BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135461.15 + phase: 0 /pseudo
(1184 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF26780.1| unknown protein [Arabidopsis thaliana] 839 0.0
ref|NP_187084.3| FtsH protease family protein [Arabidopsis thali... 775 0.0
ref|YP_005097.1| cell division protein ftsH [Thermus thermophilu... 162 8e-38
dbj|BAA96090.1| FtsH [Thermus thermophilus] 162 8e-38
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain ... 159 4e-37
ref|YP_145915.1| cell-division protein and general stress protei... 159 5e-37
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain ... 159 5e-37
ref|ZP_00423071.1| Peptidase M41, FtsH [Burkholderia vietnamiens... 157 2e-36
ref|ZP_00008180.1| COG0465: ATP-dependent Zn proteases [Rhodobac... 157 2e-36
gb|EAK88317.1| predicted AFG1 ATpase family AAA ATpase [Cryptosp... 157 2e-36
ref|NP_463751.1| hypothetical protein lmo0220 [Listeria monocyto... 155 6e-36
ref|ZP_00234819.1| ATP-dependent metalloprotease FtsH [Listeria ... 155 6e-36
emb|CAI72971.1| metalloprotease/cell division cycle protein (Fts... 155 8e-36
ref|NP_975050.1| ATP-dependent zinc metallopeptidase FtsH [Mycop... 155 1e-35
emb|CAB61952.1| FtsH metalloprotease-like protein [Arabidopsis t... 155 1e-35
ref|NP_387950.1| cell-division protein and general stress protei... 154 1e-35
ref|NP_469597.1| ftsH [Listeria innocua Clip11262] gi|16412681|e... 154 1e-35
ref|NP_814059.1| cell division protein FtsH [Enterococcus faecal... 154 1e-35
ref|YP_012841.1| ATP-dependent metalloprotease FtsH [Listeria mo... 154 1e-35
gb|AAM74002.1| FtsH [Listeria monocytogenes] 154 1e-35
>gb|AAF26780.1| unknown protein [Arabidopsis thaliana]
Length = 1293
Score = 839 bits (2168), Expect = 0.0
Identities = 469/952 (49%), Positives = 638/952 (66%), Gaps = 87/952 (9%)
Query: 48 QNNHTVLSQPTNSTLVLSQCC--LTKQLILRALFCFAVGVSTFGTFQIAPAFALPTIPWV 105
+ N VLS NS +TK L+ ALFC A+G+S +FQ APA A+P + V
Sbjct: 87 EGNELVLSSEYNSAKTRESVIQFVTKPLVY-ALFCIAIGLSPIRSFQ-APALAVPFVSDV 144
Query: 106 QFLSKNKENKNQ--------HEYSDCTQKVLDTVPSLLRTIEEVRKGNGDFEDVKRALEF 157
+ K + + + HE+SD T+++L+TV LL+TIE VRK NG+ +V AL+
Sbjct: 145 IWKKKKERVREKEVVLKAVDHEFSDYTRRLLETVSVLLKTIEIVRKENGEVAEVGAALDA 204
Query: 158 VKLKKYEMEKEILERMHPVLMDLKEELRLLQIKEGEISWQMAEVNREHRKLMG------- 210
VK++K +++KEI+ ++ + L++E LL + +I + + ++ KL+
Sbjct: 205 VKVEKEKLQKEIMSGLYRDMRRLRKERDLLMKRADKIVDEALSLKKQSEKLLRKGAREKM 264
Query: 211 -----------------WE-MDMKDNVVNEVEKKVL----------DKRMVELEKKWNEI 242
WE +D D+++ + E L ++ VEL K +N
Sbjct: 265 EKLEESVDIMESEYNKIWERIDEIDDIILKKETTTLSFGVRELIFIERECVELVKSFNRE 324
Query: 243 LVKIDEMEDV-------ISRKETVA-------------LSYGVLEI----CFIQRECENL 278
L + E V +SR E + VLE+ F R+ +
Sbjct: 325 LNQ-KSFESVPESSITKLSRSEIKQELVNAQRKHLEQMILPNVLELEEVDPFFDRDSVDF 383
Query: 279 VERFKQEIKQ-KKIGSSFASSVNKLSKSVIQEDLETVQRKQIEQTILPSIVDVDDLGPFF 337
R K+ +++ KK+ + + K K +E L +K E + + + F
Sbjct: 384 SLRIKKRLEESKKLQRDLQNRIRKRMKKFGEEKLFV--QKTPEGEAVKGFPEAEVKWMFG 441
Query: 338 HQDSV---DFAQHLERSLKDSREQQK-NLEAQIRKDMQYDKEKRSVVYSPEEEERILLDR 393
++ V HL K +E+ K +L+ ++ +D+ + K+ Y + +E++LLDR
Sbjct: 442 EKEVVVPKAIQLHLRHGWKKWQEEAKADLKQKLLEDVDFGKQ-----YIAQRQEQVLLDR 496
Query: 394 DRVVSKTWYNEEKNRWEMDPVAVPHAVSKKLIEHVRIRYDGRAMYIALKGEDKEFYVDIK 453
DRVVSKTWYNE+K+RWEMDP+AVP+AVS+KLI+ RIR+D MY+ALKG+DKEFYVDIK
Sbjct: 497 DRVVSKTWYNEDKSRWEMDPMAVPYAVSRKLIDSARIRHDYAVMYVALKGDDKEFYVDIK 556
Query: 454 EFERLFEYIGGFDVLYRKMLACGIPTAVHLMWIPLSELSVHQRISVILRFPLRFLSGRWN 513
E+E LFE GGFD LY KMLACGIPT+VHLMWIP+SELS+ Q+ ++ R R +
Sbjct: 557 EYEMLFEKFGGFDALYLKMLACGIPTSVHLMWIPMSELSLQQQFLLVTRVVSRVFNALRK 616
Query: 514 SETVLTTTNLIFDNIKEMTDDIMTVIGFPIVEYILPNPVRVKLGMAWPEE--ETMNTPWY 571
++ V + + + I+ + DDIM + FP++E+I+P +R++LGMAWPEE +T+ + WY
Sbjct: 617 TQVVSNAKDTVLEKIRNINDDIMMAVVFPVIEFIIPYQLRLRLGMAWPEEIEQTVGSTWY 676
Query: 572 LNWQLNAEARVQSRRADGDFRWIMLFIARAAISGFVLINVFQFMRRKIPRLLGYGPIQKN 631
L WQ AE +SR + DF+W + F+ R++I GFVL +VF+F++RK+PRLLGYGP +++
Sbjct: 677 LQWQSEAEMNFKSRNTE-DFQWFLWFLIRSSIYGFVLYHVFRFLKRKVPRLLGYGPFRRD 735
Query: 632 PNRRKLEQMAYYFDERKGRMRDRRREGVDPIKTAFEHMKRVKKPPIPLNNFSSIDSMKEE 691
PN RK ++ YF RK R++ +R+ G+DPIKTAF+ MKRVK PPIPL NF+SI+SM+EE
Sbjct: 736 PNVRKFWRVKSYFTYRKRRIKQKRKAGIDPIKTAFDRMKRVKNPPIPLKNFASIESMREE 795
Query: 692 ISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEA 751
I+EVVAFLQNP+AFQEMGARAPRGVLIVGERGTGKTSLA+AIAAEA+VPVV ++AQ+LEA
Sbjct: 796 INEVVAFLQNPKAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 855
Query: 752 GMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVEL 811
G+WVGQSA+NVRELFQTARDLAPVI+FVEDFDLFAGVRGKF+HT+ QDHE+FINQLLVEL
Sbjct: 856 GLWVGQSAANVRELFQTARDLAPVIIFVEDFDLFAGVRGKFVHTKQQDHESFINQLLVEL 915
Query: 812 DGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAERENILYSAAKETMDDQ 871
DGFEKQDGVVLMATTRN KQIDEAL+RPGRMDR+FHLQ PT+ ERE IL++AA+ETMD +
Sbjct: 916 DGFEKQDGVVLMATTRNHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRE 975
Query: 872 LVEYVDWKKVAEKTALLRPIELKLVPIALEGSAFRSKVLDTDEIMSYCSFFA 923
LV+ VDW+KV+EKT LLRPIELKLVP+ALE SAFRSK LDTDE++SY S+FA
Sbjct: 976 LVDLVDWRKVSEKTTLLRPIELKLVPMALESSAFRSKFLDTDELLSYVSWFA 1027
>ref|NP_187084.3| FtsH protease family protein [Arabidopsis thaliana]
Length = 960
Score = 775 bits (2001), Expect = 0.0
Identities = 390/661 (59%), Positives = 508/661 (76%), Gaps = 15/661 (2%)
Query: 270 FIQRECENLVERFKQEIKQ-KKIGSSFASSVNKLSKSVIQEDLETVQRKQIEQTILPSIV 328
F R+ + R K+ +++ KK+ + + K K +E L +K E +
Sbjct: 15 FFDRDSVDFSLRIKKRLEESKKLQRDLQNRIRKRMKKFGEEKLFV--QKTPEGEAVKGFP 72
Query: 329 DVDDLGPFFHQDSV---DFAQHLERSLKDSREQQK-NLEAQIRKDMQYDKEKRSVVYSPE 384
+ + F ++ V HL K +E+ K +L+ ++ +D+ + K+ Y +
Sbjct: 73 EAEVKWMFGEKEVVVPKAIQLHLRHGWKKWQEEAKADLKQKLLEDVDFGKQ-----YIAQ 127
Query: 385 EEERILLDRDRVVSKTWYNEEKNRWEMDPVAVPHAVSKKLIEHVRIRYDGRAMYIALKGE 444
+E++LLDRDRVVSKTWYNE+K+RWEMDP+AVP+AVS+KLI+ RIR+D MY+ALKG+
Sbjct: 128 RQEQVLLDRDRVVSKTWYNEDKSRWEMDPMAVPYAVSRKLIDSARIRHDYAVMYVALKGD 187
Query: 445 DKEFYVDIKEFERLFEYIGGFDVLYRKMLACGIPTAVHLMWIPLSELSVHQRISVILRFP 504
DKEFYVDIKE+E LFE GGFD LY KMLACGIPT+VHLMWIP+SELS+ Q+ ++ R
Sbjct: 188 DKEFYVDIKEYEMLFEKFGGFDALYLKMLACGIPTSVHLMWIPMSELSLQQQFLLVTRVV 247
Query: 505 LRFLSGRWNSETVLTTTNLIFDNIKEMTDDIMTVIGFPIVEYILPNPVRVKLGMAWPEE- 563
R + ++ V + + + I+ + DDIM + FP++E+I+P +R++LGMAWPEE
Sbjct: 248 SRVFNALRKTQVVSNAKDTVLEKIRNINDDIMMAVVFPVIEFIIPYQLRLRLGMAWPEEI 307
Query: 564 -ETMNTPWYLNWQLNAEARVQSRRADGDFRWIMLFIARAAISGFVLINVFQFMRRKIPRL 622
+T+ + WYL WQ AE +SR + DF+W + F+ R++I GFVL +VF+F++RK+PRL
Sbjct: 308 EQTVGSTWYLQWQSEAEMNFKSRNTE-DFQWFLWFLIRSSIYGFVLYHVFRFLKRKVPRL 366
Query: 623 LGYGPIQKNPNRRKLEQMAYYFDERKGRMRDRRREGVDPIKTAFEHMKRVKKPPIPLNNF 682
LGYGP +++PN RK ++ YF RK R++ +R+ G+DPIKTAF+ MKRVK PPIPL NF
Sbjct: 367 LGYGPFRRDPNVRKFWRVKSYFTYRKRRIKQKRKAGIDPIKTAFDRMKRVKNPPIPLKNF 426
Query: 683 SSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAIAAEAKVPVV 742
+SI+SM+EEI+EVVAFLQNP+AFQEMGARAPRGVLIVGERGTGKTSLA+AIAAEA+VPVV
Sbjct: 427 ASIESMREEINEVVAFLQNPKAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVV 486
Query: 743 EIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEA 802
++AQ+LEAG+WVGQSA+NVRELFQTARDLAPVI+FVEDFDLFAGVRGKF+HT+ QDHE+
Sbjct: 487 NVEAQELEAGLWVGQSAANVRELFQTARDLAPVIIFVEDFDLFAGVRGKFVHTKQQDHES 546
Query: 803 FINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAERENILYS 862
FINQLLVELDGFEKQDGVVLMATTRN KQIDEAL+RPGRMDR+FHLQ PT+ ERE IL++
Sbjct: 547 FINQLLVELDGFEKQDGVVLMATTRNHKQIDEALRRPGRMDRVFHLQSPTEMERERILHN 606
Query: 863 AAKETMDDQLVEYVDWKKVAEKTALLRPIELKLVPIALEGSAFRSKVLDTDEIMSYCSFF 922
AA+ETMD +LV+ VDW+KV+EKT LLRPIELKLVP+ALE SAFRSK LDTDE++SY S+F
Sbjct: 607 AAEETMDRELVDLVDWRKVSEKTTLLRPIELKLVPMALESSAFRSKFLDTDELLSYVSWF 666
Query: 923 A 923
A
Sbjct: 667 A 667
>ref|YP_005097.1| cell division protein ftsH [Thermus thermophilus HB27]
gi|55981461|ref|YP_144758.1| cell division protein FtsH
[Thermus thermophilus HB8] gi|46197056|gb|AAS81470.1|
cell division protein ftsH [Thermus thermophilus HB27]
gi|55772874|dbj|BAD71315.1| cell division protein FtsH
[Thermus thermophilus HB8]
Length = 624
Score = 162 bits (409), Expect = 8e-38
Identities = 98/250 (39%), Positives = 134/250 (53%), Gaps = 17/250 (6%)
Query: 641 AYYFDERKGRMRDRRREGVDPIKTAFEHMKR-----VKKPPIPLNNFSSIDSMKEEISEV 695
A Y+ R GR P +AF K + P + + + + KEE+ E+
Sbjct: 120 ALYYFSRNGR--------AGPSDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEI 171
Query: 696 VAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWV 755
V FL+NP F EMGAR P+GVL+VG G GKT LA A+A EA+VP + M+V
Sbjct: 172 VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF-VEMFV 230
Query: 756 GQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDGFE 815
G A+ VR+LF+TA+ AP I+F+++ D RG + N + E +NQLLVE+DGFE
Sbjct: 231 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 290
Query: 816 KQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAERENILYSAAKETMDDQLVEY 875
K +V+MA T +D AL RPGR DR + P RE IL A+ L E
Sbjct: 291 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR---GKPLAED 347
Query: 876 VDWKKVAEKT 885
VD +A++T
Sbjct: 348 VDLALLAKRT 357
>dbj|BAA96090.1| FtsH [Thermus thermophilus]
Length = 624
Score = 162 bits (409), Expect = 8e-38
Identities = 98/250 (39%), Positives = 134/250 (53%), Gaps = 17/250 (6%)
Query: 641 AYYFDERKGRMRDRRREGVDPIKTAFEHMKR-----VKKPPIPLNNFSSIDSMKEEISEV 695
A Y+ R GR P +AF K + P + + + + KEE+ E+
Sbjct: 120 ALYYFSRNGR--------AGPSDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEI 171
Query: 696 VAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWV 755
V FL+NP F EMGAR P+GVL+VG G GKT LA A+A EA+VP + M+V
Sbjct: 172 VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF-VEMFV 230
Query: 756 GQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDGFE 815
G A+ VR+LF+TA+ AP I+F+++ D RG + N + E +NQLLVE+DGFE
Sbjct: 231 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 290
Query: 816 KQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAERENILYSAAKETMDDQLVEY 875
K +V+MA T +D AL RPGR DR + P RE IL A+ L E
Sbjct: 291 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR---GKPLAED 347
Query: 876 VDWKKVAEKT 885
VD +A++T
Sbjct: 348 VDLALLAKRT 357
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 159 bits (403), Expect = 4e-37
Identities = 93/230 (40%), Positives = 128/230 (55%), Gaps = 9/230 (3%)
Query: 661 PIKTAFEHMKR-----VKKPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRG 715
P +AF K + P + + + + KEE+ E+V FL+NP F EMGAR P+G
Sbjct: 16 PSDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG 75
Query: 716 VLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPV 775
VL+VG G GKT LA A+A EA+VP + M+VG A+ VR+LF+TA+ AP
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDF-VEMFVGVGAARVRDLFETAKRHAPC 134
Query: 776 ILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEA 835
I+F+++ D RG + N + E +NQLLVE+DGFEK +V+MA T +D A
Sbjct: 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194
Query: 836 LQRPGRMDRIFHLQRPTQAERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
L RPGR DR + P RE IL A+ L E VD +A++T
Sbjct: 195 LLRPGRFDRQIAIDAPDVKGREQILRIHAR---GKPLAEDVDLALLAKRT 241
>ref|YP_145915.1| cell-division protein and general stress protein (class III
heat-shock) [Geobacillus kaustophilus HTA426]
gi|56378439|dbj|BAD74347.1| cell-division protein and
general stress protein (class III heat-shock)
[Geobacillus kaustophilus HTA426]
Length = 632
Score = 159 bits (402), Expect = 5e-37
Identities = 117/340 (34%), Positives = 166/340 (48%), Gaps = 41/340 (12%)
Query: 578 AEARVQSRRADGDFRWIMLFIARAAISGFVLINVFQFMRRKIPRLLGYGPIQKNPNRRKL 637
A RV+ AD W+ F +I FV+I + F + G + +R +L
Sbjct: 95 ARTRVEVVPADETSGWVTFF---TSIIPFVIIFILFFFLLNQAQGGGSRVMNFGKSRARL 151
Query: 638 EQMAYYFDERKGRMRDRRREGVDPIKTAFEHMKRVKKPPIPLNNFSSIDSMKEEISEVVA 697
Y D+RK R RD + D KEE+ E+V
Sbjct: 152 ----YTDDKRKVRFRD----------------------------VAGADEEKEELVEIVE 179
Query: 698 FLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQ 757
FL++PR F E+GAR P+GVL+VG GTGKT LA A+A EA VP I M+VG
Sbjct: 180 FLKDPRKFAELGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDF-VEMFVGV 238
Query: 758 SASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDGFEKQ 817
AS VR+LF+TA+ AP I+F+++ D RG + + + E +NQLLVE+DGF
Sbjct: 239 GASRVRDLFETAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNGN 298
Query: 818 DGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAERENILYSAAKETMDDQLVEYVD 877
+G++++A T +D AL RPGR DR + RP RE +L A+ + L E VD
Sbjct: 299 EGIIIIAATNRPDILDPALLRPGRFDRQITVDRPDVKGREAVLRVHAR---NKPLDESVD 355
Query: 878 WKKVAEKTALLRPIELK--LVPIALEGSAFRSKVLDTDEI 915
K +A +T +L+ L AL + K +D +I
Sbjct: 356 LKTIAMRTPGFSGADLENLLNEAALVAARRNKKKIDMSDI 395
>pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus gi|24987365|pdb|1IY0|A Chain A,
Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus gi|24987364|pdb|1IXZ|A Chain
A, Crystal Structure Of The Ftsh Atpase Domain From
Thermus Thermophilus
Length = 254
Score = 159 bits (402), Expect = 5e-37
Identities = 89/211 (42%), Positives = 122/211 (57%), Gaps = 4/211 (1%)
Query: 675 PPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAIA 734
P + + + + KEE+ E+V FL+NP F EMGAR P+GVL+VG G GKT LA A+A
Sbjct: 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 70
Query: 735 AEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIH 794
EA+VP + M+VG A+ VR+LF+TA+ AP I+F+++ D RG +
Sbjct: 71 GEARVPFITASGSDF-VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 129
Query: 795 TENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQA 854
N + E +NQLLVE+DGFEK +V+MA T +D AL RPGR DR + P
Sbjct: 130 GGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189
Query: 855 ERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
RE IL A+ L E VD +A++T
Sbjct: 190 GREQILRIHAR---GKPLAEDVDLALLAKRT 217
>ref|ZP_00423071.1| Peptidase M41, FtsH [Burkholderia vietnamiensis G4]
gi|67533595|gb|EAM30354.1| Peptidase M41, FtsH
[Burkholderia vietnamiensis G4]
Length = 635
Score = 157 bits (397), Expect = 2e-36
Identities = 91/243 (37%), Positives = 135/243 (55%), Gaps = 9/243 (3%)
Query: 643 YFDERKGRMRDRRREGVDPIKTAFEHMKRVKKPPIPLNNFSSIDSMKEEISEVVAFLQNP 702
+ R G MRD G + + K+ I ++ + ID K E+ ++VAFL++P
Sbjct: 137 FMTRRPGGMRDLSGMGKSRARVYMQ-----KETGITFDDIAGIDEAKAELQQIVAFLRDP 191
Query: 703 RAFQEMGARAPRGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNV 762
+Q +G + P+GVLIVG GTGKT LA A+A EA VP I M+VG A+ V
Sbjct: 192 DRYQRLGGKIPKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAF-VEMFVGVGAARV 250
Query: 763 RELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDGFEKQDGVVL 822
R+LF+ A+ AP I+F+++ D RG + + N + E +NQLLVE+DGF+ GV++
Sbjct: 251 RDLFEQAQQTAPCIVFIDELDALGKARGVGLMSGNDEREQTLNQLLVEMDGFQANSGVII 310
Query: 823 MATTRNLKQIDEALQRPGRMDRIFHLQRPTQAERENILYSAAKETMDDQLVEYVDWKKVA 882
MA T + +D AL RPGR DR + RP R+ IL K ++ VD ++A
Sbjct: 311 MAATNRPEILDPALLRPGRFDRHIAIDRPDLNGRKQILTVHTKRV---KVAPGVDLAELA 367
Query: 883 EKT 885
++T
Sbjct: 368 QRT 370
>ref|ZP_00008180.1| COG0465: ATP-dependent Zn proteases [Rhodobacter sphaeroides 2.4.1]
Length = 633
Score = 157 bits (397), Expect = 2e-36
Identities = 88/213 (41%), Positives = 123/213 (57%), Gaps = 4/213 (1%)
Query: 673 KKPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMA 732
K+ + ++ + ID KEE+ E+V FL+NP+ F +G + P+G L+VG GTGKT LA A
Sbjct: 147 KQGRVTFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARA 206
Query: 733 IAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKF 792
IA EA VP I M+VG AS VR++F+ A+ AP I+F+++ D RG
Sbjct: 207 IAGEAGVPFFTISGSDF-VEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRARGVG 265
Query: 793 IHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPT 852
I N + E +NQLLVE+DGFE +GV+++A T +D AL RPGR DR H+ P
Sbjct: 266 IGGGNDEREQTLNQLLVEMDGFEANEGVIIVAATNRKDVLDPALLRPGRFDRTIHVPNPD 325
Query: 853 QAERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
RE IL A++ L VD + +A T
Sbjct: 326 IKGREKILSVHARKV---PLGPNVDLRLIARGT 355
>gb|EAK88317.1| predicted AFG1 ATpase family AAA ATpase [Cryptosporidium parvum]
gi|66362372|ref|XP_628150.1| predicted AFG1 ATpase
family AAA ATpase [Cryptosporidium parvum]
Length = 719
Score = 157 bits (397), Expect = 2e-36
Identities = 87/222 (39%), Positives = 134/222 (60%), Gaps = 11/222 (4%)
Query: 664 TAFEHMKRVKKPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERG 723
++F +K + K I ++ + + K+EI E+V FL++P+ FQ++GA+ P+G L+VG G
Sbjct: 244 SSFSQVKNMNKN-IKFSDIAGMKEAKQEIYELVEFLKDPKRFQDLGAKIPKGALLVGPPG 302
Query: 724 TGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFD 783
TGKT LA A+A EA VP I ++VG AS VRELF AR L+P I+F+++ D
Sbjct: 303 TGKTLLAKAVAGEANVPFFYISGSDF-IEIFVGMGASRVRELFSQARKLSPSIVFIDEID 361
Query: 784 LFAGVRGK---FIHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPG 840
R K F + N + E+ +NQ+LVE+DGF + +GV+++A T +D AL RPG
Sbjct: 362 AVGRKRAKGGGFAASSNDERESTLNQILVEMDGFTENNGVIVLAGTNRSDVLDPALTRPG 421
Query: 841 RMDRIFHLQRPTQAERENILYSAAK------ETMDDQLVEYV 876
R DRI +++RP ER+ I K + D+L++Y+
Sbjct: 422 RFDRIINIERPNLEERKEIFKIHLKPLKLNEKLNKDELIKYL 463
>ref|NP_463751.1| hypothetical protein lmo0220 [Listeria monocytogenes EGD-e]
gi|16409585|emb|CAD00747.1| ftsH [Listeria
monocytogenes] gi|25308065|pir||AE1102 cell division
protein ftsH homolog ftsH [imported] - Listeria
monocytogenes (strain EGD-e)
Length = 691
Score = 155 bits (393), Expect = 6e-36
Identities = 87/212 (41%), Positives = 125/212 (58%), Gaps = 4/212 (1%)
Query: 674 KPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAI 733
K + + + D K+E+ EVV FL++PR F E+GAR P+GVL+VG GTGKT LA A+
Sbjct: 174 KKKVRFTDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLARAV 233
Query: 734 AAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFI 793
A EA VP I M+VG AS VR+LF+ A+ AP I+F+++ D RG +
Sbjct: 234 AGEAGVPFFSISGSDF-VEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGM 292
Query: 794 HTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQ 853
+ + E +NQLLVE+DGF +G++++A T +D AL RPGR DR + RP
Sbjct: 293 GGGHDEREQTLNQLLVEMDGFGGNEGIIIIAATNRADVLDPALLRPGRFDRQIMVDRPDV 352
Query: 854 AERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
RE +L A+ + L + VD K +A++T
Sbjct: 353 KGREAVLRVHAR---NKPLAKSVDLKAIAQRT 381
>ref|ZP_00234819.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str.
1/2a F6854] gi|47014359|gb|EAL05332.1| ATP-dependent
metalloprotease FtsH [Listeria monocytogenes str. 1/2a
F6854]
Length = 691
Score = 155 bits (393), Expect = 6e-36
Identities = 87/212 (41%), Positives = 125/212 (58%), Gaps = 4/212 (1%)
Query: 674 KPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAI 733
K + + + D K+E+ EVV FL++PR F E+GAR P+GVL+VG GTGKT LA A+
Sbjct: 174 KKKVRFTDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLARAV 233
Query: 734 AAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFI 793
A EA VP I M+VG AS VR+LF+ A+ AP I+F+++ D RG +
Sbjct: 234 AGEAGVPFFSISGSDF-VEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGM 292
Query: 794 HTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQ 853
+ + E +NQLLVE+DGF +G++++A T +D AL RPGR DR + RP
Sbjct: 293 GGGHDEREQTLNQLLVEMDGFGGNEGIIIIAATNRADVLDPALLRPGRFDRQIMVDRPDV 352
Query: 854 AERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
RE +L A+ + L + VD K +A++T
Sbjct: 353 KGREAVLRVHAR---NKPLAKSVDLKAIAQRT 381
>emb|CAI72971.1| metalloprotease/cell division cycle protein (FtsH homologue),
putative [Theileria annulata]
Length = 805
Score = 155 bits (392), Expect = 8e-36
Identities = 79/212 (37%), Positives = 122/212 (57%), Gaps = 7/212 (3%)
Query: 661 PIKTAFEHMKRVKKP-----PIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRG 715
P KT + KP P+ + ID KE++ E+V F++ P ++++GA+ P+G
Sbjct: 207 PPKTQIKQQDPPPKPEVTFEPVHFKDILGIDEAKEDVQEIVKFIKQPFLYKKVGAKVPKG 266
Query: 716 VLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPV 775
+L+VG GTGKT LA A+A E +P + + ++VGQ A +R LFQ AR +AP
Sbjct: 267 ILLVGPPGTGKTMLAKAVATETGIPFIYTSGPEF-VEIYVGQGAQRIRALFQKARKIAPC 325
Query: 776 ILFVEDFDLFAGVRGK-FIHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDE 834
I+F+++ D R + +N++H+ +NQLLVE+DGF G+ ++A T L +D
Sbjct: 326 IIFIDEIDAVGSKRATGSLSGQNREHDQTLNQLLVEMDGFNVSTGITILAATNRLSALDR 385
Query: 835 ALQRPGRMDRIFHLQRPTQAERENILYSAAKE 866
AL RPGR DR+ H+ P+ RE IL K+
Sbjct: 386 ALLRPGRFDRVVHIPLPSIQGREEILQHYLKD 417
>ref|NP_975050.1| ATP-dependent zinc metallopeptidase FtsH [Mycoplasma mycoides
subsp. mycoides SC str. PG1] gi|42492095|emb|CAE76692.1|
ATP-dependent zinc metallopeptidase FtsH [Mycoplasma
mycoides subsp. mycoides SC]
Length = 648
Score = 155 bits (391), Expect = 1e-35
Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 6/219 (2%)
Query: 667 EHMKRVKKPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGK 726
++ R +K + ++ + I+ K E+ E+V +L+ P + GARAP+GVL+ G GTGK
Sbjct: 157 QNKARREKSNVKFSDVAGIEEEKLELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGK 216
Query: 727 TSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFA 786
T LA A+A EA V I + E M+VG AS VRE+F A+ AP I+F+++ D
Sbjct: 217 TLLAKAVAGEANVSFFSIAGSEFEE-MFVGVGASRVREMFNEAKKAAPAIIFIDEIDAVG 275
Query: 787 GVRGKFIHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIF 846
R I T +E +NQLLVELDGFE G+++MA T + +D AL RPGR DR+
Sbjct: 276 RKRNSAIGTGT--NEQTLNQLLVELDGFETNSGIIVMAATNRVDVLDPALLRPGRFDRVI 333
Query: 847 HLQRPTQAERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
+ P ERE IL A+ D +DW ++AE+T
Sbjct: 334 QVSLPDIKEREQILKLHARNKKID---PSIDWHRIAERT 369
>emb|CAB61952.1| FtsH metalloprotease-like protein [Arabidopsis thaliana]
gi|23198320|gb|AAN15687.1| FtsH metalloprotease-like
protein [Arabidopsis thaliana]
gi|20466542|gb|AAM20588.1| FtsH metalloprotease-like
protein [Arabidopsis thaliana]
gi|18408352|ref|NP_566889.1| FtsH protease, putative
[Arabidopsis thaliana] gi|11357297|pir||T45642 FtsH
metalloproteinase-like protein - Arabidopsis thaliana
Length = 802
Score = 155 bits (391), Expect = 1e-35
Identities = 86/213 (40%), Positives = 125/213 (58%), Gaps = 8/213 (3%)
Query: 649 GRMRDRRREGVDPIKTAFEHMKRVKKPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEM 708
G++R R+ G D K + I + + +D KEE+ E+V FL+NP + +
Sbjct: 300 GQLRTRKAGGPDGGKVSGGG------ETITFADVAGVDEAKEELEEIVEFLRNPEKYVRL 353
Query: 709 GARAPRGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQT 768
GAR PRGVL+VG GTGKT LA A+A EA+VP + A + ++VG AS VR+LF
Sbjct: 354 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF-VELYVGMGASRVRDLFAR 412
Query: 769 ARDLAPVILFVEDFDLFAGVR-GKFIHTENQDHEAFINQLLVELDGFEKQDGVVLMATTR 827
A+ AP I+F+++ D A R GKF N + E +NQLL E+DGF+ V+++ T
Sbjct: 413 AKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 472
Query: 828 NLKQIDEALQRPGRMDRIFHLQRPTQAERENIL 860
+D AL+RPGR DR+ ++ P + RE+IL
Sbjct: 473 RADVLDPALRRPGRFDRVVTVETPDKIGRESIL 505
>ref|NP_387950.1| cell-division protein and general stress protein (class III
heat-shock) [Bacillus subtilis subsp. subtilis str. 168]
gi|2632336|emb|CAB11845.1| cell-division protein and
general stress protein (class III heat-shock) [Bacillus
subtilis subsp. subtilis str. 168]
gi|585159|sp|P37476|FTSH_BACSU Cell division protein
ftsH homolog gi|467458|dbj|BAA05304.1| cell division
protein [Bacillus subtilis]
Length = 637
Score = 154 bits (390), Expect = 1e-35
Identities = 99/260 (38%), Positives = 140/260 (53%), Gaps = 11/260 (4%)
Query: 658 GVDPIKTAFEHMKRVKKPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVL 717
G K E KRVK + + D K+E+ EVV FL++PR F E+GAR P+GVL
Sbjct: 144 GKSKAKLYTEEKKRVK-----FKDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVL 198
Query: 718 IVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVIL 777
+VG GTGKT LA A A EA VP I M+VG AS VR+LF+ A+ AP ++
Sbjct: 199 LVGPPGTGKTLLAKACAGEAGVPFFSISGSDF-VEMFVGVGASRVRDLFENAKKNAPCLI 257
Query: 778 FVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQ 837
F+++ D RG + + + E +NQLLVE+DGF +G++++A T +D AL
Sbjct: 258 FIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALL 317
Query: 838 RPGRMDRIFHLQRPTQAERENILYSAAKETMDDQLVEYVDWKKVAEKTALLRPIELK--L 895
RPGR DR + RP RE +L A+ + L E V+ K +A +T +L+ L
Sbjct: 318 RPGRFDRQITVDRPDVIGREAVLKVHAR---NKPLDETVNLKSIAMRTPGFSGADLENLL 374
Query: 896 VPIALEGSAFRSKVLDTDEI 915
AL + K +D +I
Sbjct: 375 NEAALVAARQNKKKIDARDI 394
>ref|NP_469597.1| ftsH [Listeria innocua Clip11262] gi|16412681|emb|CAC95485.1| ftsH
[Listeria innocua] gi|25308066|pir||AE1464 cell division
protein ftsH homolog ftsH [imported] - Listeria innocua
(strain Clip11262)
Length = 690
Score = 154 bits (390), Expect = 1e-35
Identities = 86/212 (40%), Positives = 125/212 (58%), Gaps = 4/212 (1%)
Query: 674 KPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAI 733
K + + + D K+E+ EVV FL++PR F ++GAR P+GVL+VG GTGKT LA A+
Sbjct: 174 KKKVRFTDVAGADEEKQELVEVVEFLKDPRKFADLGARIPKGVLLVGPPGTGKTLLARAV 233
Query: 734 AAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFI 793
A EA VP I M+VG AS VR+LF+ A+ AP I+F+++ D RG +
Sbjct: 234 AGEAGVPFFSISGSDF-VEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGM 292
Query: 794 HTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQ 853
+ + E +NQLLVE+DGF +G++++A T +D AL RPGR DR + RP
Sbjct: 293 GGGHDEREQTLNQLLVEMDGFGGNEGIIIIAATNRADVLDPALLRPGRFDRQIMVDRPDV 352
Query: 854 AERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
RE +L A+ + L + VD K +A++T
Sbjct: 353 KGREAVLRVHAR---NKPLAKSVDLKAIAQRT 381
>ref|NP_814059.1| cell division protein FtsH [Enterococcus faecalis V583]
gi|29342364|gb|AAO80130.1| cell division protein FtsH
[Enterococcus faecalis V583]
Length = 718
Score = 154 bits (390), Expect = 1e-35
Identities = 95/241 (39%), Positives = 137/241 (56%), Gaps = 6/241 (2%)
Query: 677 IPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAIAAE 736
+ ++ + + K+E+ EVV FL++PR F E+GAR P GVL+ G GTGKT LA A+A E
Sbjct: 184 VRFSDVAGAEEEKQELVEVVEFLKDPRRFAELGARIPAGVLLEGPPGTGKTLLAKAVAGE 243
Query: 737 AKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTE 796
A VP I M+VG AS VR+LF+TA+ AP I+F+++ D RG +
Sbjct: 244 AGVPFYSISGSDF-VEMFVGVGASRVRDLFETAKKNAPAIIFIDEIDAVGRQRGAGMGGG 302
Query: 797 NQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAER 856
+ + E +NQLLVE+DGF+ +GV+++A T +D AL RPGR DR + RP R
Sbjct: 303 HDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLDPALLRPGRFDRQILVGRPDVKGR 362
Query: 857 ENILYSAAKETMDDQLVEYVDWKKVAEKTALLRPIELK--LVPIALEGSAFRSKVLDTDE 914
E IL AK + L + VD K VA++T +L+ L AL + K +D +
Sbjct: 363 EAILRVHAK---NKPLADDVDLKVVAQQTPGFAGADLENVLNEAALVAARRNKKKIDASD 419
Query: 915 I 915
+
Sbjct: 420 V 420
>ref|YP_012841.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b
F2365] gi|47093162|ref|ZP_00230937.1| ATP-dependent
metalloprotease FtsH [Listeria monocytogenes str. 4b
H7858] gi|47018469|gb|EAL09227.1| ATP-dependent
metalloprotease FtsH [Listeria monocytogenes str. 4b
H7858] gi|46879716|gb|AAT03018.1| ATP-dependent
metalloprotease FtsH [Listeria monocytogenes str. 4b
F2365]
Length = 691
Score = 154 bits (390), Expect = 1e-35
Identities = 86/212 (40%), Positives = 125/212 (58%), Gaps = 4/212 (1%)
Query: 674 KPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAI 733
K + + + D K+E+ EVV FL++PR F ++GAR P+GVL+VG GTGKT LA A+
Sbjct: 174 KKKVRFTDVAGADEEKQELVEVVEFLKDPRKFADLGARIPKGVLLVGPPGTGKTLLARAV 233
Query: 734 AAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFI 793
A EA VP I M+VG AS VR+LF+ A+ AP I+F+++ D RG +
Sbjct: 234 AGEAGVPFFSISGSDF-VEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGM 292
Query: 794 HTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQ 853
+ + E +NQLLVE+DGF +G++++A T +D AL RPGR DR + RP
Sbjct: 293 GGGHDEREQTLNQLLVEMDGFGGNEGIIIIAATNRADVLDPALLRPGRFDRQIMVDRPDV 352
Query: 854 AERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
RE +L A+ + L + VD K +A++T
Sbjct: 353 KGREAVLRVHAR---NKPLAKSVDLKAIAQRT 381
>gb|AAM74002.1| FtsH [Listeria monocytogenes]
Length = 687
Score = 154 bits (390), Expect = 1e-35
Identities = 86/212 (40%), Positives = 125/212 (58%), Gaps = 4/212 (1%)
Query: 674 KPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAI 733
K + + + D K+E+ EVV FL++PR F ++GAR P+GVL+VG GTGKT LA A+
Sbjct: 174 KKKVRFTDVAGADEEKQELVEVVEFLKDPRKFADLGARIPKGVLLVGPPGTGKTLLARAV 233
Query: 734 AAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFI 793
A EA VP I M+VG AS VR+LF+ A+ AP I+F+++ D RG +
Sbjct: 234 AGEAGVPFFSISGSDF-VEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGM 292
Query: 794 HTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQ 853
+ + E +NQLLVE+DGF +G++++A T +D AL RPGR DR + RP
Sbjct: 293 GGGHDEREQTLNQLLVEMDGFGGNEGIIIIAATNRADVLDPALLRPGRFDRQIMVDRPDV 352
Query: 854 AERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
RE +L A+ + L + VD K +A++T
Sbjct: 353 KGREAVLRVHAR---NKPLAKSVDLKAIAQRT 381
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.332 0.143 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,875,476,337
Number of Sequences: 2540612
Number of extensions: 78140724
Number of successful extensions: 328425
Number of sequences better than 10.0: 4662
Number of HSP's better than 10.0 without gapping: 1997
Number of HSP's successfully gapped in prelim test: 2734
Number of HSP's that attempted gapping in prelim test: 316220
Number of HSP's gapped (non-prelim): 10134
length of query: 1184
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1045
effective length of database: 510,215,326
effective search space: 533175015670
effective search space used: 533175015670
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 81 (35.8 bits)
Medicago: description of AC135461.15