BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135416.5 + phase: 0 /pseudo
(653 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana] 119 3e-25
gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana] gi... 116 2e-24
gb|AAF24531.1| F7F22.17 [Arabidopsis thaliana] 116 2e-24
emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|A... 116 3e-24
gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana] 116 3e-24
gb|AAM15150.1| putative Athila retroelement ORF1 protein [Arabid... 115 4e-24
gb|AAF24529.1| F7F22.15 [Arabidopsis thaliana] 115 6e-24
emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana] g... 114 8e-24
emb|CAB81134.1| putative athila transposon protein [Arabidopsis ... 114 1e-23
gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana] 114 1e-23
gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabid... 114 1e-23
gb|AAD20430.1| putative Athila retroelement ORF1 protein [Arabid... 114 1e-23
gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 ... 114 1e-23
emb|CAB77937.1| putative athila transposon protein [Arabidopsis ... 113 2e-23
gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabid... 113 2e-23
gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana] 113 2e-23
gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabid... 105 4e-21
gb|AAF67372.1| Hypothetical protein T15F17.d [Arabidopsis thaliana] 103 2e-20
ref|XP_475041.1| OSJNBa0042F21.11 [Oryza sativa (japonica cultiv... 102 3e-20
ref|XP_474896.1| OSJNBa0021F22.23 [Oryza sativa (japonica cultiv... 102 5e-20
>gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
Length = 780
Score = 119 bits (298), Expect = 3e-25
Identities = 58/121 (47%), Positives = 78/121 (63%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ +F R K N +++ +L LFPFSL D A W +L V S+
Sbjct: 52 NKFHGLPMEDPLDHLDNFDRFCSLTKINGVSEDSFKLRLFPFSLGDEAHLWEKTLLVDSV 111
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
+WDD ++A LA+FF S+TA+LR++I FNQK+ ES EAWERFK CPHHG +K
Sbjct: 112 DTWDDCKKAFLAKFFSNSRTARLRNEISGFNQKNSESFAEAWERFKRYSTQCPHHGFKKA 171
Query: 119 A 119
+
Sbjct: 172 S 172
>gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
gi|25354973|pir||A96501 hypothetical protein F2J6.11
[imported] - Arabidopsis thaliana
Length = 823
Score = 116 bits (291), Expect = 2e-24
Identities = 58/121 (47%), Positives = 79/121 (64%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ +F RL K N +++ +L LFPFSL D+A W +L V S+
Sbjct: 88 NKFHGLPMEDPLDHLDNFDRLCSLTKINGVSEDSFKLRLFPFSLGDKAHLWEKTLPVDSV 147
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
+ DD ++A LA+FF S+TA+LR++I FNQK+ ES EAWERFK CPHHG +K
Sbjct: 148 DTLDDCKKAFLAKFFSNSRTARLRNEISGFNQKNSESFAEAWERFKGYSTQCPHHGFKKA 207
Query: 119 A 119
+
Sbjct: 208 S 208
>gb|AAF24531.1| F7F22.17 [Arabidopsis thaliana]
Length = 1799
Score = 116 bits (291), Expect = 2e-24
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ F RL K N ++ +L LFPFSL D+A W +L SI
Sbjct: 35 NKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLPHDSI 94
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
T+WDD ++ L++FF ++TA+LR++I F+QK GES EAWERFK CPHHG K
Sbjct: 95 TTWDDCKKVFLSKFFSNARTARLRNEISGFSQKTGESFCEAWERFKGYTNQCPHHGFTKA 154
Query: 119 A 119
+
Sbjct: 155 S 155
>emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|AAD48078.1| contains
similarity to retrotransposons; may be a pseudogene
[Arabidopsis thaliana] gi|25354718|pir||C85079
hypothetical protein AT4g08050 [imported] - Arabidopsis
thaliana
Length = 1428
Score = 116 bits (290), Expect = 3e-24
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ F RL K N ++ +L LFPFSL D+A W +L SI
Sbjct: 52 NKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLSHDSI 111
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
T+WDD ++A L++FF ++TA+LR++I F+QK GES EAWERFK CPHH K
Sbjct: 112 TTWDDYKKAFLSKFFSNARTARLRNEIYGFSQKTGESFCEAWERFKGYTNQCPHHSFTKA 171
Query: 119 A 119
+
Sbjct: 172 S 172
>gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana]
Length = 1586
Score = 116 bits (290), Expect = 3e-24
Identities = 58/115 (50%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ F RL K N ++ +L LFPFSL D+A W SL GSI
Sbjct: 84 NKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSI 143
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHH 113
TSW+D ++A LA+FF S+TA+LR+ I F Q + E+ YEAWERFK CPHH
Sbjct: 144 TSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNETFYEAWERFKGYQTQCPHH 198
>gb|AAM15150.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354977|pir||A84486 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 1012
Score = 115 bits (288), Expect = 4e-24
Identities = 58/115 (50%), Positives = 74/115 (63%), Gaps = 3/115 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ +F RL K N +E+ +L LFPFSL D+A W +L V SI
Sbjct: 47 NKFHGLPMEDPLDHLDNFDRLCSLTKINGVSEESFKLRLFPFSLGDKAHLWEKTLPVKSI 106
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHH 113
+WDD ++A LA+FF S+ A+LR +I FNQK+ ES EAWERFK CPHH
Sbjct: 107 DTWDDCKKAFLAKFFSNSRKARLRSEISGFNQKNSESFSEAWERFKGYTTQCPHH 161
>gb|AAF24529.1| F7F22.15 [Arabidopsis thaliana]
Length = 1862
Score = 115 bits (287), Expect = 6e-24
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ F RL K N ++ +L LFPFSL D+A W +L SI
Sbjct: 170 NKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLPHDSI 229
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
T+WDD ++A L++FF ++TA+LR++I F+QK GES EAWERFK C HHG K
Sbjct: 230 TTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGESFCEAWERFKGYTNQCSHHGFTKA 289
Query: 119 A 119
+
Sbjct: 290 S 290
>emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana]
gi|2129618|pir||S66306 hypothetical protein 1 -
Arabidopsis thaliana retrotransposon Athila
Length = 935
Score = 114 bits (286), Expect = 8e-24
Identities = 58/121 (47%), Positives = 76/121 (61%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G EDP H+ F RL K N ++ +L LFPFSL D+A W +L GSI
Sbjct: 84 NKFHGLLMEDPLDHLDEFERLCRLTKINGVSEDGFKLRLFPFSLGDKAHLWEKTLPHGSI 143
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
T+WDD ++A LA+FF S+TA+LR++I F QK ES EAWERFK CPHHG ++
Sbjct: 144 TTWDDCKKAFLAKFFSNSRTARLRNEISGFTQKQNESFCEAWERFKGYPTKCPHHGFKEA 203
Query: 119 A 119
+
Sbjct: 204 S 204
>emb|CAB81134.1| putative athila transposon protein [Arabidopsis thaliana]
gi|25354974|pir||B85075 probable athila transposon
protein [imported] - Arabidopsis thaliana
Length = 866
Score = 114 bits (285), Expect = 1e-23
Identities = 57/121 (47%), Positives = 75/121 (61%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ F RL K N + +L LFPFSL D+A W +L SI
Sbjct: 52 NKFYGLPMEDPLDHLDEFDRLCNLTKINGVSADGFKLRLFPFSLGDKAHIWEKNLPHDSI 111
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
+WDD ++A L++FF ++TA+LR++I F+QK GES EAWERFK CPHHG K
Sbjct: 112 ITWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGESFCEAWERFKGYTNQCPHHGFTKA 171
Query: 119 A 119
+
Sbjct: 172 S 172
>gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana]
Length = 703
Score = 114 bits (285), Expect = 1e-23
Identities = 58/121 (47%), Positives = 74/121 (60%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ F RL K N ++ +L LFPFSL D+A W SL GSI
Sbjct: 52 NKFHGLPMEDPLDHLDEFDRLCSLTKINGVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSI 111
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
TSW+D ++A LA+FF S+TA+LR+ I F Q + E+ EAWE FK CPHHG K
Sbjct: 112 TSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNETFCEAWECFKGYQTQCPHHGFSKA 171
Query: 119 A 119
+
Sbjct: 172 S 172
>gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|20197712|gb|AAM15220.1| putative Athila retroelement
ORF1 protein [Arabidopsis thaliana]
Length = 277
Score = 114 bits (284), Expect = 1e-23
Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P +DP H+ SF RL G N ++ + LFPFS+ D+A W +L SI
Sbjct: 104 NKFHGLPMKDPLDHLDSFDRLCGLTNINGVTEDMFKQRLFPFSVGDKAHHWEKTLPSDSI 163
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
TSWDD ++A LA+FF + T +LR++I FNQK+ E+ EAWERFK CPHHG +K
Sbjct: 164 TSWDDCKKAFLAKFFSNACTTRLRNEISGFNQKNNETFCEAWERFKSYTTQCPHHGFKKA 223
Query: 119 A 119
+
Sbjct: 224 S 224
>gb|AAD20430.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25411482|pir||C84506 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 622
Score = 114 bits (284), Expect = 1e-23
Identities = 57/119 (47%), Positives = 74/119 (61%), Gaps = 3/119 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
++F G EDP H+ F L T+K N ++A +L LFPFSL DRA W +L SI
Sbjct: 70 SKFHGLSMEDPLDHLEQFDMLCSTVKINGISEDAFKLRLFPFSLGDRARIWEKNLPQRSI 129
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEK 117
TSWD +RA L++FF ++TA+LR++I F Q+ ES EAWERFK CPHHG K
Sbjct: 130 TSWDQCKRAFLSKFFSTTRTARLRNEISSFTQRSNESFCEAWERFKGYKMQCPHHGFSK 188
>gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 hypothetical
protein - barley
Length = 337
Score = 114 bits (284), Expect = 1e-23
Identities = 55/118 (46%), Positives = 77/118 (64%), Gaps = 3/118 (2%)
Query: 1 QNQFSGSPTEDPNLHISSFLRLSGTIKE---NQEALRLHLFPFSLRDRASAWFHSLEVGS 57
+ QFSG P+ED H+++F+ L K+ + + ++L LFPFSLRDRA WF SL S
Sbjct: 44 KEQFSGLPSEDVASHLNTFIELCDMQKKKDVDNDVIKLKLFPFSLRDRAKTWFSSLPKSS 103
Query: 58 ITSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGL 115
I SWD + A ++++FPP+K LR+ IM F Q D E + +AWER K M+R CP +GL
Sbjct: 104 IDSWDKCKDAYISKYFPPAKIISLRNDIMNFKQLDHEHVAQAWERMKLMIRNCPANGL 161
>emb|CAB77937.1| putative athila transposon protein [Arabidopsis thaliana]
gi|4325357|gb|AAD17354.1| contains similarity to
Arabidopsis thaliana retrotransposon Athila hypothetical
protein 1 (GB:X81801) gi|25407410|pir||H85076 probable
athila transposon protein [imported] - Arabidopsis
thaliana
Length = 446
Score = 113 bits (283), Expect = 2e-23
Identities = 57/121 (47%), Positives = 78/121 (64%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP ++ SF RL G K N ++ +L LFPFSL D+A W +L SI
Sbjct: 60 NKFHGLPKEDPLDNLDSFDRLCGLTKINGVTKDMFKLRLFPFSLGDKAHHWKKTLPPDSI 119
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
TSWDD ++ LA+FF ++TA+LR++I F QK+ E+ +EA ERFK CPHHG +K
Sbjct: 120 TSWDDCKKDFLAKFFSNARTARLRNEISGFTQKNNETFFEASERFKSYTTYCPHHGFKKA 179
Query: 119 A 119
+
Sbjct: 180 S 180
>gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354975|pir||C84493 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 929
Score = 113 bits (283), Expect = 2e-23
Identities = 57/121 (47%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ RL G K N ++ +L LFPFSL D+A W +L SI
Sbjct: 84 NKFHGLPMEDPLDHLDELERLCGLTKINGVSEDGFKLRLFPFSLGDKAHLWEKTLPKNSI 143
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
T+WDD + A LA+FF S+TA+LR++I F K ES EAWERFK CPHHG +
Sbjct: 144 TTWDDCKMAFLAKFFSNSRTARLRNEISGFTLKQNESFCEAWERFKGYQTKCPHHGFSQA 203
Query: 119 A 119
+
Sbjct: 204 S 204
>gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana]
Length = 346
Score = 113 bits (282), Expect = 2e-23
Identities = 56/121 (46%), Positives = 74/121 (60%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ F RL K N ++ +L LFPFSL D+A W +L GSI
Sbjct: 52 NKFHGLPMEDPLDHLDEFERLCDLTKINGVSEDGFKLRLFPFSLGDKAHLWEKTLPQGSI 111
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
T+WDD ++ L +FF S+TA+L ++I F QK ES EAWERFK CPHHG ++
Sbjct: 112 TTWDDCKKVFLEKFFSNSRTARLWNEISGFTQKQNESFCEAWERFKGYQTKCPHHGFKEA 171
Query: 119 A 119
+
Sbjct: 172 S 172
>gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354976|pir||E84475 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 750
Score = 105 bits (263), Expect = 4e-21
Identities = 53/121 (43%), Positives = 71/121 (57%), Gaps = 3/121 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P ED H+ F RL K N ++ + LFPFSL D+ W +L SI
Sbjct: 52 NKFHGLPMEDSLDHLDEFERLCDLTKINGVSEDGFKFRLFPFSLGDKTHLWEKTLPQNSI 111
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEKV 118
T+WDD ++A A+FF S+TA+LR++I F QK ES EAWERFK CPH G ++
Sbjct: 112 TTWDDCKKAFFAKFFSNSRTARLRNEISGFTQKQNESFCEAWERFKGYQTKCPHPGFKQA 171
Query: 119 A 119
+
Sbjct: 172 S 172
>gb|AAF67372.1| Hypothetical protein T15F17.d [Arabidopsis thaliana]
Length = 677
Score = 103 bits (256), Expect = 2e-20
Identities = 52/106 (49%), Positives = 70/106 (65%), Gaps = 3/106 (2%)
Query: 2 NQFSGSPTEDPNLHISSFLRLSGTIKEN---QEALRLHLFPFSLRDRASAWFHSLEVGSI 58
N+F G P EDP H+ F RL K N ++ +L LFPFSL D+A W +L SI
Sbjct: 52 NKFHGLPMEDPLDHLDEFNRLYNLTKINGVSEDGFKLRLFPFSLGDKAHMWEKNLPHDSI 111
Query: 59 TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFK 104
T+WDD ++A L++FF ++TA+LR++I F+QK GES EAWERFK
Sbjct: 112 TTWDDCKKAFLSKFFSNARTARLRNEISGFSQKIGESFCEAWERFK 157
>ref|XP_475041.1| OSJNBa0042F21.11 [Oryza sativa (japonica cultivar-group)]
gi|38347309|emb|CAE02304.2| OSJNBa0042F21.11 [Oryza
sativa (japonica cultivar-group)]
Length = 920
Score = 102 bits (255), Expect = 3e-20
Identities = 53/116 (45%), Positives = 71/116 (60%), Gaps = 4/116 (3%)
Query: 4 FSGSPTEDPNLHISSFLRLSG--TIKE-NQEALRLHLFPFSLRDRASAWFHSLEVGSITS 60
F G P ED N H+ FL + TIK + +A+RL LFPFSL RA WF++ +I +
Sbjct: 268 FCGKPNEDANAHLLQFLEICSMYTIKGVSPDAVRLRLFPFSLLRRAKQWFYA-NCAAINT 326
Query: 61 WDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLE 116
WD + L++FFP KT LR +I RF Q ES+ EAWER +E + CPHHG++
Sbjct: 327 WDKCSTSFLSKFFPIGKTNALRGRISRFQQTRDESIPEAWERLQEYVAACPHHGMD 382
>ref|XP_474896.1| OSJNBa0021F22.23 [Oryza sativa (japonica cultivar-group)]
gi|58532094|emb|CAD40055.3| OSJNBa0085C10.7 [Oryza
sativa (japonica cultivar-group)]
gi|38346490|emb|CAE03729.2| OSJNBa0021F22.23 [Oryza
sativa (japonica cultivar-group)]
Length = 489
Score = 102 bits (253), Expect = 5e-20
Identities = 51/116 (43%), Positives = 67/116 (56%), Gaps = 4/116 (3%)
Query: 4 FSGSPTEDPNLHISSFLRLSGTIK---ENQEALRLHLFPFSLRDRASAWFHSLEVGSITS 60
F G P ED N H+ FL + T + +A+RL LFPFSL RA WF++ V +I +
Sbjct: 45 FCGKPNEDANAHLQQFLEICSTYTIKGVSPDAVRLRLFPFSLLGRAKQWFYANRV-AINT 103
Query: 61 WDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLE 116
WD L++FFP KT LR +I F Q ES+ EAWER E + CPHHG++
Sbjct: 104 WDKCSTTFLSKFFPMGKTKALRGRISSFQQTRDESIPEAWERLHEYVAACPHHGMD 159
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.365 0.161 0.617
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 880,366,253
Number of Sequences: 2540612
Number of extensions: 29269426
Number of successful extensions: 132808
Number of sequences better than 10.0: 425
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 132284
Number of HSP's gapped (non-prelim): 485
length of query: 653
length of database: 863,360,394
effective HSP length: 135
effective length of query: 518
effective length of database: 520,377,774
effective search space: 269555686932
effective search space used: 269555686932
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 78 (34.7 bits)
Medicago: description of AC135416.5