BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135463.3 + phase: 0 /pseudo
(924 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07... 711 0.0
gb|AAT73694.1| putative polyprotein [Oryza sativa (japonica cult... 691 0.0
ref|NP_918193.1| putative retroelement polyprotein [Oryza sativa... 689 0.0
gb|AAP52925.1| putative retroelement [Oryza sativa (japonica cul... 689 0.0
gb|AAP52842.1| putative retroelement [Oryza sativa (japonica cul... 689 0.0
gb|AAP52583.1| putative polyprotein [Oryza sativa (japonica cult... 689 0.0
emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar... 689 0.0
gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-... 689 0.0
gb|AAP52358.1| putative retroelement [Oryza sativa (japonica cul... 688 0.0
emb|CAE05068.2| OSJNBa0094P09.7 [Oryza sativa (japonica cultivar... 688 0.0
gb|AAP52160.1| putative retroelement [Oryza sativa (japonica cul... 688 0.0
ref|XP_471244.1| OSJNBa0056L23.4 [Oryza sativa (japonica cultiva... 688 0.0
ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cu... 688 0.0
emb|CAD39932.2| OSJNBa0091C12.10 [Oryza sativa (japonica cultiva... 688 0.0
gb|AAT73686.1| putative polyprotein [Oryza sativa (japonica cult... 688 0.0
ref|XP_475568.1| putative polyprotein [Oryza sativa (japonica cu... 687 0.0
ref|XP_471222.1| OSJNBb0016B03.11 [Oryza sativa (japonica cultiv... 687 0.0
gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cult... 687 0.0
gb|AAS90688.2| putative polyprotein [Oryza sativa (japonica cult... 687 0.0
gb|AAP53126.1| putative retroelement [Oryza sativa (japonica cul... 687 0.0
>emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07863 probable
polyprotein - pineapple retrotransposon dea1 (fragment)
Length = 871
Score = 711 bits (1836), Expect = 0.0
Identities = 351/561 (62%), Positives = 430/561 (76%), Gaps = 1/561 (0%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPLPRID 66
EL+ QL+DLLDK F+RPS SPWGAPVL VKKKDG++RLC+DYR+LNKVTIKN+YPLPRID
Sbjct: 32 ELRAQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCVDYRELNKVTIKNKYPLPRID 91
Query: 67 DLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAPGVFM 126
DL DQL G+ V+SKIDL+SGYHQ+K+K ED+ KTA RTRYGHYE+ VMPFG+TNAP FM
Sbjct: 92 DLFDQLQGSCVYSKIDLQSGYHQLKIKPEDVSKTAFRTRYGHYEFAVMPFGLTNAPTAFM 151
Query: 127 EYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCEFWLS 186
+ MNR+F YLD+FVVVFIDDIL+YSR++ +H HL+IVL VL+EK+LY KL KCEFWL
Sbjct: 152 DLMNRVFKPYLDRFVVVFIDDILVYSRSDADHEEHLRIVLQVLREKELYVKLKKCEFWLR 211
Query: 187 EVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPL 246
EV+F GH+ISGSGIAVDP K++A+ W SVTEIRSFLGLAGYYRRF+E F+KL+ PL
Sbjct: 212 EVAFLGHLISGSGIAVDPKKIEAIKDWPRLTSVTEIRSFLGLAGYYRRFVERFAKLSTPL 271
Query: 247 TQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVVLMQD 306
T+LT KG F+W+ CE SF ELKQRL T PIL LP +VVY DAS GLG VLMQD
Sbjct: 272 TRLTHKGVKFIWNDACERSFQELKQRLTTAPILTLPVAGAGYVVYSDASLNGLGCVLMQD 331
Query: 307 GKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYLFDQK 366
KV+AYASR L+ +EKNYPTHDLELAAVV LK+WRHYLYG R EV++DHKSLKYLF QK
Sbjct: 332 DKVIAYASRQLKEYEKNYPTHDLELAAVVFALKLWRHYLYGERCEVYTDHKSLKYLFTQK 391
Query: 367 ELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSAL-MVKEFDLLEQFRDLS 425
ELN+RQRRWLELLKDYD + YHPGKANVVADALSRK++ A+ +V + L+EQ + L
Sbjct: 392 ELNLRQRRWLELLKDYDLTILYHPGKANVVADALSRKSMENLAMHVVTQPRLIEQMKRLE 451
Query: 426 LVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQGVLRF 485
L ++L L + L+ I+E Q DV+L + DF +D G++RF
Sbjct: 452 LEIVTPDTPMRLMTLVVQPTLLDRIKEKQASDVELQKIKGKMVDGCTGDFTLDGDGLMRF 511
Query: 486 RGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFVYACLT 545
RGRIC+P + +K+ IL+E+H++ +I P TKMY DLK L+WW G+K+DV +FV CLT
Sbjct: 512 RGRICVPADSGIKEDILQEAHRAPYAIHPGGTKMYKDLKLLYWWPGIKKDVGEFVAKCLT 571
Query: 546 CLKSKVEHQKPAELLTPLDVP 566
C + K EH+ PA L L +P
Sbjct: 572 CQQVKAEHRVPAGKLQSLPIP 592
>gb|AAT73694.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1778
Score = 691 bits (1784), Expect = 0.0
Identities = 345/566 (60%), Positives = 431/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 852 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 911
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 912 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 971
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS+TEE+H HL++VL L+E +LYAKLSKCE
Sbjct: 972 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQTEEDHQHHLRLVLGKLREHQLYAKLSKCE 1031
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV++W+ PK+VT+IRSFLGLAGYYRRFIE FSK+
Sbjct: 1032 FWLSEVKFLGHVISAKGVAVDPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKI 1091
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1092 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1151
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1152 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1211
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1212 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQ 1270
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1271 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1327
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1328 GTLWNGKRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1387
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1388 ALCDVCQRVKAEHQRPAGLLQPLQVP 1413
>ref|NP_918193.1| putative retroelement polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1796
Score = 689 bits (1779), Expect = 0.0
Identities = 343/566 (60%), Positives = 430/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 870 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 929
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 930 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 989
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 990 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1049
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV+ W+ PK+VT++RSFLGLAGYYRRFIE FSK+
Sbjct: 1050 FWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKI 1109
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1110 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1169
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1170 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1229
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1230 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQ 1288
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1289 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFAEDEH 1345
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1346 GTLWNGNRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1405
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1406 ALCDVCQRVKAEHQRPAGLLQPLQVP 1431
>gb|AAP52925.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532672|ref|NP_920638.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22725933|gb|AAN04943.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1803
Score = 689 bits (1778), Expect = 0.0
Identities = 342/566 (60%), Positives = 431/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAP++ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 877 NELAEVKKQLEELKEKGYIRPSTSPWGAPMIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 936
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 937 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 996
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 997 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1056
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV++W+ PK+VT++RSFLGLAGYYRRFIE FSK+
Sbjct: 1057 FWLSEVKFLGHVISAKGVAVDPETVTAVTEWKQPKTVTQVRSFLGLAGYYRRFIENFSKI 1116
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1117 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1176
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1177 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1236
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1237 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRSIPPELNQQ 1295
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1296 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1352
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1353 GTLWNGKRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1412
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1413 ALCDVCQRVKAEHQRPAGLLQPLQVP 1438
>gb|AAP52842.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532506|ref|NP_920555.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|13992680|gb|AAK51574.1| Putative retroelement [Oryza
sativa]
Length = 1810
Score = 689 bits (1778), Expect = 0.0
Identities = 343/566 (60%), Positives = 430/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 884 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 943
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 944 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 1003
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 1004 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1063
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV+ W+ PK+VT++RSFLGLAGYYRRFIE FSK+
Sbjct: 1064 FWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKI 1123
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1124 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1183
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1184 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1243
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1244 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNNLNVRGIPPELSQQ 1302
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1303 MEALNL--NIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1359
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1360 GTLWNGNRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1419
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1420 ALCDVCQRVKAEHQRPAGLLQPLQVP 1445
>gb|AAP52583.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531988|ref|NP_920296.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857586|gb|AAN09860.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1820
Score = 689 bits (1778), Expect = 0.0
Identities = 343/566 (60%), Positives = 430/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 894 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 953
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 954 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 1013
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 1014 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1073
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV+ W+ PK+VT++RSFLGLAGYYRRFIE FSK+
Sbjct: 1074 FWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKI 1133
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1134 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1193
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1194 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1253
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1254 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQ 1312
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1313 MEALNL--SIVSRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1369
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1370 GTLWNGKRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1429
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1430 ALCDVCQRVKAEHQRPAGLLQPLQVP 1455
>emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar-group)]
gi|50926829|ref|XP_473331.1| OSJNBa0091D06.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1762
Score = 689 bits (1778), Expect = 0.0
Identities = 345/564 (61%), Positives = 425/564 (75%), Gaps = 2/564 (0%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+K+Q+E+L K +VRPS+SPWGAPVLLVKKKDG+ R+ IDYR LN+VTIKN+YPL
Sbjct: 847 NELAEIKRQIEELESKGYVRPSSSPWGAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPL 906
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+K++ ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 907 PRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAP 966
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN+IF YLD+FVVVFIDDILIYS+ EEEHA HL++++ L++ +L+AK SKCE
Sbjct: 967 AFFMNLMNKIFMEYLDQFVVVFIDDILIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCE 1026
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWL V+F GH+IS +G+ VDPSKV+AV W PK+V+EIRSFLGLAGYYRRFIEGFSKL
Sbjct: 1027 FWLDRVAFLGHVISSNGVEVDPSKVEAVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKL 1086
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+T+L K K F W A CE SF E+K+RL T P+L LP + F ++ DAS+ GLG V
Sbjct: 1087 ARPMTELLKKEKKFQWSAACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLGCV 1146
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQ+ KVVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R EV++DHKSLKY+
Sbjct: 1147 LMQERKVVAYASRQLRPHEANYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYI 1206
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEFDLLEQFR 422
F Q ELNMRQRRWLEL+KDYD G++YHPGKANVVADALSRK A + + D L R
Sbjct: 1207 FTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKAYCNVAQIRPDQDHL--CR 1264
Query: 423 DLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQGV 482
+L + QS L + + IREAQ+ D + +L+ KD++F +DDQG
Sbjct: 1265 ELEKLRLTVVQSGVPASLTVQPTLESQIREAQKDDEGIKELIKRIQEKKDTNFSIDDQGT 1324
Query: 483 LRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFVYA 542
+ RIC+P EL+ LIL+E+H+S+ SI P +TKMY D+K FWW+G+KRDVA++V
Sbjct: 1325 VWCGPRICVPAKKELRDLILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVAL 1384
Query: 543 CLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL +P
Sbjct: 1385 CDICQRVKAEHQRPAGLLQPLPIP 1408
>gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1795
Score = 689 bits (1777), Expect = 0.0
Identities = 343/566 (60%), Positives = 431/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 869 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 928
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 929 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 988
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 989 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1048
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV++W+ PK+VT+IRSFLGLAGYYRRFIE FSK+
Sbjct: 1049 FWLSEVKFLGHVISAKGVAVDPDTVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKI 1108
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1109 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1168
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1169 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1228
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1229 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRSIPPELNQQ 1287
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1288 MEALNL--NIVGRGF-LAALEAQPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1344
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PD+ ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1345 GTLWNGKRVCVPDDRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1404
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1405 ALCDVCQRVKAEHQRPAGLLQPLQVP 1430
>gb|AAP52358.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531538|ref|NP_920071.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|20043037|gb|AAM08845.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1728
Score = 688 bits (1776), Expect = 0.0
Identities = 343/566 (60%), Positives = 428/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 879 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 938
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 939 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 998
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDIL+YS+TEE+H HL++VL L+E +LYAKLSKCE
Sbjct: 999 AFFMNLMNKVFMEYLDKFVVVFIDDILVYSQTEEDHQHHLRLVLGKLREHQLYAKLSKCE 1058
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV+ W PK+VT+IRSFLGLAGYYRRFIE FSK+
Sbjct: 1059 FWLSEVKFLGHVISAKGVAVDPETVTAVTDWRQPKTVTQIRSFLGLAGYYRRFIENFSKI 1118
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DA++ GLG V
Sbjct: 1119 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDAARQGLGCV 1178
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+ E+++DHKSLKY+
Sbjct: 1179 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNCCEIYTDHKSLKYI 1238
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVK--EFDLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1239 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPLELNQQ 1297
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1298 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMRGLLKNMKQGKATGFTEDEH 1354
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLKK +WW +KR++A+FV
Sbjct: 1355 GTLWNGNRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKKKYWWVSMKREIAEFV 1414
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1415 ALCDVCQRVKAEHQRPAGLLQPLQVP 1440
>emb|CAE05068.2| OSJNBa0094P09.7 [Oryza sativa (japonica cultivar-group)]
Length = 1804
Score = 688 bits (1776), Expect = 0.0
Identities = 343/566 (60%), Positives = 431/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 878 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 937
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 938 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 997
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 998 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1057
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV++W+ PK+VT+IRSFLGLAGYYRRFIE FSK+
Sbjct: 1058 FWLSEVKFLGHVISAKGVAVDPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKI 1117
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1118 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1177
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1178 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1237
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1238 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQ 1296
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1297 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAASFTEDEH 1353
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PD+ ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1354 GTLWNGKRVCVPDSRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1413
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1414 ALCDVCQRVKAEHQRPAGLLQPLQVP 1439
>gb|AAP52160.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531142|ref|NP_919873.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22725911|gb|AAN04921.1| Putative retroelement [Oryza
sativa]
Length = 1786
Score = 688 bits (1775), Expect = 0.0
Identities = 343/566 (60%), Positives = 431/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 860 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 919
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 920 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 979
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 980 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1039
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV++W+ PK+VT+IRSFLGLAGYYRRFIE FSK+
Sbjct: 1040 FWLSEVKFLGHVISAKGVAVDPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKI 1099
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1100 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1159
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1160 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1219
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1220 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQ 1278
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1279 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMRQGKAAGFTEDEH 1335
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PD+ ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1336 GTLWNGKRVCVPDSRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1395
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1396 ALCDVCQRVKAEHQRPAGLLQPLQVP 1421
>ref|XP_471244.1| OSJNBa0056L23.4 [Oryza sativa (japonica cultivar-group)]
gi|38347259|emb|CAE05306.2| OSJNBa0056L23.4 [Oryza sativa
(japonica cultivar-group)]
Length = 1785
Score = 688 bits (1775), Expect = 0.0
Identities = 343/566 (60%), Positives = 429/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 859 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 918
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 919 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 978
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 979 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1038
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV+ W+ PK+VT+IRSFLGLAGYYRRFIE FSK+
Sbjct: 1039 FWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKI 1098
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1099 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1158
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1159 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1218
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSR + H + L V+ +L +Q
Sbjct: 1219 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRNS-HCNTLNVRGIPPELNQQ 1277
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1278 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1334
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1335 GTLWNGNRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1394
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1395 ALCDVCQRVKAEHQRPAGLLQPLQVP 1420
>ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1014
Score = 688 bits (1775), Expect = 0.0
Identities = 341/565 (60%), Positives = 425/565 (74%), Gaps = 4/565 (0%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+K+Q+E+L K +VRPS+SPWGAPVLLVKKKDG+ R+ IDYR LN+VTIKN+YPL
Sbjct: 99 NELAEVKRQIEELESKGYVRPSSSPWGAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPL 158
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+K++ ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 159 PRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAP 218
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN+IF YLD+FVVVFIDDILIYS+ EEEHA HL++++ L++ +L+AK SKCE
Sbjct: 219 AFFMNLMNKIFMEYLDQFVVVFIDDILIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCE 278
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWL V+F GH+IS +G+ VDPSKV+AV W PK+V+EIRSFLGLAGYYRRFIEGFSKL
Sbjct: 279 FWLDRVAFLGHVISSNGVEVDPSKVEAVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKL 338
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+T+L K K F W CE SF E+K+RL T P+L LP + F ++ DAS+ GLG V
Sbjct: 339 ARPMTELLKKEKKFQWSTACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLGCV 398
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQ+ KVVAYASR LR HE NYPTHDLELAAV+ LKIWRHYL G+R EV++DHKSLKY+
Sbjct: 399 LMQERKVVAYASRQLRPHEVNYPTHDLELAAVIHALKIWRHYLIGNRCEVYTDHKSLKYI 458
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKT-LHMSALMVKEFDLLEQF 421
F Q ELNMRQRRWLEL+KDYD G++YHPGKANVVADALSRK +++ + + L +
Sbjct: 459 FTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKAYCNIAQIRPDQGQLCREL 518
Query: 422 RDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQG 481
L L QS L + + IREAQ+ D + +L+ KD++F +DDQG
Sbjct: 519 EKLRLT---VVQSGVPASLTVQPTLESQIREAQKEDEGIKELIERIQEKKDTNFSIDDQG 575
Query: 482 VLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFVY 541
+ + RIC+P EL+ LIL+E+H+S+ SI P +TKMY D+K FWW+G+KRDVA++V
Sbjct: 576 TVWYGPRICVPAKKELRDLILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVA 635
Query: 542 ACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL +P
Sbjct: 636 LCDICQRVKAEHQRPAGLLQPLPIP 660
>emb|CAD39932.2| OSJNBa0091C12.10 [Oryza sativa (japonica cultivar-group)]
gi|50921849|ref|XP_471285.1| OSJNBa0091C12.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1461
Score = 688 bits (1775), Expect = 0.0
Identities = 342/566 (60%), Positives = 429/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 535 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 594
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFS IDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 595 PRIDDLFDQLKGATVFSMIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 654
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 655 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 714
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV+ W+ PK+VT++RSFLGLAGYYRRFIE FSK+
Sbjct: 715 FWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKI 774
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 775 ARPMTQLLKKEEKFVWSPQCEKAFKTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 834
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 835 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 894
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVK--EFDLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 895 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPLELSQQ 953
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 954 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1010
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1011 GTLWNGNRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1070
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1071 ALCDVCQRVKAEHQRPAGLLQPLQVP 1096
>gb|AAT73686.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1498
Score = 688 bits (1775), Expect = 0.0
Identities = 343/566 (60%), Positives = 431/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 572 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 631
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 632 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 691
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS+TEE+H HL++VL L+E +LYAKLSKCE
Sbjct: 692 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQTEEDHQHHLRLVLGKLREHQLYAKLSKCE 751
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV++W+ PK+VT+IRSFLGLAGYYRRFIE FSK+
Sbjct: 752 FWLSEVKFLGHVISAKGVAVDPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKI 811
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 812 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 871
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 872 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 931
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 932 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQ 990
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 991 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1047
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+P++ ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1048 GTLWNGKRVCVPESRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1107
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1108 ALCDVCQRVKAEHQRPAGLLQPLQVP 1133
>ref|XP_475568.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1570
Score = 687 bits (1774), Expect = 0.0
Identities = 342/566 (60%), Positives = 430/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 644 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 703
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG +E+ VM FG+TNAP
Sbjct: 704 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLFEFTVMSFGLTNAP 763
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 764 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 823
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV+ W+ PK+VT++RSFLGLAGYYRRFIE FSK+
Sbjct: 824 FWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKI 883
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 884 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 943
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 944 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1003
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVK--EFDLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1004 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPLELNQQ 1062
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1063 MEALNL--SIVGRGF-LTTLEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1119
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1120 GTLWNGNRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1179
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1180 ALCDVCQRVKAEHQRPAGLLQPLQVP 1205
>ref|XP_471222.1| OSJNBb0016B03.11 [Oryza sativa (japonica cultivar-group)]
gi|38347555|emb|CAD39386.2| OSJNBb0016B03.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1374
Score = 687 bits (1774), Expect = 0.0
Identities = 342/566 (60%), Positives = 428/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+K+Q++DLL K ++RPS+SPWGAPV+ V+KKD T R+C+DYR LN VTIKN+YPL
Sbjct: 544 NELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPL 603
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++K+ED+ KTA TRYG +E VM FG+TNAP
Sbjct: 604 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAP 663
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYSRT+EEH HL++ L L+E +LYAK SKCE
Sbjct: 664 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCE 723
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDPS V++V+ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+
Sbjct: 724 FWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKI 783
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+T+L K + W +CE SF ELK RL + PILILP P++ F VY DASKLGLG V
Sbjct: 784 AKPMTRLLQKDVKYKWSEECEQSFQELKNRLVSAPILILPDPKKGFQVYCDASKLGLGCV 843
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDGKVVAYASR LR HEKNYPTHDLELAAVV LKIWRHYL+G+R EV++DHKSLKY+
Sbjct: 844 LMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYI 903
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKE--FDLLEQ 420
F Q +LNMRQRRWLEL+KDYD G++YHPGKANVVADALSRK + +A ++ +L ++
Sbjct: 904 FTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVADALSRKG-YCNATEGRQLPLELCKE 962
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
F L+L + + + L+ ++ +REAQ D + ++ K F D+Q
Sbjct: 963 FERLNL--GIVSRGF-VAALEAKPTLIDQVREAQVNDCDIQEIKKNMRRGKAIGFLEDEQ 1019
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G + RIC+PDN +LK IL+E+H + SI P +TKMY DLK+ FWW+ +KR++A++V
Sbjct: 1020 GTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKEKFWWASMKREIAEYV 1079
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQKPA LL PL +P
Sbjct: 1080 AVCDVCQRVKAEHQKPAGLLQPLKIP 1105
>gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|54287530|gb|AAV31274.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1400
Score = 687 bits (1774), Expect = 0.0
Identities = 342/566 (60%), Positives = 429/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+K+Q++DLL K ++RPS+SPWGAPV+ V+KKD T R+C+DYR LN VTIKN+YPL
Sbjct: 547 NELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPL 606
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++K+ED+ KTA TRYG +E VM FG+TNAP
Sbjct: 607 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAP 666
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYSRT+EEH HL++ L L+E +LYAK SKCE
Sbjct: 667 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCE 726
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDPS V++V+ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+
Sbjct: 727 FWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKI 786
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+T+L K + W +CE SF ELK RL + PILILP P++ F VY DASKLGLG V
Sbjct: 787 AKPMTRLLQKDVKYKWSEECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKLGLGCV 846
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDGKVVAYASR LR HEKNYPTHDLELAAVV LKIWRHYL+G+R EV++DHKSLKY+
Sbjct: 847 LMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYI 906
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKE--FDLLEQ 420
F Q +LNMRQRRWLEL+KDYD G++YHPGKANVVADALSRK + +A ++ +L ++
Sbjct: 907 FTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVADALSRKG-YCNATEGRQLPLELCQE 965
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
F L+L + + + L+ ++ +REAQ D + ++ K F D+Q
Sbjct: 966 FERLNL--GIVSRGF-VAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQ 1022
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G + RIC+PDN +LK +IL+E+H + SI P +TKMY DLK+ FWW+ +KR++A++V
Sbjct: 1023 GTVWLGERICVPDNKDLKDVILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYV 1082
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQKPA LL PL +P
Sbjct: 1083 AVCDVCQRVKAEHQKPAGLLQPLKIP 1108
>gb|AAS90688.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1789
Score = 687 bits (1774), Expect = 0.0
Identities = 342/566 (60%), Positives = 430/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 863 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 922
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG +E+ VM FG+TNAP
Sbjct: 923 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLFEFTVMSFGLTNAP 982
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDILIYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 983 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1042
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV+ W+ PK+VT++RSFLGLAGYYRRFIE FSK+
Sbjct: 1043 FWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKI 1102
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1103 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1162
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1163 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1222
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVK--EFDLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1223 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPLELNQQ 1281
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1282 MEALNL--SIVGRGF-LTTLEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1338
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PDN ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1339 GTLWNGNRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1398
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1399 ALCDVCQRVKAEHQRPAGLLQPLQVP 1424
>gb|AAP53126.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533074|ref|NP_920839.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22539073|gb|AAN01245.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1785
Score = 687 bits (1773), Expect = 0.0
Identities = 342/566 (60%), Positives = 431/566 (75%), Gaps = 6/566 (1%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPL 62
N AE+KKQLE+L +K ++RPS SPWGAPV+ V+KKD T R+C+DYR LN+VTIKN+YPL
Sbjct: 859 NELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL 918
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
PRIDDL DQL GA VFSKIDLRSGYHQ+++++ED+ KTA TRYG YE+ VM FG+TNAP
Sbjct: 919 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAP 978
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
FM MN++F YLDKFVVVFIDDI+IYS++EE+H HL++VL L+E +LYAKLSKCE
Sbjct: 979 AFFMNLMNKVFMEYLDKFVVVFIDDIMIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCE 1038
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 242
FWLSEV F GH+IS G+AVDP V AV++W+ PK+VT+IRSFLGLAGYYRRFIE FSK+
Sbjct: 1039 FWLSEVKFLGHVISAKGVAVDPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKI 1098
Query: 243 ALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVV 302
A P+TQL K + FVW QCE +F LK++L ++P+LILP + F+VY DAS+ GLG V
Sbjct: 1099 ARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV 1158
Query: 303 LMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLKYL 362
LMQDG VVAYASR LR HE NYPTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+
Sbjct: 1159 LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYI 1218
Query: 363 FDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEF--DLLEQ 420
F Q +LN+RQRRWLEL+KDYD G++YHPGKANVVADALSRK+ H + L V+ +L +Q
Sbjct: 1219 FTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQ 1277
Query: 421 FRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVDDQ 480
L+L + + L L+ L+ IREAQ+ D + L+ K + F D+
Sbjct: 1278 MEALNL--SIVGRGF-LAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEH 1334
Query: 481 GVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQFV 540
G L R+C+PD+ ELK+LIL+E+H+S SI P +TKMY DLK+ +WW +KR++A+FV
Sbjct: 1335 GTLWNGKRVCVPDSRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1394
Query: 541 YACLTCLKSKVEHQKPAELLTPLDVP 566
C C + K EHQ+PA LL PL VP
Sbjct: 1395 ALCDVCQRVKAEHQRPAGLLQPLQVP 1420
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.341 0.151 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,438,486,147
Number of Sequences: 2540612
Number of extensions: 58130997
Number of successful extensions: 271727
Number of sequences better than 10.0: 35052
Number of HSP's better than 10.0 without gapping: 2573
Number of HSP's successfully gapped in prelim test: 32479
Number of HSP's that attempted gapping in prelim test: 203912
Number of HSP's gapped (non-prelim): 37661
length of query: 924
length of database: 863,360,394
effective HSP length: 137
effective length of query: 787
effective length of database: 515,296,550
effective search space: 405538384850
effective search space used: 405538384850
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 80 (35.4 bits)
Medicago: description of AC135463.3