFKKDC------PDKGGDGSPSVQVAEASNEEGYESAGALVVTSW--EPEKSWVLDSGCS 292
HF ++C + DG SV ++ E +SA LV + W+LD+ C
Sbjct: 241 HFIEECWKLQNKEKRKSDGKASV----VTSAENSDSADCLVFFAGCVASHDEWILDTACL 296
Query: 293 YHMCPRKEYFET-LILKEGGVVRLGN 317
+ +C +++F + ++ G VVR+G+
Sbjct: 297 FLICINRDWFSSHKSVQNGDVVRMGD 322
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,874,267
Number of Sequences: 2540612
Number of extensions: 20523695
Number of successful extensions: 86088
Number of sequences better than 10.0: 833
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 470
Number of HSP's that attempted gapping in prelim test: 84318
Number of HSP's gapped (non-prelim): 1508
length of query: 317
length of database: 863,360,394
effective HSP length: 128
effective length of query: 189
effective length of database: 538,162,058
effective search space: 101712628962
effective search space used: 101712628962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)
Medicago: description of AC135464.1