BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135319.4 - phase: 0
(581 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 220 9e-56
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 219 1e-55
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 179 2e-43
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 168 5e-40
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 168 5e-40
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 166 2e-39
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 165 4e-39
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 163 2e-38
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 159 3e-37
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 156 2e-36
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 148 5e-34
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 147 9e-34
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 145 3e-33
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 145 5e-33
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 144 1e-32
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 144 1e-32
emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|49720... 143 1e-32
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 140 1e-31
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 140 1e-31
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 139 2e-31
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 220 bits (561), Expect = 9e-56
Identities = 157/598 (26%), Positives = 269/598 (44%), Gaps = 23/598 (3%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT- 59
+ RLA WK R L+ GR+TL +VL+SIP + M LP + D++D+ +R F+W T
Sbjct: 635 VSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTM 694
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYT- 118
K HL++W+KI PK GG+ +R+AR+ N +L+ K+ W ++Q LW ++ KY
Sbjct: 695 EKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKV 754
Query: 119 -GGHNTLYASANNRSSPTWSSI-IRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPI--- 172
G +T + R S TW S+ + + ++ G W G G + FW W P+
Sbjct: 755 GGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVEL 814
Query: 173 -GNYVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIW 231
+ +P + ++++ L G + +L LP V+ + ++ Q D + W
Sbjct: 815 GTDMIP--EGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISW 872
Query: 232 SQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLS 291
++G +T +S ++ L+ V + ++ IW+L PE+ + IWL QN + T
Sbjct: 873 KGTQDGAFTVRSAYS-LLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNV 931
Query: 292 LLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQK-IGFTSNDFVTTATTYDWIKL 350
R ++ + IC+ C +ET +H +RDC + IW++ + + + + +W+
Sbjct: 932 ERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFT 991
Query: 351 G---ISGSRSSIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISAADAAN----SAFNG 403
+ G ++F G+WW W+ R + RL I A+ A
Sbjct: 992 NMDPVKGIWPTLFGMGIWWAWKWRCCDVFGERKICRDRL-KFIKDMAEEVRRVHVGAVGN 1050
Query: 404 EENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGLIPNS 463
N +R+++W + + DG+ G GG +RN G ++ GF+ L S
Sbjct: 1051 RPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFA-LNIGS 1109
Query: 464 ADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQNIKDLL 523
LAEL + GL + D + D L V ++ H + L++ +
Sbjct: 1110 CAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFF 1169
Query: 524 -NDRNISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLRADALGIYFVR 580
D + + H RE N+ AD A + L + P + LL AD G F R
Sbjct: 1170 TRDWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTEFPR 1227
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 219 bits (559), Expect = 1e-55
Identities = 161/599 (26%), Positives = 264/599 (43%), Gaps = 33/599 (5%)
Query: 3 TRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTNK 62
+RLA W+ R L+ GRLTL +VL S+P + M T LP++ D +DQ +R+F+W T K
Sbjct: 22 SRLAGWRGRFLSLAGRLTLTKAVLASLPVHTMTTIVLPKSTLDKLDQLSRSFLWGSTPEK 81
Query: 63 -GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYT--G 119
+HL+ W ++ LPK GGL IR+AR N +LL K+ W +++ LW +L +KY G
Sbjct: 82 RKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARVLRSKYRIGG 141
Query: 120 GHNTLYASANNRSSPTWSSIIRA-KNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVP 177
+T + + +S TW SI + ++ G W +G G FW W PI +
Sbjct: 142 LRDTTWINTKRNASSTWRSIKSGLREVVIPGMNWVVGDGKDICFWDDKWLVEDPIRDLAA 201
Query: 178 VIDVHDLQ-LSVRDVL-SAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNK 235
V D Q + +R++ G + + V + ++ D W
Sbjct: 202 VELPADFQGIKIRELWHEGSGWDLAKIIPYVSEGVRLRLLSMVVDTVTGSNDRTSWGATA 261
Query: 236 NGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSLLYH 295
NG +T KS +++L+ S A + + + +WR+ E+ + IWL + T
Sbjct: 262 NGQFTVKSAYSFLLQSETQA-QNMRQFFDRVWRVTTTERVRVFIWLVVHQVIMTDVERRR 320
Query: 296 RSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI---GFTSNDFVTTATTYDWIKLGI 352
R ++ S +C C DET +H +RDC IW ++ G + F + DW+ +
Sbjct: 321 RHLSASGVCQVCKGGDETILHVLRDCPSIAGIWGRLVPRGKITAFF--ASNILDWVYQNL 378
Query: 353 SGSR-------SSIFLAGLWWVWRHR-------NLMCLNNETLSLFRLCNNIISAADAAN 398
S +++F +WW W+ R N C + + + I+ +
Sbjct: 379 SDVTEIRGCPWATLFAIVVWWAWKWRCGNVFGENGRCRDRVRFVVDQAREIWIAHLNLRR 438
Query: 399 SAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSG 458
A G E + +KW + F LN DG+ G P GGV+R+ G + GF
Sbjct: 439 GAMRGSE----VEMSIKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFV- 493
Query: 459 LIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQN 518
L LAEL ++ GL + + + + DS L V + H + L++
Sbjct: 494 LNIGICSAPLAELWGVYYGLHIAWERGIRRLELEVDSTLVVGFLQAGIEDSHPLSFLVRL 553
Query: 519 IKDLLN-DRNISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLRADALGI 576
++ D + + H RE N+ AD A + + S PA + + DA G+
Sbjct: 554 CYGFISRDWIVRISHVYREANRLADGLANYAFSLPLGFHACGSMPAPVASIALEDAAGV 612
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 179 bits (454), Expect = 2e-43
Identities = 150/584 (25%), Positives = 252/584 (42%), Gaps = 44/584 (7%)
Query: 4 RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTNKG 63
RL W LL+ G+ L SV+ +IP Y M LP+++C+ + + TRNF W K
Sbjct: 286 RLIIWGENLLSSGGKEVLIKSVIQTIPVYVMGIFNLPESVCEELTKLTRNFWWGVEKGKR 345
Query: 64 -IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
H +W+ ++ PK+ GGL R R N +LL + W ++ + + L +L KY +
Sbjct: 346 KTHWKSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKYFPNGS 405
Query: 123 TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVIDV 181
+ S +SP W +I ++LK+G WRIG+G S W W L + P+
Sbjct: 406 LVDTSFGGNASPVWKAIEYGLSLLKEGIIWRIGNGKSVRIWRDPW--LPRDFSRRPITRK 463
Query: 182 HDLQLS-VRDVLSAPG--NHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGT 238
+ +L V ++LS G + RV LP D E I +I +D + W +K+G
Sbjct: 464 GNCRLKWVSELLSENGAWDETRVNQVFLPVDAE-AICSIRVSSRQE-DDFVAWHPDKHGK 521
Query: 239 YTTKSGFNW------LITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSL 292
++ +S + + TS + W+ IW+ P+K + W A N + T+
Sbjct: 522 FSVRSAYGLACNLVNMETSSSSSSARCKRMWNLIWQTNAPQKVRIFAWRAATNCLATMEN 581
Query: 293 LYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTAT-------TY 345
R + S IC CG E E H + C ++++W + N + +
Sbjct: 582 KAKRKLEQSDICLVCGLEKEDTKHVLCRCPDARNLWGAMCEAGNISLNGGNLCNDPGWIF 641
Query: 346 DWIKLGISGSRSSIFLAGLWWVWRHRNLMC--------------LNNETLSLFRLCNNII 391
D +++ + R ++FL LW +W RN + L + SL + +
Sbjct: 642 DQLEILLDYER-TVFLLILWRIWFVRNEIVHGKQPPPIEASKRFLESYVKSLLEIRQHPQ 700
Query: 392 SAADAAN---SAFNGEENP---PHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVL 445
+ + S NG+ NP P D+ KW +NVDGS G G V+
Sbjct: 701 ANVEKGKHVISFVNGKTNPARRPPEDKNQKWRKPCEGWMKVNVDGSFDAQTGSGGIGVVM 760
Query: 446 RNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIAND 505
R+ +G I +P L +E+ A +G+ + ++ + + +D L+ V ++ +
Sbjct: 761 RDWSGKVIFACCKHLPRCGSALESEILACKEGILVGLQWSLRQFVVETDCLMVVQMLESK 820
Query: 506 TPRYHIYAALIQNIKDLLN-DRNISLHHTLREGNQCADFFAKFG 548
A L++ +LL+ DR I L R N + A G
Sbjct: 821 EREMSEVAFLVKEATELLSGDREIQLRKIHRSQNSVSHLLANKG 864
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 168 bits (425), Expect = 5e-40
Identities = 146/553 (26%), Positives = 229/553 (41%), Gaps = 49/553 (8%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
M ++ +W N+LL+ G+ L S++T+IP+Y M LP + I R F W T
Sbjct: 227 MDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTK 286
Query: 61 NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
K I V W K++ PK +GGL+IR ++ N +LL K W ++Q L + KY
Sbjct: 287 VKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFP 346
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPV 178
L A A ++SS W SI+ ++ G + G+G++ W NW L+P V
Sbjct: 347 KERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGT 406
Query: 179 IDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGT 238
D QL V D+L + +L + + HI I DA+ W +G
Sbjct: 407 CDSIYSQLKVSDLLIEGRWNEDLLCKLIHQNDIPHIRAIRPSIT-GANDAITWIYTHDGN 465
Query: 239 YTTKSGFNWL--ITSRVPAIEPILH------AWSWIWRLKVPEKYKFLIWLACQNAVPTL 290
Y+ KSG++ L ++ + A P + ++ IW+ P K K W + NA+PT
Sbjct: 466 YSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTA 525
Query: 291 SLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI--------GFTSNDFVTTA 342
L R + C RCGE E H + C SK+IW++ SN F
Sbjct: 526 GNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNSFNQNL 585
Query: 343 TTYDWIKLGISGSRS-SIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISAADAANSAF 401
+ KL S + S+F W +W+ RN + NN+ S+ + +
Sbjct: 586 ESIQ--KLNQSARKDVSLFPFIGWRIWKMRNDLIFNNKRWSIPDSIQKALIDQQQWKESL 643
Query: 402 NGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLR-----NSAGLFISGF 456
N E +L +N C YGG L+ + A + G
Sbjct: 644 NCNEQQQRKPQLHDSHN-----------NKC--------YGGHLKTLRTLSKAQFVLRGM 684
Query: 457 SGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTP--RYHIYAA 514
S + P S L AE A+ + + L +I+ + D I T Y A
Sbjct: 685 SSIPPTSTP-LEAEAEALKLAMIHLQRLGYEDIIFHGDVAALFQPITRTTHSCEYSPIAT 743
Query: 515 LIQNIKDLLNDRN 527
+++I+++ D N
Sbjct: 744 FLRDIENIAADTN 756
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 168 bits (425), Expect = 5e-40
Identities = 156/609 (25%), Positives = 246/609 (39%), Gaps = 65/609 (10%)
Query: 4 RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-K 62
R+ W L+ G+ L +V+ +IP Y M LP+++ D + + T+NF W +
Sbjct: 185 RVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQR 244
Query: 63 GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
H W ++ PK++GGL R N +LL + W ++ + L +L KY +
Sbjct: 245 KTHWKAWDSLTKPKSLGGLGFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGS 304
Query: 123 TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVIDV 181
+ S + SSP W SI ++LK G WR+G+G+S W W L + P+
Sbjct: 305 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPW--LPRDHSRRPITGK 362
Query: 182 HDLQLS-VRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNI-------EDALIWSQ 233
+ +L V D+++ G+ P + + +N+ + NI ED + W
Sbjct: 363 ANCRLKWVSDLITEDGSWD-------VPKIHQYFHNLDAEVILNICISSRSEEDFIAWHP 415
Query: 234 NKNGTYTTKSGFNWLITSRVPAIEP--------ILHAWSWIWRLKVPEKYKFLIWLACQN 285
+KNG ++ +S + + +++ IE I AW IW+ KVP+K K W N
Sbjct: 416 DKNGMFSVRSAYR--LAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASN 473
Query: 286 AVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIW---QKIGFTSNDFVTTA 342
+ T+ R + S +C C E+E H + C + +W K G S D +
Sbjct: 474 CLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASV 533
Query: 343 TTYDWI---KLGISGSRSSIFLAGLWWVWRHRNLMCLNNE---TLSLFRLCNNIISAADA 396
W+ I ++FL LW W RN + T + R + +
Sbjct: 534 LGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQ 593
Query: 397 ANSAFNGE-ENPPHSDRLVKWNN-------RNHQD---------FILNVDGSCIGTPPRT 439
A + H R V NHQ LNVDGS + +
Sbjct: 594 IRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKG 653
Query: 440 GYGGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAV 499
G G +LRNSAG I + + L +EL A +GLKL + I +D V
Sbjct: 654 GLGMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVV 713
Query: 500 NLIANDTPRYHIYAALIQNIKDLL-NDRNISLHHTLREGN---------QCADFFAKFGA 549
L+ + + A +I + LL +R IS+ R N ADF A F
Sbjct: 714 QLLQGTGRDFSVLANIIHEARHLLVGERVISIKKICRSQNCISHHLANTARADFLAGFWL 773
Query: 550 NSDAALVVH 558
L+ H
Sbjct: 774 GESCNLISH 782
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 166 bits (419), Expect = 2e-39
Identities = 145/564 (25%), Positives = 233/564 (40%), Gaps = 55/564 (9%)
Query: 4 RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-K 62
R+ W L+ G+ L +V+ +IP Y M LP+++ D + + T+NF W +
Sbjct: 1509 RVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQR 1568
Query: 63 GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
H W ++ PK++GGL R R N +LL + W ++ + L +L KY +
Sbjct: 1569 KTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGS 1628
Query: 123 TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVIDV 181
+ S + SSP W SI ++LK G WR+G+G+S W +W L + P+
Sbjct: 1629 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSW--LPRDHSRRPITGK 1686
Query: 182 HDLQLS-VRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNI-------EDALIWSQ 233
+ +L V D+++ G+ P + + +N+ + NI ED + W
Sbjct: 1687 ANCRLKWVSDLITEDGSWD-------VPKIHQYFHNLDAEVILNICISSRSEEDFIAWHP 1739
Query: 234 NKNGTYTTKSGFNWLITSRVPAIEP--------ILHAWSWIWRLKVPEKYKFLIWLACQN 285
+KNG ++ +S + + +++ IE I AW IW+ KVP+K K W N
Sbjct: 1740 DKNGMFSVRSAYR--LAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASN 1797
Query: 286 AVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIW---QKIGFTSNDFVTTA 342
+ T+ R + S +C C E+E H + C + +W K G S D +
Sbjct: 1798 CLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASV 1857
Query: 343 TTYDWI---KLGISGSRSSIFLAGLWWVWRHRNLMCLNNE---TLSLFRLCNNIISAADA 396
W+ I ++FL LW W RN + T + R + +
Sbjct: 1858 LGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQ 1917
Query: 397 ANSAFNGE-ENPPHSDRLVKWNN-------RNHQD---------FILNVDGSCIGTPPRT 439
A + H R V NHQ LNVDGS + +
Sbjct: 1918 IRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKG 1977
Query: 440 GYGGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAV 499
G G +LRNSAG I + + L +EL A +GLKL + I +D V
Sbjct: 1978 GLGMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVV 2037
Query: 500 NLIANDTPRYHIYAALIQNIKDLL 523
L+ + + A +I + LL
Sbjct: 2038 QLLQGIGRDFSVLANIIHEARHLL 2061
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 165 bits (417), Expect = 4e-39
Identities = 137/538 (25%), Positives = 228/538 (41%), Gaps = 66/538 (12%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
+ +RLA WK R L+ GRLTL SVL+ IP + M T LPQ+ + +D+ R F+ +
Sbjct: 449 VSSRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLGSSA 508
Query: 61 NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
K +HLV W ++ LPK+ GGL IR ++ N +L+ K+ W ++ LW +L +KY
Sbjct: 509 EKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSKYRV 568
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPV 178
G + ++ G W +G+G FW NW S + N +
Sbjct: 569 G---------------------LREVVSRGSRWVVGNGRDILFWSDNWLSHEALINRAVI 607
Query: 179 -IDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHIN-NIHTQFNDNI---EDALIWSQ 233
I + +L V+D+ + N + P + H + D++ D L W
Sbjct: 608 EIPNSEKELRVKDLWA---NGLGWKLDKIEPYISYHTRLELAAVVVDSVTGARDRLSWGY 664
Query: 234 NKNGTYTTKSGFNWLITSRVPAIEPILHA-WSWIWRLKVPEKYKFLIWLACQNAVPTLSL 292
+ +G +T KS + L P P + A + +WR+ E+ K +W
Sbjct: 665 SADGVFTVKSAYRLLTEDHDP--RPNMAAFFDRLWRVVALERVKTFLW------------ 710
Query: 293 LYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDF-VTTATTYDW--IK 349
+ + +C C DET +H ++DC IW+++ + + + W +
Sbjct: 711 ----HIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYVN 766
Query: 350 LGISGSR-----SSIFLAGLWWVWRHRNLMCLN-----NETLSLFRLCNNIISAADAANS 399
LG+ + +++F +WW W+ R + + FR +S A A +S
Sbjct: 767 LGMKNAETGYAWATLFAIVVWWSWKWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHAIHS 826
Query: 400 AFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGL 459
G +RLV W + + LN DG+ G GGVLR+ G + GF+ L
Sbjct: 827 QNGGLRT--RVERLVAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFA-L 883
Query: 460 IPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQ 517
LAEL ++ GL + + + DS L V + H + L++
Sbjct: 884 DIGVCSAPLAELWGVYYGLYMAWERRFTRVELEVDSELVVGFLTTGISDTHSLSFLVR 941
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 163 bits (412), Expect = 2e-38
Identities = 137/538 (25%), Positives = 220/538 (40%), Gaps = 38/538 (7%)
Query: 65 HLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGG--HN 122
HLV W K+ PK GGL +RAA+ N +L+ K+ W ++Q N LW +L KY G +
Sbjct: 194 HLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRD 253
Query: 123 TLYASANNRSSPTWSSI-IRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVID 180
+ + S TW SI I ++++ G W G G FW W S P+
Sbjct: 254 SRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSGKPLLELDNGER 313
Query: 181 VHDLQLSVRDVLSAPGNHARVLYTNLPPDVENH----INNIHTQFNDNIEDALIWSQNKN 236
D V L PG + + P N+ + + D L W +++
Sbjct: 314 PTDCDTVVAKDLWIPGRGWD--FAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQD 371
Query: 237 GTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSLLYHR 296
G ++ +S + L VP + ++ +W+++VPE+ K +WL AV T + R
Sbjct: 372 GQFSVRSAYEMLTVDEVPR-PNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRR 430
Query: 297 SMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI-------GFTSNDFVTTATTYDWIK 349
++ S +C C E+ +H +RDC IW ++ GF S + ++W+
Sbjct: 431 HLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSK------SLFEWLY 484
Query: 350 LGISGSR--------SSIFLAGLWWVWRHR--NLMCLNNETLSLFRLCNN-IISAADAAN 398
+ G R S+IF +WW W+ R N+ N + + + A +
Sbjct: 485 DNL-GDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHS 543
Query: 399 SAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSG 458
P +R++ W + +N DG+ G P GGVLR+ G + GFS
Sbjct: 544 GNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFS- 602
Query: 459 LIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQN 518
L AEL ++ GL + V + DS + V + H + L++
Sbjct: 603 LNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRL 662
Query: 519 IKDLL-NDRNISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLRADALG 575
L D + + H RE N+ AD A + + P + LLR D LG
Sbjct: 663 CHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLG 720
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 159 bits (401), Expect = 3e-37
Identities = 105/391 (26%), Positives = 188/391 (47%), Gaps = 38/391 (9%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIW-RGT 59
+ TRLA WK R L+ GR+TL +VL+SIP + M T LP++ D +D+ +R+F+W
Sbjct: 297 LTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSV 356
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKY-- 117
T + HL++WK++ P++ GGL IR A++ N +LL K+ W ++Q + LW ++ Y
Sbjct: 357 TQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRV 416
Query: 118 TGGHNTLYASANNRSSPTWSSI-IRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNY 175
+ + + S TW S+ + + ++ G +W IG G FW W + P+
Sbjct: 417 QDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDKWLTNIPLA-- 474
Query: 176 VPVIDVHDLQLSVRDVLSA-PGNHARVLYTN--------LPPDVENHINNIHTQ--FNDN 224
+L V++ + G AR L N + P + ++ N + Q D+
Sbjct: 475 ---------ELLVQEPPAGWKGMRARDLRRNGIGWDMATIAPYISSY-NRLQLQSFVLDD 524
Query: 225 I---EDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWL 281
I D + W ++++G + + +++L P + + + +W + PE+ + +WL
Sbjct: 525 ITGARDRISWGESQDGRFKVSTTYSFLTRDEAPR-QDMKRFFDRVWSVTAPERVRLFLWL 583
Query: 282 ACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTT 341
Q A+ T + R ++ + IC C E+ +H +RDC + IW ++ + V+
Sbjct: 584 VAQQAIMTNQERHRRHLSTTTICQVCKGAKESIIHVLRDCPAMEGIWLRLISDLANEVSA 643
Query: 342 ATTYDWIKLGISGSRSSIFLAGLWWVWRHRN 372
A L +SG+ I WR N
Sbjct: 644 A------HLKLSGNTKEIVQVERQVSWRKPN 668
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 156 bits (394), Expect = 2e-36
Identities = 144/554 (25%), Positives = 226/554 (39%), Gaps = 31/554 (5%)
Query: 7 SWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-KGIH 65
SW +R L++ G+ + +VL S+P Y M LP +C I F W + +
Sbjct: 673 SWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTS 732
Query: 66 LVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHNTLY 125
V W K++ PKN GGL R N SLL KL W ++ S L +L KY + +
Sbjct: 733 WVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFME 792
Query: 126 ASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLS-PIGNYVPVIDVH- 182
++ S W SII + ILK+G W I +G S W W S+S P+ P + H
Sbjct: 793 CKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQ 852
Query: 183 DLQLSV---RDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGTY 239
DL++S ++ L N V+ P+ EN I + + + D L W K+G Y
Sbjct: 853 DLRVSALINQNTLQWDWNKIAVIL----PNYENLIKQLPAPSSRGV-DKLAWLPVKSGQY 907
Query: 240 TTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSLLYHRSMA 299
T++SG+ + +P + + S +W+L+ K K L+W A A+P L R ++
Sbjct: 908 TSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHIS 967
Query: 300 PSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYD---WIKLGISGSR 356
PS C RCG + T H C F+ +W+ ++ D +K I
Sbjct: 968 PSAACHRCGAPEST-THLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPP 1026
Query: 357 SSIFLAGL--WWVWRHRNLMCLNNETLSLFRLCNNIISAADAANSAFNGEENPPHSDRLV 414
+ + A L W + L + L A +A N H +
Sbjct: 1027 TGVTSAALFPWICGIYGKLGTMTRAILDAL--------AWQSAQRCLPKTRNVVHPISQL 1078
Query: 415 KWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGL--FISGFSGLIPNSADILLAELT 472
+ F VD + I G G V +++ L + +S L AE
Sbjct: 1079 PVLRSGYFCF---VDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCRRLPSALSAEAW 1135
Query: 473 AIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQNIKDLLNDRNISLHH 532
AI L L ++M SDS V+ + ++ IY L++ ++ ++ +
Sbjct: 1136 AIKSALLHALQLGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEIRALRVSFHSLCFNF 1195
Query: 533 TLREGNQCADFFAK 546
R N AD AK
Sbjct: 1196 ISRSANAIADATAK 1209
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 148 bits (373), Expect = 5e-34
Identities = 137/577 (23%), Positives = 235/577 (39%), Gaps = 45/577 (7%)
Query: 4 RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTNKG 63
R+ W +R L++ G T+ +V +IP+Y M +P +IC+ + + W K
Sbjct: 790 RVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKK 849
Query: 64 -IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
+H +W +S PK +GG+ R N ++LG+ W ++ + L +L +Y +
Sbjct: 850 KMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSS 909
Query: 123 TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSSFWFS-NW---------NSLSPI 172
A+ S TW S++ + +L G W +G G + FS NW +LSP
Sbjct: 910 FWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPF 969
Query: 173 GNYVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWS 232
D L D G+ R L+ P D+ I I + + D W
Sbjct: 970 PT-----DATVSCLMNEDARCWDGDLIRSLF---PVDIAKEILQIPISRHGD-ADFASWP 1020
Query: 233 QNKNGTYTTKSGFNWLITSRVPAIEP---------ILHA---WSWIWRLKVPEKYKFLIW 280
+K G Y+ +S +N + A + +L + W +W++ P K K +W
Sbjct: 1021 HDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLW 1080
Query: 281 LACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI------GFT 334
A + T L R + + C C D+T H C F+ IW++I
Sbjct: 1081 RAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLG 1139
Query: 335 SNDFVTTAT-TYDWIKLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISA 393
N F T +D++K G S +++ W +W RN NN T+ R+ I+S
Sbjct: 1140 RNGFSTMRQWIFDFLKRG-SSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSY 1198
Query: 394 ADAA---NSAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAG 450
D N+ + ++ + +W +++N D + + G G ++R++ G
Sbjct: 1199 VDMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTG 1258
Query: 451 LFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYH 510
+ S +I + LAE AI + L L + + I+ SD L + I
Sbjct: 1259 KCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDRS 1318
Query: 511 IYAALIQNIKDLLNDRNI-SLHHTLREGNQCADFFAK 546
+I++IK L + + S H R N A A+
Sbjct: 1319 GVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLAR 1355
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 147 bits (371), Expect = 9e-34
Identities = 126/540 (23%), Positives = 227/540 (41%), Gaps = 44/540 (8%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
++++L+SW ++ L++ G+ + +V ++P + M LP+ C ++ +F W
Sbjct: 620 LKSKLSSWFSKSLSQGGKEIMLKAVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSAND 679
Query: 61 N-KGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
+ + IH ++W+K+ LPK GGL R N +LL K W ++Q + L+ L+ ++Y
Sbjct: 680 HQRKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFP 739
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNW---NSLSPIGNY 175
L + +R S W SI+ +++L G R+G+G S W W N L
Sbjct: 740 VGEFLDSDVGSRPSFGWRSILHGRDLLCRGLVKRVGNGKSIRVWIDYWLDDNGLRAPWIK 799
Query: 176 VPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNK 235
P+I+V L + D ++ P DV N +++D IW NK
Sbjct: 800 NPIINVDLLVSDLIDYEKRDWRLDKLEEQFFPDDVVKIRENRPVV---SLDDFWIWKHNK 856
Query: 236 NGTYTTKSGFNWLITSR---VPAIEPILH-----AWSWIWRLKVPEKYKFLIWLACQNAV 287
+G Y+ K G+ WL +++ AIE ++ + +W+L+ K K +W A+
Sbjct: 857 SGDYSVKLGY-WLASNQNLGQVAIEAMMQPSLNDLKTQVWKLQTEPKIKVFLWKVLSGAI 915
Query: 288 PTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQK-------IGFTSNDFVT 340
P + LL +R M C CG E E+ H + C F + +W +GF
Sbjct: 916 PVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPLLGFECGSVYA 975
Query: 341 TATTY----DWIKLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIIS---- 392
+ D +K + RS ++ +W +W++RNL + ++ +
Sbjct: 976 NLYHFLINRDNLKWPVELRRSFPWI--IWRIWKNRNLFFFEGKRFTVLETILKVRKDVED 1033
Query: 393 --AADAANSAFNGEE--------NPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYG 442
AA E +P + +V+W NV S G
Sbjct: 1034 WFAAQVVEKERRAEVGQSDQQVFSPRNVSPVVRWLPPPTDWVKCNVGLSWSRRNRLAGVA 1093
Query: 443 GVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLI 502
VLRN G + N + L A+ +I ++ + +VN ++ ++ + V +I
Sbjct: 1094 WVLRNDRGNVLMHSRRAFSNISSFLEAQFLSIVWAVESMVSHHVNRVVFGVEAAVLVGVI 1153
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 145 bits (367), Expect = 3e-33
Identities = 132/570 (23%), Positives = 236/570 (41%), Gaps = 28/570 (4%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT- 59
+Q+R+ W + L+K G+ + SV ++P Y M LP+ I + F W
Sbjct: 556 LQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNG 615
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
++G+H + W K+ K+ GGL R + N++LL K +W ++ + + L+ + +Y
Sbjct: 616 DSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFR 675
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPV 178
N L + + S W S+I A++++ G R+GSG+S S W W
Sbjct: 676 KSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYG 735
Query: 179 IDVHDLQLSVRDVLSAPGNHARV-LYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNG 237
+ D L V+ ++ + N + L L + + + N N+ED L W K G
Sbjct: 736 GSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAG 795
Query: 238 TYTTKSGFNWL---ITSRVPAIEPILHAW-SWIWRLKVPEKYKFLIWLACQNAVPTLSLL 293
YT KSG++ + I P L ++IW+++ P K + +W VP L
Sbjct: 796 NYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENL 855
Query: 294 YHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIG-------FTSNDFVTTATTYD 346
R + C CG +E+ H + C ++ IW F SN T
Sbjct: 856 RKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLF 915
Query: 347 WIKLGISGSRSSIFLAGLWWVWRHRNLMCLNN---ETLSLFRLCNNIISAADAANSAFNG 403
W SG S+ + +W++W+ RN N + + + L + A +
Sbjct: 916 W--RIPSGVDSAPYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHS 973
Query: 404 EENPPHS-DRLVK----WNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSG 458
E + S D ++ + F +DGS + +G G +S G + +
Sbjct: 974 ERHGSLSIDSRIRVRDVSQDTTFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAA 1033
Query: 459 LIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDT--PRYHIYAALI 516
+ S L E+ A+ +K + + + ++D V ++++ T P + +Y +
Sbjct: 1034 NVRRSLSPLHTEMEALLWAMKCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEEL 1093
Query: 517 QNIKDLLNDRNISLHHTLREGNQCADFFAK 546
Q+ ++ N SL R N AD A+
Sbjct: 1094 QSDREEFT--NFSLSLISRSANVKADKLAR 1121
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 145 bits (365), Expect = 5e-33
Identities = 145/572 (25%), Positives = 242/572 (41%), Gaps = 50/572 (8%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
++ R SW R L+ G+ L +VL+S+PSY M LP ++C I F W
Sbjct: 713 IRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKP 772
Query: 61 NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
+K + V+W K++LP N GGL R + KL W +++ + L +L KY
Sbjct: 773 DKRKMAWVSWDKLTLPINEGGLGFR-------EIEAKLSWRILKEPHSLLSRVLLGKYCN 825
Query: 120 GHNTLYASAN-NRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVP 177
+ + SA+ + +S W I+ +++L+ G W IG G S + W W LSP P
Sbjct: 826 TSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAW--LSPSSPQTP 883
Query: 178 V---------IDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDA 228
+ + VHDL DV S + + +LP E+ I I ++D+
Sbjct: 884 IGPPTETNKDLSVHDL--ICHDVKSW---NVEAIRKHLP-QYEDQIRKITINALP-LQDS 936
Query: 229 LIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVP 288
L+W K+G YTTK+G+ + PA + + IW++ K K +W A + A+P
Sbjct: 937 LVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALP 996
Query: 289 TLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYDWI 348
L R++ C RCG + E+ +H + C ++K +W+ N + T+ +
Sbjct: 997 VGEALSRRNIEAEVTCKRCG-QTESSLHLMLLCPYAKKVWELAPVLFN---PSEATHSSV 1052
Query: 349 KLGISGSRSSIFLAG------------LWWVWRHRNLMCLNNETLSLFRLCNNIISAADA 396
L + ++ + L LW +W+ RN + +N + S L I A A
Sbjct: 1053 ALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARA 1112
Query: 397 ANSAFNGEENP-PHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISG 455
A +P P SD N ++ + G G G L++ + I
Sbjct: 1113 WMEAQLLIHHPSPISDYPSPTPNLKVTSCFVDAAWTTSG---YCGMGWFLQDPYKVKIKE 1169
Query: 456 FSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAAL 515
L+AE A+H L V ++ +SD ++L+ N L
Sbjct: 1170 NQSSSSFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLL-NSGKSIVELRGL 1228
Query: 516 IQNIKDL-LNDRNISLHHTLREGNQCADFFAK 546
+ +I++L ++ ++ R N AD AK
Sbjct: 1229 LHDIRELSVSFTHLCFFFIPRLSNVVADSLAK 1260
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 144 bits (362), Expect = 1e-32
Identities = 111/403 (27%), Positives = 178/403 (43%), Gaps = 32/403 (7%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
++ R ASW + L+ G+ L SV ++P Y M LPQ I I+ NF W +
Sbjct: 393 VKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKAS 452
Query: 61 NK-GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
NK GI V WK++ K GGL R + N +LL K W ++Q N L+ ++ +Y
Sbjct: 453 NKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFK 512
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSSFWFSNWNSLSPIGNYVP-- 177
++ + A ++ S WSS++ +L+ G + IG G + + + ++ P
Sbjct: 513 DNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKT----IRLGIDNVVDSHPPRP 568
Query: 178 -VIDVHDLQLSVRDVLSAPGNHARV-----LYTNLPPDVENHINNIHTQFNDNIEDALIW 231
+ D LS+ ++ G H+R L T + ++I I+ D LIW
Sbjct: 569 LLTDEQHNGLSLDNLFQHRG-HSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSK-TDRLIW 626
Query: 232 SQNKNGTYTTKSGFNWLIT----SRVPAI---EPILHAWSWIWRLKVPEKYKFLIWLACQ 284
S N G YT +SG+ WL T + +P + + + IW L + K K +W
Sbjct: 627 SYNSTGDYTVRSGY-WLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILS 685
Query: 285 NAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQ-------KIGFTSND 337
A+PT L R M P C RC E+E+ H + C F+ W+ + SN+
Sbjct: 686 KALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNN 745
Query: 338 FVTTATTYDWI--KLGISGSRSSIFLAGLWWVWRHRNLMCLNN 378
+ + I+ S+ I LW +W+ RN + NN
Sbjct: 746 IEDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNN 788
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 144 bits (362), Expect = 1e-32
Identities = 105/383 (27%), Positives = 171/383 (44%), Gaps = 23/383 (6%)
Query: 4 RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTNKG 63
++ W L+ G+ L +V+ +IP Y M LP+++C+ + TRNF W K
Sbjct: 1144 KILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKR 1203
Query: 64 -IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
H WK ++ K++GGL + R N +LL + W ++ + + L +L KY +
Sbjct: 1204 KTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGS 1263
Query: 123 TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVIDV 181
+ S +SP W +I ++K G WRIG+G S W W L + P+
Sbjct: 1264 IVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPW--LPRDLSRRPITPK 1321
Query: 182 HDLQLS-VRDVLSAPG--NHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGT 238
++ ++ V D++ G + ++ LP DVE I + T D ED + W +K G
Sbjct: 1322 NNCRIKWVADLMLDNGMWDANKINQIFLPVDVE-IILKLRTSSRDE-EDFIAWHPDKLGN 1379
Query: 239 YTTKSGF----NWL--ITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSL 292
++ ++ + NW S + I AW +W+ VP K K W A N +PT
Sbjct: 1380 FSVRTAYRLAENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDN 1439
Query: 293 LYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTY----DWI 348
R++ S C CG E E MH + C +K +W + SND + W+
Sbjct: 1440 KKKRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMK-ESNDLSLRMDDHLLGPSWL 1498
Query: 349 --KLG-ISGSRSSIFLAGLWWVW 368
+L + +FL LW +W
Sbjct: 1499 FNRLALLPDHEQPMFLMVLWRIW 1521
>emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|4972055|emb|CAB43923.1|
putative protein [Arabidopsis thaliana]
gi|67633766|gb|AAY78807.1| putative reverse
transcriptase/RNA-dependent DNA polymerase [Arabidopsis
thaliana] gi|15233451|ref|NP_194638.1| reverse
transcriptase, putative / RNA-dependent DNA polymerase,
putative [Arabidopsis thaliana] gi|7485741|pir||T08964
hypothetical protein F19B15.120 - Arabidopsis thaliana
Length = 575
Score = 143 bits (361), Expect = 1e-32
Identities = 135/558 (24%), Positives = 225/558 (40%), Gaps = 48/558 (8%)
Query: 28 SIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-KGIHLVNWKKISLPKNIGGLSIRAA 86
++P+Y M LP+ +C I +F WR KG+H W +S K GG+ +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 87 REANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHNTLYASANNRSSPTWSSIIRAKNIL 146
N +LLGK +W M+ L + ++Y + L A +R S W SI ++ IL
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 147 KDGYTWRIGSGSS-SFWFSNWNSLSPIG-----NYVPVIDVHDLQ--LSVRDVLSAPGNH 198
+ G +G+G W W P VP + + L V D++ G
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 199 ARV-LYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRV---- 253
R + L P+VE + I D+ W +G YT KSG+ W++T +
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGY-WVLTQIINKRS 240
Query: 254 -------PAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSLLYHRSMAPSPICTR 306
P++ PI + IW+ + K + +W N++P L +R ++ C R
Sbjct: 241 SPQEVSEPSLNPI---YQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIR 297
Query: 307 CGEEDETFMHCVRDCCFSKDIWQ------KIGFTSNDFVTTATTYDWIKLGISGSR---- 356
C ET H + C F++ W +G D + Y LG +
Sbjct: 298 CPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSI-YVNLYWVFNLGNGNPQWEKA 356
Query: 357 SSIFLAGLWWVWRHRNLMCLNNETLS----LFRLCNNIISAADAANSAFNGEENPPHSDR 412
S + LW +W++RN + + L R +++ + G + +
Sbjct: 357 SQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSS 416
Query: 413 LVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGLIPNSADILLAELT 472
+W HQ N D + R G G VLRN G + +P +L AEL
Sbjct: 417 CGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELE 476
Query: 473 AIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAAL---IQNIKDLLND-RNI 528
A+ + ++ N ++ SDS + + ++ ND I+ +L IQ+++ LL+ +
Sbjct: 477 AMRWAVLSLSRFQYNYVIFESDSQVLIEILNND----EIWPSLKPTIQDLQRLLSQFTEV 532
Query: 529 SLHHTLREGNQCADFFAK 546
REGN A+ A+
Sbjct: 533 KFVFIPREGNTLAERVAR 550
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 140 bits (353), Expect = 1e-31
Identities = 105/438 (23%), Positives = 196/438 (43%), Gaps = 27/438 (6%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
+Q+RL W + L++ G+ L S+ ++P Y M LP+N+C + +F W
Sbjct: 750 LQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQ 809
Query: 61 NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
K IH ++W++++LPK+ GG + + N +LL K W ++Q L+ + ++Y
Sbjct: 810 QKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFS 869
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSSF-----WFSNWNSLSPIGN 174
+ L A+ +R S W SI+ + +L G IG+G +F W + ++ P+ N
Sbjct: 870 NSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPL-N 928
Query: 175 YVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLP-PDVENHINNIHTQFNDNIEDALIWSQ 233
I+V DL++S ++ + +L P DVE + F ED+ W
Sbjct: 929 RRRFINV-DLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFK---EDSFCWLH 984
Query: 234 NKNGTYTTKSGFNWLITS------RVPAIEPILHA-WSWIWRLKVPEKYKFLIWLACQNA 286
+ NG Y+ K+G+ +L + ++P +++ + IW L K + +W A A
Sbjct: 985 SHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGA 1044
Query: 287 VPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYD 346
+P L R + C C E+ET H + +C ++ +W +S + + Y
Sbjct: 1045 IPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYT 1104
Query: 347 WIKLGISGSRSS------IFLAG--LWWVWRHRNLMCLNNETLSLFRLCNNIISAADAAN 398
+ I ++ + F++ LW++W++RN + + L + A
Sbjct: 1105 NMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWF 1164
Query: 399 SAFNGEENPPHSDRLVKW 416
SA +N ++ KW
Sbjct: 1165 SAQTHMQNDEKHLKITKW 1182
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 140 bits (353), Expect = 1e-31
Identities = 105/438 (23%), Positives = 196/438 (43%), Gaps = 27/438 (6%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
+Q+RL W + L++ G+ L S+ ++P Y M LP+N+C + +F W
Sbjct: 771 LQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQ 830
Query: 61 NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
K IH ++W++++LPK+ GG + + N +LL K W ++Q L+ + ++Y
Sbjct: 831 QKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFS 890
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSSF-----WFSNWNSLSPIGN 174
+ L A+ +R S W SI+ + +L G IG+G +F W + ++ P+ N
Sbjct: 891 NSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPL-N 949
Query: 175 YVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLP-PDVENHINNIHTQFNDNIEDALIWSQ 233
I+V DL++S ++ + +L P DVE + F ED+ W
Sbjct: 950 RRRFINV-DLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFK---EDSFCWLH 1005
Query: 234 NKNGTYTTKSGFNWLITS------RVPAIEPILHA-WSWIWRLKVPEKYKFLIWLACQNA 286
+ NG Y+ K+G+ +L + ++P +++ + IW L K + +W A A
Sbjct: 1006 SHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGA 1065
Query: 287 VPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYD 346
+P L R + C C E+ET H + +C ++ +W +S + + Y
Sbjct: 1066 IPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYT 1125
Query: 347 WIKLGISGSRSS------IFLAG--LWWVWRHRNLMCLNNETLSLFRLCNNIISAADAAN 398
+ I ++ + F++ LW++W++RN + + L + A
Sbjct: 1126 NMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWF 1185
Query: 399 SAFNGEENPPHSDRLVKW 416
SA +N ++ KW
Sbjct: 1186 SAQTHMQNDEKHLKITKW 1203
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 139 bits (350), Expect = 2e-31
Identities = 115/482 (23%), Positives = 204/482 (41%), Gaps = 48/482 (9%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT- 59
+Q+ L+ W ++ L++ G+ L S+ ++P Y M LP+ +C + +F W
Sbjct: 724 LQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSME 783
Query: 60 -TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYT 118
+NK IH + KK++LPK++GG + + N +LL K W + S + + ++Y
Sbjct: 784 FSNK-IHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYF 842
Query: 119 GGHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSG-SSSFWFSNW----NSLSPIG 173
+ L A R S TW SI+ + +L G IG+G ++ W W +S P+
Sbjct: 843 MNTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPM- 901
Query: 174 NYVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQ 233
N ++++H + D L+ N ++ DV+ +H + + ED+ W+
Sbjct: 902 NLHSLMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQ---LIMHQRPLISSEDSYCWAG 958
Query: 234 NKNGTYTTKSGFN----------WLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLAC 283
NG YT KSG+ + P++ P+ + +W L+ K K +W A
Sbjct: 959 TNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPL---FDKVWSLETVPKIKVFMWKAL 1015
Query: 284 QNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIW-------QKIGFTSN 336
+ A+ L R + + C C EE ET H + C F++ +W GF ++
Sbjct: 1016 KGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTS 1075
Query: 337 DFVT-TATTYDWIKLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLS-------LFRLCN 388
F + GI ++ LW +W++RN L+ + CN
Sbjct: 1076 IFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECN 1135
Query: 389 NIISAADAANSAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNS 448
I+A + ++ + E+ KWN + N+ + G VLR+S
Sbjct: 1136 LWINAQEKSSGGVSPSEH--------KWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDS 1187
Query: 449 AG 450
G
Sbjct: 1188 MG 1189
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,083,807,934
Number of Sequences: 2540612
Number of extensions: 48424991
Number of successful extensions: 107116
Number of sequences better than 10.0: 497
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 106118
Number of HSP's gapped (non-prelim): 659
length of query: 581
length of database: 863,360,394
effective HSP length: 134
effective length of query: 447
effective length of database: 522,918,386
effective search space: 233744518542
effective search space used: 233744518542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)
Medicago: description of AC135319.4