BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135234.2 - phase: 0 /pseudo
(1380 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44107.1| putative polyprotein [Cicer arietinum] 206 4e-51
gb|AAO45752.1| pol protein [Cucumis melo] 157 2e-36
gb|AAV31169.1| putative polyprotein [Solanum tuberosum] 137 2e-30
gb|AAT66771.1| putative polyprotein [Solanum demissum] 137 3e-30
gb|AAT39954.1| putative integrase [Solanum demissum] 135 1e-29
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 134 2e-29
gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica ... 133 5e-29
gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum] g... 132 6e-29
gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum] 132 6e-29
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi... 130 2e-28
emb|CAB46045.1| retrotransposon like protein [Arabidopsis thalia... 127 3e-27
prf||1510387A retrotransposon del1-46 125 1e-26
emb|CAB80807.1| putative transposon protein [Arabidopsis thalian... 123 5e-26
gb|AAD22158.1| polyprotein [Sorghum bicolor] 122 8e-26
gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-... 122 1e-25
emb|CAE03840.1| OSJNBb0013J13.17 [Oryza sativa (japonica cultiva... 120 2e-25
gb|AAP55130.1| putative gypsy-type retrotransposon polyprotein [... 120 4e-25
ref|NP_910342.1| Similar to 22 kDa kafirin cluster; Ty3-Gypsy ty... 120 4e-25
ref|XP_475847.1| putative polyprotein [Oryza sativa (japonica cu... 119 5e-25
ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultiv... 119 5e-25
>emb|CAC44107.1| putative polyprotein [Cicer arietinum]
Length = 141
Score = 206 bits (524), Expect = 4e-51
Identities = 98/138 (71%), Positives = 116/138 (84%), Gaps = 1/138 (0%)
Query: 1233 RGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
+GDHVFLRVTP TGVGRALKSKKLTPKFIGPYQIS R+G VAYR+ LPP LSN+HDVFHV
Sbjct: 2 QGDHVFLRVTPTTGVGRALKSKKLTPKFIGPYQISARIGPVAYRIALPPILSNIHDVFHV 61
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
SQLRKY+ DPSHVI +Q++DNL+ E P+RIDD K+K LR K++ LV+V+W TG+
Sbjct: 62 SQLRKYLADPSHVIEPDTIQLKDNLSFEVPPVRIDDMKIKRLRTKDVSLVKVIWNPITGD 121
Query: 1353 SLTWELESKMRESYPELF 1370
+ TWELESKMRE +PELF
Sbjct: 122 A-TWELESKMREQHPELF 138
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 157 bits (397), Expect = 2e-36
Identities = 75/137 (54%), Positives = 97/137 (70%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD VFL+V PM GV R + KL+P+F+GP++I ER+G VAYR+ LPP LS +HDVFHVS
Sbjct: 785 GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVS 844
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGES 1353
LRKYVPDPSHV+ +++ +NL+ P+ + R VK+LR K+IPLV+V+W E
Sbjct: 845 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEE 904
Query: 1354 LTWELESKMRESYPELF 1370
TWE E MR YPELF
Sbjct: 905 ATWEREDDMRSRYPELF 921
>gb|AAV31169.1| putative polyprotein [Solanum tuberosum]
Length = 394
Score = 137 bits (346), Expect = 2e-30
Identities = 70/139 (50%), Positives = 91/139 (65%)
Query: 1232 SRGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFH 1291
S GD VFLRV+PM GV R + KL+P++IGP++I VG VAY + LPP S +H VFH
Sbjct: 250 SVGDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFEILRTVGEVAYELALPPVFSAIHPVFH 309
Query: 1292 VSQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATG 1351
VS LR+YVPD SHV+ V++ D LT P+ I R V+ LR + IP+V+V W +
Sbjct: 310 VSMLRRYVPDESHVLQYDAVELDDRLTFVEEPVAILARDVRRLRSRAIPVVKVRWRHCSV 369
Query: 1352 ESLTWELESKMRESYPELF 1370
E TWE E +MRE +P LF
Sbjct: 370 EEATWETEQEMREQFPGLF 388
>gb|AAT66771.1| putative polyprotein [Solanum demissum]
Length = 1769
Score = 137 bits (345), Expect = 3e-30
Identities = 70/139 (50%), Positives = 90/139 (64%)
Query: 1232 SRGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFH 1291
S GD VFLRV+PM GV R + KL+P++IGP++I VG VAY + LPP S +H VFH
Sbjct: 1625 SVGDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFEILRTVGEVAYELALPPVFSAIHPVFH 1684
Query: 1292 VSQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATG 1351
VS LR+YVPD SHV+ V++ D LT P+ I R V+ LR + IP+V+V W
Sbjct: 1685 VSMLRRYVPDESHVLQYDAVELDDRLTFVEEPVAILARDVRRLRSRAIPVVKVRWRHRPV 1744
Query: 1352 ESLTWELESKMRESYPELF 1370
E TWE E +MRE +P LF
Sbjct: 1745 EEATWETEQEMREQFPSLF 1763
>gb|AAT39954.1| putative integrase [Solanum demissum]
Length = 1609
Score = 135 bits (340), Expect = 1e-29
Identities = 69/139 (49%), Positives = 88/139 (62%)
Query: 1232 SRGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFH 1291
S GD VF RV+PM GV R + KL+P++IGP++I VG VAY + LPP S +H VFH
Sbjct: 1324 SVGDRVFFRVSPMKGVMRFGRRDKLSPRYIGPFEILRTVGEVAYELALPPAFSAIHPVFH 1383
Query: 1292 VSQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATG 1351
V LR+YVPD SHV+ V++ D LT P+ I R VK LR + IP+V+V W
Sbjct: 1384 VPMLRRYVPDESHVLQYDAVELDDRLTFVEEPIAILARDVKRLRSRAIPVVKVHWRHRPV 1443
Query: 1352 ESLTWELESKMRESYPELF 1370
E TWE E +MRE +P LF
Sbjct: 1444 EEATWETEQEMREQFPVLF 1462
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 134 bits (338), Expect = 2e-29
Identities = 64/139 (46%), Positives = 96/139 (69%)
Query: 1235 DHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQ 1294
D V+L+V+PM GV R K KL+P++IGPY+I +RVG+VAY + LP L+ +H VFH+S
Sbjct: 1460 DWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIVQRVGSVAYELELPQELAAVHPVFHISM 1519
Query: 1295 LRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESL 1354
L+K + DPS ++ V+++DNL+ E +P++I DR+V+ LR K++ V+V+W E
Sbjct: 1520 LKKCIGDPSLILPTESVKIKDNLSYEEVPVQILDRQVRRLRTKDVASVKVLWRNQFVEEA 1579
Query: 1355 TWELESKMRESYPELFP*G 1373
TWE E M++ YP LF G
Sbjct: 1580 TWEAEEDMKKRYPHLFESG 1598
>gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
Length = 552
Score = 133 bits (334), Expect = 5e-29
Identities = 63/137 (45%), Positives = 91/137 (65%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V LRV+P G+ R + KL+P++IGP+ I+ RVG++AYR+ LP ++ +HDVFHVS
Sbjct: 409 GDQVLLRVSPTKGIVRFGTTGKLSPRYIGPFVITARVGSLAYRLQLPESMNGVHDVFHVS 468
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGES 1353
LRKY+ DP H I + V +LT+E P+RI D + +R + I V+V+W +
Sbjct: 469 MLRKYLRDPEHKIDLEPIMVEQDLTIECRPVRIFDWSERVMRRRTIKYVKVLWTNQSERE 528
Query: 1354 LTWELESKMRESYPELF 1370
TWELE +M++ YPELF
Sbjct: 529 ATWELEEEMKKKYPELF 545
>gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum]
gi|47825020|gb|AAT38791.1| putative gag-pol polyprotein
[Solanum demissum]
Length = 1351
Score = 132 bits (333), Expect = 6e-29
Identities = 62/139 (44%), Positives = 95/139 (67%)
Query: 1235 DHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQ 1294
D V+L+V+PM GV R K KL+P++IGPY+I++R+G VAY + LP L+ +H VFH+S
Sbjct: 1209 DWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELAAVHPVFHISM 1268
Query: 1295 LRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESL 1354
L+K + DPS ++ +++ DNL+ E +P++I DR+V+ LR K++ V+V+W E
Sbjct: 1269 LKKCIGDPSLILPTESIKINDNLSYEEVPVQILDRQVRRLRTKDVASVKVLWRDQFVEEA 1328
Query: 1355 TWELESKMRESYPELFP*G 1373
TWE E M++ YP LF G
Sbjct: 1329 TWEAEEDMKKKYPYLFESG 1347
>gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1351
Score = 132 bits (333), Expect = 6e-29
Identities = 62/139 (44%), Positives = 95/139 (67%)
Query: 1235 DHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQ 1294
D V+L+V+PM GV R K KL+P++IGPY+I++R+G VAY + LP L+ +H VFH+S
Sbjct: 1209 DWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELAAVHPVFHISM 1268
Query: 1295 LRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESL 1354
L+K + DPS ++ +++ DNL+ E +P++I DR+V+ LR K++ V+V+W E
Sbjct: 1269 LKKCIGDPSLILPTESIKINDNLSYEEVPVQILDRQVRRLRTKDVASVKVLWRDQFVEEA 1328
Query: 1355 TWELESKMRESYPELFP*G 1373
TWE E M++ YP LF G
Sbjct: 1329 TWEAEEDMKKKYPYLFESG 1347
>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411368|pir||G84493 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1611
Score = 130 bits (328), Expect = 2e-28
Identities = 62/137 (45%), Positives = 88/137 (63%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L+ G GR KKL+P+++GPY++ ERVG VAY++ LPP L+ H+VFHVS
Sbjct: 1446 GDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVS 1505
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGES 1353
QLRK + D + +++N+TVE P+RI DR K RGK L++V+W E
Sbjct: 1506 QLRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKGTRGKARDLLKVLWNCRGREE 1565
Query: 1354 LTWELESKMRESYPELF 1370
TWE E+KM+ ++PE F
Sbjct: 1566 YTWETENKMKANFPEWF 1582
>emb|CAB46045.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268441|emb|CAB80961.1| retrotransposon like protein
[Arabidopsis thaliana] gi|25407549|pir||F85188
retrotransposon like protein [imported] - Arabidopsis
thaliana
Length = 687
Score = 127 bits (319), Expect = 3e-27
Identities = 59/137 (43%), Positives = 87/137 (63%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L+ G GR KKL P+++GPY++ ERVG VAY++ LPP L H+VFHVS
Sbjct: 530 GDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVS 589
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGES 1353
QLRK + + + +++N+TVE P+RI D+ K RGK + L++++W E
Sbjct: 590 QLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCGGREE 649
Query: 1354 LTWELESKMRESYPELF 1370
TWE E+KM+ ++PE F
Sbjct: 650 YTWETETKMKANFPEWF 666
>prf||1510387A retrotransposon del1-46
Length = 1443
Score = 125 bits (314), Expect = 1e-26
Identities = 60/139 (43%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
Query: 1232 SRGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFH 1291
S G+H+FL V+P G + KL+P++ GP++I E + VAYR+ LPP LS++H+VFH
Sbjct: 1303 SVGNHIFLEVSPRKGTSYFVFKGKLSPRYTGPFEILEIIWPVAYRLALPPMLSSIHNVFH 1362
Query: 1292 VSQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATG 1351
+S LRKY PDPSH++ D+++ +++ E P+++ + K LR K I +V+V+W +
Sbjct: 1363 ISMLRKYEPDPSHILDWEDLRLNPDISYEEKPVQVLASESKVLRNKIILMVKVLWQHHSE 1422
Query: 1352 ESLTWELESKMRESYPELF 1370
E TWELE+ M+E +P LF
Sbjct: 1423 EEATWELEADMQE-FPNLF 1440
>emb|CAB80807.1| putative transposon protein [Arabidopsis thaliana]
gi|3319363|gb|AAC26251.1| contains similarity to reverse
transcriptase (Pfam: rvt.hmm, score: 33.26) [Arabidopsis
thaliana] gi|7487790|pir||T01862 hypothetical protein
T7M24.4 - Arabidopsis thaliana
Length = 973
Score = 123 bits (308), Expect = 5e-26
Identities = 58/136 (42%), Positives = 86/136 (62%)
Query: 1235 DHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQ 1294
D V+L+ G GR KKL+P+++GPY++ ERVG VAY++ LPP L+ H+VFHVSQ
Sbjct: 809 DLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQ 868
Query: 1295 LRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESL 1354
LRK + + + +++N+TVE P++I DR K RGK L++V+W E
Sbjct: 869 LRKCLSNQEESVEDVPPGLKENMTVEAWPVQIMDRMTKGTRGKSRDLLKVLWNCGGREQY 928
Query: 1355 TWELESKMRESYPELF 1370
TWE E+KM+ ++ E F
Sbjct: 929 TWETENKMKANFSEWF 944
>gb|AAD22158.1| polyprotein [Sorghum bicolor]
Length = 924
Score = 122 bits (306), Expect = 8e-26
Identities = 58/137 (42%), Positives = 84/137 (60%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GDHV+L+V+P+ G R KL P+F+GPY+IS+R+G +AYR+ LP +S +H VFHVS
Sbjct: 782 GDHVYLKVSPLRGTFRFHVKGKLAPRFVGPYRISKRIGKLAYRLELPEEMSGVHPVFHVS 841
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGES 1353
QLRK + P + + +++ L P+RI DR K R P+ +V+W T
Sbjct: 842 QLRKCLKLPEEEVPIETLDLQETLEYREYPVRILDRATKETRSSTFPMCKVLWSNHTERE 901
Query: 1354 LTWELESKMRESYPELF 1370
TWE ES+++ YP LF
Sbjct: 902 ATWEKESELQLRYPYLF 918
>gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1761
Score = 122 bits (305), Expect = 1e-25
Identities = 57/139 (41%), Positives = 89/139 (64%)
Query: 1233 RGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
+GDHV+LRV+P+ G+ R S KL P++IGPY I+ R G VAY++ LP L+++H+VFHV
Sbjct: 1623 KGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHV 1682
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
SQL+K + P + G++++ NLT + P+++ + V+ R K I +V W + +
Sbjct: 1683 SQLKKCLRVPEEQVPLGNIELEKNLTYKERPIKVLEEAVRQTRRKTIKFYKVQWSNHSED 1742
Query: 1353 SLTWELESKMRESYPELFP 1371
TWE E +R +PEL P
Sbjct: 1743 EATWEREDLLRAEFPELLP 1761
>emb|CAE03840.1| OSJNBb0013J13.17 [Oryza sativa (japonica cultivar-group)]
gi|50930413|ref|XP_474734.1| OSJNBb0013J13.17 [Oryza
sativa (japonica cultivar-group)]
Length = 864
Score = 120 bits (302), Expect = 2e-25
Identities = 57/139 (41%), Positives = 88/139 (63%)
Query: 1233 RGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
+GDHV+LRV+P+ G+ R S KL P++IGPY I+ R G VAY++ LP L+++H+VFHV
Sbjct: 726 KGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHV 785
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
SQL+K + P + G++++ NLT + P+++ + R K I +V W + +
Sbjct: 786 SQLKKCLRVPEEQVPLGNIELEKNLTYKERPIKVLEEAEHQTRRKTIKFYKVQWSNHSED 845
Query: 1353 SLTWELESKMRESYPELFP 1371
TWE E +R +PELFP
Sbjct: 846 EATWEREDLLRAEFPELFP 864
>gb|AAP55130.1| putative gypsy-type retrotransposon polyprotein [Oryza sativa
(japonica cultivar-group)] gi|37537082|ref|NP_922843.1|
putative gypsy-type retrotransposon polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|12643059|gb|AAK00448.1| putative gypsy-type
retrotransposon polyprotein [Oryza sativa]
Length = 762
Score = 120 bits (300), Expect = 4e-25
Identities = 56/139 (40%), Positives = 87/139 (62%)
Query: 1233 RGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
+GDHV+LRV+P+ G+ R S KL P++IGPY I+ R G VAY + LP L+++H+VFHV
Sbjct: 624 KGDHVYLRVSPLRGIRRFGMSGKLAPRYIGPYLITARRGEVAYHLELPEGLADVHNVFHV 683
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
SQL+K + P + G++++ NLT + P+++ + + R K I +V W + +
Sbjct: 684 SQLKKCLRVPEEQVPLGNIELEKNLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSED 743
Query: 1353 SLTWELESKMRESYPELFP 1371
TWE E +R +PEL P
Sbjct: 744 EATWEQEDLLRAEFPELLP 762
>ref|NP_910342.1| Similar to 22 kDa kafirin cluster; Ty3-Gypsy type (AF061282) [Oryza
sativa (japonica cultivar-group)]
Length = 607
Score = 120 bits (300), Expect = 4e-25
Identities = 56/139 (40%), Positives = 88/139 (63%)
Query: 1233 RGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
+GDHV+LRV+P+ G+ R S KL P++IGPY I+ R G VAY++ LP L+++H+VFHV
Sbjct: 469 KGDHVYLRVSPLRGMRRFGMSSKLAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHV 528
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
SQL+K + P + G++++ NLT + P+++ + + R K I +V W + +
Sbjct: 529 SQLKKCLRVPEEQVPLGNIELERNLTYKERPIKVLEETERQTRRKTIKFYKVQWSNHSED 588
Query: 1353 SLTWELESKMRESYPELFP 1371
TWE E +R +PEL P
Sbjct: 589 EATWEREDLLRAEFPELLP 607
>ref|XP_475847.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|47900493|gb|AAT39250.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1688
Score = 119 bits (299), Expect = 5e-25
Identities = 56/139 (40%), Positives = 88/139 (63%)
Query: 1233 RGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
+GDHV+LRV+P+ G+ R S KL P++IGPY I+ R G VAY++ LP L+++H+VFHV
Sbjct: 1550 KGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHV 1609
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
SQL+K + P + G++++ NLT + P+++ + + R K I +V W + +
Sbjct: 1610 SQLKKCLRVPEEQVPLGNIELEKNLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSED 1669
Query: 1353 SLTWELESKMRESYPELFP 1371
TWE E +R +PEL P
Sbjct: 1670 EATWEREDLLRAKFPELLP 1688
>ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultivar-group)]
gi|32489661|emb|CAE04240.1| OSJNBa0089N06.1 [Oryza sativa
(japonica cultivar-group)] gi|57834090|emb|CAE04759.2|
OSJNBb0060E08.22 [Oryza sativa (japonica cultivar-group)]
Length = 1851
Score = 119 bits (299), Expect = 5e-25
Identities = 56/139 (40%), Positives = 88/139 (63%)
Query: 1233 RGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
+GDHV+LRV+P+ G+ R S KL P++IGPY I+ R G VAY++ LP L+++H+VFHV
Sbjct: 1713 KGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHV 1772
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
SQL+K + P + G++++ NLT + P+++ + + R K I +V W + +
Sbjct: 1773 SQLKKCLRVPEEQVPLGNIELEKNLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSED 1832
Query: 1353 SLTWELESKMRESYPELFP 1371
TWE E +R +PEL P
Sbjct: 1833 EATWEREDLLRAEFPELLP 1851
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.369 0.167 0.626
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,753,114,433
Number of Sequences: 2540612
Number of extensions: 58919752
Number of successful extensions: 262661
Number of sequences better than 10.0: 617
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 261578
Number of HSP's gapped (non-prelim): 1021
length of query: 1380
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1239
effective length of database: 505,134,102
effective search space: 625861152378
effective search space used: 625861152378
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 82 (36.2 bits)
Medicago: description of AC135234.2