BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135162.7 + phase: 0 /pseudo
(2175 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 1718 0.0
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 1024 0.0
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 887 0.0
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 764 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 743 0.0
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 740 0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 696 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 694 0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 694 0.0
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 694 0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 694 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 692 0.0
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 692 0.0
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 691 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 691 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 691 0.0
ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cu... 690 0.0
gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultiva... 684 0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 681 0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 681 0.0
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 1718 bits (4449), Expect = 0.0
Identities = 799/1084 (73%), Positives = 946/1084 (86%), Gaps = 8/1084 (0%)
Query: 1093 LNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK 1152
+ RR LREY +IFAWSY+DMPGLD IV HR+P + CP V+QKLRRT PDMA KIK
Sbjct: 1185 VKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMATKIK 1244
Query: 1153 NEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVL 1212
EVQKQ DAGFL YP W+ANIVPVPKKDGKVRMCVD+RDLN+ASPKD+FPLPHIDVL
Sbjct: 1245 EEVQKQWDAGFLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVL 1304
Query: 1213 VDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRG 1272
VDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITPWGTFCYKVMPFGL NAGATYQR
Sbjct: 1305 VDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFCYKVMPFGLKNAGATYQRA 1364
Query: 1273 MTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSG 1332
MTTLFHDM+HKE+EVYVDDMI KS EE+H+ L K+F+RLRK+KLRLNPNKCTFGVRSG
Sbjct: 1365 MTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRSG 1424
Query: 1333 KLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFK 1392
KLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC PIFK
Sbjct: 1425 KLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCEPIFK 1484
Query: 1393 LLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDE 1452
LLRKNQ I WND+CQ+AFD IK YL +PPIL+PPV GRPLIMYL+V + SMGCVLG+ DE
Sbjct: 1485 LLRKNQAIKWNDDCQKAFDKIKEYLQKPPILIPPVPGRPLIMYLSVTENSMGCVLGRHDE 1544
Query: 1453 TGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYI 1512
+G+KEHAIYYLSKKFTDCETRY++LEKTCCALAWA +RLR Y++NHTT LIS+MDP+KYI
Sbjct: 1545 SGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYI 1604
Query: 1513 FEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIM 1572
FEK A+TG++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPDE+IM
Sbjct: 1605 FEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIM 1664
Query: 1573 YLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECT 1632
YLK KDC+EPL+ EGPDPD KW L+FDGAVN G G+GAV+++P+G H+PF+ R+ F+ T
Sbjct: 1665 YLKMKDCKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLTFDVT 1724
Query: 1633 NNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLT 1692
NN AEYEACI GIEEAID+RIK LDI+GDSAL++NQ+ G+W T+ +LIPYRDY RR+LT
Sbjct: 1725 NNEAEYEACIMGIEEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILT 1784
Query: 1693 YFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQA 1752
+F KV+L+H+PRDENQMADALATLSSM +VN WN VP + V RLERP++VFA V
Sbjct: 1785 FFKKVKLYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESV---- 1840
Query: 1753 GENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLD-GNILYKRNYDMVLL 1811
V+D +PWYYDIK FL ++EYP GASK DKKTLRRLAG F L+ ++LYKRN+DMVLL
Sbjct: 1841 ---VIDEKPWYYDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFDMVLL 1897
Query: 1812 RCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIY 1871
RC+D EA+ LM +VH+G+FGTHA GH M++KLLRAGYYWM ME DC+++ARKCHKCQIY
Sbjct: 1898 RCMDRPEADMLMQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHKCQIY 1957
Query: 1872 ADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTN 1931
AD++HVPP LNVM+SPWPF+MWGIDMIG+IEP ASNGHRFILVAIDYFTKWVEAASY N
Sbjct: 1958 ADRVHVPPSPLNVMNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAASYAN 2017
Query: 1932 VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNG 1991
+TKQVV +FIK IICRYGVP +IITDNG+NLNN +++ LC++FKIEHHNSSPYRP+MNG
Sbjct: 2018 ITKQVVTRFIKKEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRPKMNG 2077
Query: 1992 AVEAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2051
AVEAANKNIK+IV+KMV TYKDWHEMLP+ALHGYRT+VR+STGATP+SLVYGMEAVLP+E
Sbjct: 2078 AVEAANKNIKKIVRKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPVE 2137
Query: 2052 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPRE 2111
VEIPSLRV+++ KL EAEW ++R+++L+LIEE+R+ + GQ YQ RMK AFD+KV PR
Sbjct: 2138 VEIPSLRVLLDVKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKVRPRS 2197
Query: 2112 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNADIV 2171
+++G+LVLKR + D RGKWTPNYEGPYVVKK FSGGAL+LT MDG + P+PVN+D+V
Sbjct: 2198 YQIGDLVLKRILPPGTDNRGKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVNSDVV 2257
Query: 2172 KKYF 2175
KKYF
Sbjct: 2258 KKYF 2261
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 1024 bits (2647), Expect = 0.0
Identities = 479/627 (76%), Positives = 552/627 (87%)
Query: 1093 LNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK 1152
+ RR LREY +IFAWSY+DMPGLD IV HR+P + CP V+QKLRRT PDMA KIK
Sbjct: 1187 VKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMATKIK 1246
Query: 1153 NEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVL 1212
EVQKQ DAGFL YP WVANIVPVPKKDGKVRMCVD+RDLN+ASPKD+FPLPHIDVL
Sbjct: 1247 EEVQKQWDAGFLAVTSYPPWVANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVL 1306
Query: 1213 VDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRG 1272
VDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITPWGTF YKVMPFGL NAGATYQR
Sbjct: 1307 VDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFYYKVMPFGLKNAGATYQRA 1366
Query: 1273 MTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSG 1332
MTTLFHDM+HKE+EVYVDDMI KS EE+H+ L K+F+RLRK+KLRLNPNKCTFGVRSG
Sbjct: 1367 MTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRSG 1426
Query: 1333 KLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFK 1392
KLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC PIFK
Sbjct: 1427 KLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCEPIFK 1486
Query: 1393 LLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDE 1452
LLRKNQ I WND+CQ+AFD IK YL +PPIL PPV GRPLIMYL+V + SMGCVLGQ DE
Sbjct: 1487 LLRKNQAIKWNDDCQKAFDKIKEYLQKPPILTPPVPGRPLIMYLSVTENSMGCVLGQHDE 1546
Query: 1453 TGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYI 1512
+G+KEHAIYYLSKKFTDCETRY++LEKTCCALAWA +RLR Y++NHTT LIS+MDP+KYI
Sbjct: 1547 SGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYI 1606
Query: 1513 FEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIM 1572
FEK A+TG++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPDE+IM
Sbjct: 1607 FEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIM 1666
Query: 1573 YLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECT 1632
YLK KDCEEPL+ EGPDPD KW L+FDGAVN G G+GAV+++P+G HIPF+ R+ F+ T
Sbjct: 1667 YLKVKDCEEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHIPFSARLTFDVT 1726
Query: 1633 NNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLT 1692
NN AEYEACI GIEEAID+RIK LDIYGDSAL++NQ+ G+W T+ +LIPYRDY RR+LT
Sbjct: 1727 NNEAEYEACIMGIEEAIDLRIKTLDIYGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILT 1786
Query: 1693 YFTKVELHHIPRDENQMADALATLSSM 1719
+F KV L+H+PRDENQMADALATLSSM
Sbjct: 1787 FFKKVRLYHVPRDENQMADALATLSSM 1813
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 887 bits (2291), Expect = 0.0
Identities = 468/1089 (42%), Positives = 660/1089 (59%), Gaps = 37/1089 (3%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L E+ D FAW+Y++MPGLD + H++ P+ PV+Q RR P+ ++ EV + I+
Sbjct: 1810 LMEFRDCFAWTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLIN 1869
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
GF+ ++YP W+ANIVPV KK+G+VR+CVDFRDLN+A PKD+FPLP +++VD+T
Sbjct: 1870 VGFIKEIQYPRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTG-- 1927
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDM 1280
SGYNQIKM D T+F TP G F Y VMPFGL NAGATYQR M + D+
Sbjct: 1928 ----YGALSGYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLDDL 1983
Query: 1281 IHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVS 1340
IH VE YVDDM+VK+ D E H E L +FERLR+++L++NP KC F V+SG LGF++
Sbjct: 1984 IHHSVECYVDDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIR 2043
Query: 1341 QKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPI 1400
+GIE++P K++AI MP PQ K +R G+L YI RFIS+++ P KL++K P
Sbjct: 2044 HRGIEIEPKKIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPF 2103
Query: 1401 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAI 1460
VW++ECQ FDSIK YLL PP+L PV+GRPLI+Y+A S+G +L Q ++ G KE A
Sbjct: 2104 VWDEECQNGFDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEG-KEVAC 2162
Query: 1461 YYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTG 1520
YYLS+ E Y+ +EK C AL +A K+LRHY++ H LI+R DPI+Y+ + +TG
Sbjct: 2163 YYLSRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLTG 2222
Query: 1521 KIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCE 1580
++ +W +L+ EYDI F QKAIKG LA+ LA P+ D P+ + PDEEI + ++
Sbjct: 2223 RLGKWALLMMEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEIFTAELQE-- 2280
Query: 1581 EPLINEGPDPDSKWGLVFDGA----VNAYG-----KGIGAVIVSPQGHHIPFTTRIL-FE 1630
+W L FDGA +N G G G V +PQG I + +L E
Sbjct: 2281 ------------QWELYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEE 2328
Query: 1631 CTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRL 1690
C+NN AEYEA IFG+ A+ M ++ L +GDS LII QI +E L+PY ARRL
Sbjct: 2329 CSNNEAEYEALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELVPYYTVARRL 2388
Query: 1691 LTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVID 1750
+ F +E+ H+PR +N ADALA L++ N ++ +R P+ + I + ++
Sbjct: 2389 MDKFEHIEVIHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAVLELIPEEVN 2448
Query: 1751 QAGENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGNILYKRNYDM-V 1809
N + W + P +++ L+R ++ +LYKR+Y V
Sbjct: 2449 IIITNSAEEEDWRQPFLDYFKHGSLP--EDPVERRQLQRRLPSYIYKAGVLYKRSYGQEV 2506
Query: 1810 LLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQ 1869
LLRCVD EA +++ +VH G G H +G M + GYYW + DC + A+ CH CQ
Sbjct: 2507 LLRCVDRSEANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQ 2566
Query: 1870 IYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1929
I+ + H PP L+ WPF WGID+IG I P +S GHRFIL A DYF+KW EA
Sbjct: 2567 IHDNFKHQPPAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTATDYFSKWAEAVPL 2626
Query: 1930 TNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQM 1989
V V F++ +II R+GVP +I +DN + + E++KI+ + S+ Y PQ
Sbjct: 2627 REVKSSDVINFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQA 2686
Query: 1990 NGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVL 2048
NG EA NK + +I++K V + +DWH+ L AL YR TVR+ T ATP+SLVYG EAVL
Sbjct: 2687 NGMAEAFNKTLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVL 2746
Query: 2049 PLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVH 2108
PLE+++PSLRV + +L++ E + R+ +L+ +EE+R+ A+ + Y+ M A+DK V
Sbjct: 2747 PLEIQLPSLRVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQNMVRAYDKLVK 2806
Query: 2109 PREFKVGE--LVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPV 2166
R F+ GE LVL+R I +GK+ P +EGPYV+++A+ GGA L G + P+
Sbjct: 2807 QRVFRKGELVLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGSQPMPPI 2866
Query: 2167 NADIVKKYF 2175
N +KKYF
Sbjct: 2867 NGRFLKKYF 2875
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 764 bits (1972), Expect = 0.0
Identities = 417/1063 (39%), Positives = 615/1063 (57%), Gaps = 39/1063 (3%)
Query: 1115 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVA 1174
M G+ P I HR+ PVRQ++RR HPD I+NE+ K ++AGF+ V YP+W+A
Sbjct: 1 MKGIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLA 60
Query: 1175 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1234
N+V VPKK+GK R+CVD+ +LN A PKD+FPLP ID +VD+T+ + SF+D FSGY+QI
Sbjct: 61 NVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120
Query: 1235 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1294
MSP+D EK +FITP +CYKVMPFGL NAGATYQR MT +F +I VEVY+DD++V
Sbjct: 121 PMSPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVV 180
Query: 1295 KSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1354
KS EQH+ +L ++F LR+Y ++LNP+KC FGV + K LGF+VSQ+GIEV PD+V+A+
Sbjct: 181 KSKTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAV 240
Query: 1355 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 1414
E P P+ +K+++ G+L + RFI+ P F +RK W D CQ A + IK
Sbjct: 241 METPPPRNKKELQRLTGKLVALGRFIARFIDELRPFFLAIRKAGTHGWTDNCQNALERIK 300
Query: 1415 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1474
+YL++PPIL P+ L MYLAV + ++ VL + + K++ IYY+S+ D ETRY
Sbjct: 301 HYLMQPPILSSPIPKEKLYMYLAVSEWAISAVL-FRCPSPKEQKPIYYVSRALADVETRY 359
Query: 1475 TMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDI 1534
+ +E AL A ++LR Y H ++ P++ I K +TG++ +W + LSE+ I
Sbjct: 360 SKMELISLALRSAAQKLRPYFQAHPV-IVLTDQPLRNILHKPDLTGRMLQWAIELSEFGI 418
Query: 1535 VFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKW 1594
F+ + ++KG ++AD + +E+ +P +EG W
Sbjct: 419 EFQPRLSMKGQVMADFV----------LEYS--------------RKPGQHEGSRKKEWW 454
Query: 1595 GLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIK 1654
L DGA + G G+G ++ SP G H+ R+ F +NN AEYEA + G++ A+ + +
Sbjct: 455 TLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVS 514
Query: 1655 HLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALA 1714
L I+ DS L++ ++ E+E A + Y R L FT+ + I R +N+ ADALA
Sbjct: 515 KLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTIEKIKRADNRRADALA 574
Query: 1715 TLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSRE 1774
+++ + +P I VQ S + + D + W DI +++ +
Sbjct: 575 GIAASLSIKEAILLP-IHVQTNPSVSEI----SICSTTEAPQADDQEWMNDITEYIRTGT 629
Query: 1775 YPPGASKQDKKTLRRLAGRFLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTH 1834
PG KQ K +R A RF L G LYKR++ LRC+ EA+ ++ ++H+G +G H
Sbjct: 630 L-PGDPKQAHK-VRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEAQYVLAELHEGIYGNH 687
Query: 1835 ATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMW 1894
+ G +++ + GYYW M+ + + ++C KCQ YA H+P L +S PWPF+ W
Sbjct: 688 SGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQW 747
Query: 1895 GIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSK 1954
G+D++ R P A +F+LVA DYF+KWVEA +Y + + V KF+ NIICR+G+P
Sbjct: 748 GMDIV-RPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQT 806
Query: 1955 IITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK-D 2013
II DNG ++ + C E I + S+P PQ NG EA NK + ++K + K
Sbjct: 807 IIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGK 866
Query: 2014 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 2073
W E LP L YRTT TG TPF+L YGM+AV+P+E+ +P++ AK S+A
Sbjct: 867 WVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWT-NAAKQSDANMQLG 925
Query: 2074 RYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPD-PRGK 2132
R L+ +E R A R YQ R +++KV PR K G LVL++ + GK
Sbjct: 926 R--NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGK 983
Query: 2133 WTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNADIVKKYF 2175
+ N+EGPY+V KA GA L +DG L P N +K+Y+
Sbjct: 984 FQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 743 bits (1917), Expect = 0.0
Identities = 423/1086 (38%), Positives = 612/1086 (55%), Gaps = 49/1086 (4%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L+ FAWS EDM G+DP I H + P PV+QK R+ P+ A + EV+K +
Sbjct: 790 LKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLK 849
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
AG ++ V+YPEW+AN V V KK+GK R+CVD+ DLNKA PKD++PLPHID LV+ T+ +
Sbjct: 850 AGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNG 909
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDM 1280
+ SFMD FSGYNQI M +D+EKTSF+T GT+CYKVM FGL NAGATYQR + + D
Sbjct: 910 LLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQ 969
Query: 1281 IHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVS 1340
I + VEVY+DDM+VKS E HVE+L+K F+ L Y ++LNP KCTFGV SG+ LG++V+
Sbjct: 970 IGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVT 1029
Query: 1341 QKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPI 1400
++GIE +P ++RAI E+P+P+ ++V+ GR+ ++RFIS T C P + LL++
Sbjct: 1030 KRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQF 1089
Query: 1401 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAI 1460
W+ + +EAF+ +K+YL PPILV P G L +Y+AV D ++ VL ++D ++ I
Sbjct: 1090 DWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDR--GEQRPI 1147
Query: 1461 YYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTG 1520
+Y SK + ETRY ++EK A+ + ++LR Y +HT +++ P++ + +G
Sbjct: 1148 FYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTD-QPLRVALHSPSQSG 1206
Query: 1521 KIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCE 1580
++ +W + LSEYDI F+ + A+K +LAD L PL + EE
Sbjct: 1207 RMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE---------- 1256
Query: 1581 EPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMAEYEA 1640
W L DG+ +A G GIG +VSP + + R+ F TNN+AEYE
Sbjct: 1257 -------------WSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEV 1303
Query: 1641 CIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTKVELH 1700
I G+ A M+I + + DS LI Q+ GE+E + + Y + + F +L
Sbjct: 1304 LIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLS 1363
Query: 1701 HIPRDENQMADALATLSSMFRVNHWNDV-PLIKVQRLERPS-----HVFAIGDVIDQAGE 1754
IPR +N ADALA L+ + +D+ +I V+ +++PS V + +
Sbjct: 1364 KIPRGDNAPADALAALA----LTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNAP 1419
Query: 1755 NVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRL---AGRFLLDGNILYKRNYDMVLL 1811
+ D W +I+ +L G DK T RRL A ++ L L K + +L
Sbjct: 1420 DPADPTDWRVEIRDYL-----SDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAML 1474
Query: 1812 RCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIY 1871
C+ E ++M + H+G G H+ G ++ KL + G+YW M DC KC +CQ +
Sbjct: 1475 NCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRH 1534
Query: 1872 ADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTN 1931
A IH P L +P+PF W +D++G + AS RFILV DYFTKWVEA SY
Sbjct: 1535 APTIHQPTELLRAGVAPYPFMRWAMDIVGPM--PASRQKRFILVMTDYFTKWVEAESYAT 1592
Query: 1932 VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNG 1991
+ V F+ IICR+G+P +IITDNG+ + + C +KI + S+P PQ NG
Sbjct: 1593 IRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNG 1652
Query: 1992 AVEAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPL 2050
EA NK I ++K + K W + L L YRTT RS+T TPF+ YGMEA+ P
Sbjct: 1653 QAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPA 1712
Query: 2051 EVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPR 2110
EV SLR M K E + D+L+ +EE R A+ R Q+YQ +++KVH R
Sbjct: 1713 EVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNR 1771
Query: 2111 EFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNAD 2169
F VG+LVL++ + GK N+EG Y V K G L M G +P N+
Sbjct: 1772 HFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSM 1831
Query: 2170 IVKKYF 2175
+K+Y+
Sbjct: 1832 HLKRYY 1837
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 740 bits (1910), Expect = 0.0
Identities = 411/1082 (37%), Positives = 619/1082 (56%), Gaps = 65/1082 (6%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L+E+ D F W Y +MPG IVEHR+P KP P +Q RR DM +K E+++ D
Sbjct: 550 LKEFRDCFTWEYYEMPGHSRSIVEHRLPLKPGVRPHQQLPRRCKADMLEPVKAEIKRLYD 609
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
AGF+ Y EWV++IVPV KK+GKVR+C+DFR LNKA+PKD +P+ D LVD + K
Sbjct: 610 AGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRYLNKATPKDEYPMLVADQLVDAASGHK 669
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPW--GTFCYKVMPFGLINAGATYQRGMTTLFH 1278
+ SFMDG +GYNQI M+ ED KT+F P G F + V+ F L +AGATYQR M ++H
Sbjct: 670 ILSFMDGNAGYNQIFMAEEDIHKTTFRCPGAIGLFEWVVITFVLKSAGATYQRAMNYIYH 729
Query: 1279 DMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFI 1338
D+I VEVY+DD++VKS + E H+ L K+FER RKY L++NP KC FGV +G+ LGF+
Sbjct: 730 DLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRKYGLKMNPTKCAFGVSAGQFLGFL 789
Query: 1339 VSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLR--K 1396
V ++GIEV + AI+++ P+ + +++ +G++N++ RFIS ++ P LLR
Sbjct: 790 VHERGIEVTQRSINAIKKIKPPEDKTELQEMIGKINFVRRFISILSGKLEPFTPLLRLKA 849
Query: 1397 NQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKK 1456
+Q W E Q+A D+IK YL PP+L+PP +G P +YL+ D+S+ VL Q+ E +K
Sbjct: 850 DQQFAWGAEQQKALDNIKEYLSSPPVLIPPQKGIPFRLYLSAGDKSISSVLIQELE--RK 907
Query: 1457 EHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKA 1516
E ++YLS++ + ETRY+ +EK C L ++ RLRHYL+++ +I + D +KY+
Sbjct: 908 ERVVFYLSRRLLNAETRYSPVEKLCLCLYFSCTRLRHYLLSNECTVICKADVVKYMLSAP 967
Query: 1517 AVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKS 1576
+ G+I +W L+E+D+ +++ KAIKG +A+ + D+ D+ I
Sbjct: 968 ILKGRIGKWIFSLTEFDLRYESPKAIKGQAIANFIV------------DYRDDSI----- 1010
Query: 1577 KDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMA 1636
G W L FDG+V +G GIG VI+SP+G F I TNN A
Sbjct: 1011 ----------GSVEVVPWTLFFDGSVCTHGCGIGLVIISPRGACFEFAYTIKPYATNNQA 1060
Query: 1637 EYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTK 1696
EYEA + G++ ++ ++I GDS L+I+Q+ GE+E + LI Y + + L+ F
Sbjct: 1061 EYEAVLKGLQLLKEVEADTIEIMGDSLLVISQLAGEYECKNDTLIVYNEKCQELMREFRL 1120
Query: 1697 VELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENV 1756
V L H+ R++N A+ LA +S +++ +IK ++E V
Sbjct: 1121 VTLKHVSREQNIEANDLAQGASGYKL-------MIKHVQIEVA----------------V 1157
Query: 1757 VDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGNILYKRNYDMVLLRCVDE 1816
+ W Y + Q+L S+ + LR A +++L + LY R D VLL+C+
Sbjct: 1158 ITADDWRYYVYQYLQD------PSQSASRKLRYKALKYILLDDELYYRTIDGVLLKCLST 1211
Query: 1817 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIH 1876
+A+ + +VH+G GTH + H M L AGY+W M DC+++ + C CQ +
Sbjct: 1212 DQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGYFWPTMLEDCFRYYKGCQDCQKFGAIQR 1271
Query: 1877 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1936
P A+N + PWPF WGIDMIG I P +S GH+FILVA DYFTKWVEA V
Sbjct: 1272 APASAMNPIIKPWPFRGWGIDMIGMINPPSSKGHKFILVATDYFTKWVEAIPLKKVDSGD 1331
Query: 1937 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 1996
+F++ +II R G+P I TD G+ ++ + I+ NSSPY Q NG EA+
Sbjct: 1332 AIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFIQFADSMGIKLLNSSPYYAQANGQAEAS 1391
Query: 1997 NKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIP 2055
NK++ +++++ ++ Y + WH L AL YR S P+ LVY +A+LP EV I
Sbjct: 1392 NKSLIKLIKRKISDYPRQWHTRLAEALWSYRMACHGSIQVPPYKLVYRHKAILPWEVRIG 1451
Query: 2056 SLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVG 2115
S R ++ L+ E+ D+ + + R+ A+A+ + R+ ++KKV P++F G
Sbjct: 1452 SRRTELQNDLTADEYSNLMADEREDLVQSRLRALAKVIKDKERVTRHYNKKVVPKDFSEG 1511
Query: 2116 ELVLK--RRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNADIVKK 2173
EL+ K I + GKW+PN+EGP+ + K S GA +L +DG +N +KK
Sbjct: 1512 ELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKVVSKGAYMLQGLDGEVYDRALNGKYLKK 1571
Query: 2174 YF 2175
Y+
Sbjct: 1572 YY 1573
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 696 bits (1797), Expect = 0.0
Identities = 404/1110 (36%), Positives = 603/1110 (53%), Gaps = 59/1110 (5%)
Query: 1078 KTSEKSRLVPL*RKGLNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1137
++ K++ +PL + ++N DIFAW DMPG+ ++EH + K + P++
Sbjct: 950 ESEAKTKKIPLDPSDPTKTANNK-----DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIK 1004
Query: 1138 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1197
Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK
Sbjct: 1005 QRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNK 1064
Query: 1198 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1257
+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY
Sbjct: 1065 SCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVT 1124
Query: 1258 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYK 1317
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R ++
Sbjct: 1125 MPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFR 1184
Query: 1318 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 1377
++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +S
Sbjct: 1185 MKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALS 1244
Query: 1378 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLA 1437
RF+S + P FKLL+K W E Q+AF+ K L EPP+L P PL++Y++
Sbjct: 1245 RFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVS 1304
Query: 1438 VFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRH 1493
+ + VL +++E G K + IY++S+ D +TRY ++K + T++L H
Sbjct: 1305 ATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSH 1364
Query: 1494 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1553
Y H+ +++ P+ I V G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1365 YFQGHSVTVVTSF-PLGDILHNREVNGRIAKWALELMSLDISFKPRISIKSQALADFVA- 1422
Query: 1554 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVI 1613
++ + D P E + + W + FDG+ G G G V+
Sbjct: 1423 ----EWTECQEDTPAENMEH--------------------WTMHFDGSKRLSGTGAGVVL 1458
Query: 1614 VSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEW 1673
+SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS L++NQ+ EW
Sbjct: 1459 ISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEW 1518
Query: 1674 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1733
N++ YR R+L F +EL H+ R N+ AD LA S R +DV V
Sbjct: 1519 SYLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDV---FV 1574
Query: 1734 QRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1793
+ L P+ + + + W + +FL S+E P QDK R++ R
Sbjct: 1575 EHLYTPTVPHKDTTQVAGTHDAAMVEVDWREPLIRFLTSQELP-----QDKDEAERISRR 1629
Query: 1794 ---FLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYY 1850
++L LYK++ +L RCV E QL+ D+H G G HA T+ K R G++
Sbjct: 1630 SKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFF 1689
Query: 1851 WMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGH 1910
W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA G+
Sbjct: 1690 WPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGY 1748
Query: 1911 RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQA 1970
+ VAID F+KW+EA +T F NI+ R+GVP++IITDNGT V +
Sbjct: 1749 THLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKD 1807
Query: 1971 LCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGY 2025
CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1808 FCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSL 1867
Query: 2026 RTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 2085
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE R
Sbjct: 1868 RTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVR 1924
Query: 2086 MDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKK 2145
A+ R Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++ +
Sbjct: 1925 EAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISE 1982
Query: 2146 AFSGGALILTHMDGIELPNPVNADIVKKYF 2175
G+ L DG + N N + +++++
Sbjct: 1983 VTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2012
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 694 bits (1792), Expect = 0.0
Identities = 403/1112 (36%), Positives = 603/1112 (53%), Gaps = 63/1112 (5%)
Query: 1078 KTSEKSRLVPL*RKGLNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1137
++ K++ +PL + ++N DIFAW DMPG+ ++EH + K + P++
Sbjct: 947 ESEAKTKKIPLDPSDPAKTANNK-----DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIK 1001
Query: 1138 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1197
Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK
Sbjct: 1002 QRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNK 1061
Query: 1198 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1257
+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY
Sbjct: 1062 SCPKDPFGLPRIDQVVDSTAGRELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVT 1121
Query: 1258 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYK 1317
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R ++
Sbjct: 1122 MPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFR 1181
Query: 1318 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 1377
++LNP KCTFGV SGKL+GF+VS +GI+ +P+KV AI M P T+K V+ G + +S
Sbjct: 1182 MKLNPEKCTFGVPSGKLVGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALS 1241
Query: 1378 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLA 1437
RF+S + P FKLL+K W E Q+AF+ K L EPP+L P PL++Y++
Sbjct: 1242 RFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVS 1301
Query: 1438 VFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRH 1493
+ + VL +++E G K + IY++S+ D +TRY ++K + T++L H
Sbjct: 1302 ATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSH 1361
Query: 1494 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1553
Y H+ +++ P+ I G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1362 YFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA- 1419
Query: 1554 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVI 1613
++ + D P E + + W + FDG+ G G G V+
Sbjct: 1420 ----EWTECQEDTPAENMEH--------------------WTMHFDGSKRLSGTGAGVVL 1455
Query: 1614 VSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEW 1673
+SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS L++NQ+ EW
Sbjct: 1456 ISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEW 1515
Query: 1674 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1733
N++ YR R+L F +EL H+ R N+ AD LA S V + + V
Sbjct: 1516 SCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFV 1571
Query: 1734 QRLERPSHVFAIGDVIDQAGENVVDY--RPWYYDIKQFLLSREYPPGASKQDKKTLRRLA 1791
+ L P+ D AG + V W + +FL S+E P QDK R++
Sbjct: 1572 EHLYTPT--VPHKDTTQVAGTHDVAMVETDWREPLIRFLTSQELP-----QDKDEAERIS 1624
Query: 1792 GR---FLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAG 1848
R +++ LYK++ +L RCV E QL+ D+H G G HA T+ K R G
Sbjct: 1625 RRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLQDIHSGICGNHAAARTIVGKAYRQG 1684
Query: 1849 YYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASN 1908
++W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA
Sbjct: 1685 FFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVG 1743
Query: 1909 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1968
G+ + VAID F+KW+EA +T F NI+ R+GVP++IITDNGT V
Sbjct: 1744 GYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVF 1802
Query: 1969 QALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALH 2023
+ CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1803 KDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLW 1862
Query: 2024 GYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEE 2083
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE
Sbjct: 1863 SLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEE 1919
Query: 2084 KRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVV 2143
R A+ R Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++
Sbjct: 1920 VREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFII 1977
Query: 2144 KKAFSGGALILTHMDGIELPNPVNADIVKKYF 2175
+ G+ L DG + N N + +++++
Sbjct: 1978 SEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2009
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 694 bits (1792), Expect = 0.0
Identities = 403/1110 (36%), Positives = 602/1110 (53%), Gaps = 59/1110 (5%)
Query: 1078 KTSEKSRLVPL*RKGLNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1137
++ K++ +PL + ++N DIFAW DMPG+ ++EH + K + P++
Sbjct: 949 ESEAKTKKIPLDPSDPTKTANNK-----DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIK 1003
Query: 1138 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1197
Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ MCVD+ DLNK
Sbjct: 1004 QRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWLMCVDYTDLNK 1063
Query: 1198 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1257
+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY
Sbjct: 1064 SCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVT 1123
Query: 1258 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYK 1317
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R ++
Sbjct: 1124 MPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFR 1183
Query: 1318 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 1377
++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M +P T+K V+ G + +S
Sbjct: 1184 MKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKSPSTQKDVQKLTGCMAALS 1243
Query: 1378 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLA 1437
RF+S + P FKLL+K W E Q+AF+ K L EPP+L P PL++Y++
Sbjct: 1244 RFVSRLGERGMPFFKLLKKTDSFRWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVS 1303
Query: 1438 VFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRH 1493
+ + VL +++E G K + IY++S+ D +TRY ++K + T++L H
Sbjct: 1304 ATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSH 1363
Query: 1494 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1553
Y H+ +++ P+ I G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1364 YFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA- 1421
Query: 1554 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVI 1613
++ + D P E + + W + FDG+ G G G V+
Sbjct: 1422 ----EWTECQEDTPAENMEH--------------------WTMHFDGSKRLSGTGAGVVL 1457
Query: 1614 VSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEW 1673
+SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS L++NQ+ EW
Sbjct: 1458 ISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEW 1517
Query: 1674 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1733
N++ YR R+L F +EL H+ R N+ AD LA S R +DV V
Sbjct: 1518 SCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDV---FV 1573
Query: 1734 QRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1793
+ L P+ A + + W + +FL S+E P QDK R++ R
Sbjct: 1574 EHLYSPTVPHKDATQAAGAHDVAMVEADWREPLIRFLTSQELP-----QDKDEAERISRR 1628
Query: 1794 ---FLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYY 1850
++L LYK++ +L RCV E QL+ D+H G G HA T+ K R G++
Sbjct: 1629 SKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFF 1688
Query: 1851 WMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGH 1910
W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA G+
Sbjct: 1689 WPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGY 1747
Query: 1911 RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQA 1970
+ VAID F+KW+EA +T F NI+ R+GVP++IITDNGT V +
Sbjct: 1748 THLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKD 1806
Query: 1971 LCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGY 2025
CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1807 FCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSL 1866
Query: 2026 RTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 2085
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE R
Sbjct: 1867 RTTSSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAR 1923
Query: 2086 MDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKK 2145
A+ R Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++ +
Sbjct: 1924 EAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISE 1981
Query: 2146 AFSGGALILTHMDGIELPNPVNADIVKKYF 2175
G+ L DG + N N + +++++
Sbjct: 1982 VTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2011
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 694 bits (1792), Expect = 0.0
Identities = 403/1112 (36%), Positives = 602/1112 (53%), Gaps = 63/1112 (5%)
Query: 1078 KTSEKSRLVPL*RKGLNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1137
++ K++ +PL + ++N DIFAW DMPG+ ++EH + K + P++
Sbjct: 954 ESEAKTKKIPLDPSNPTKTANNK-----DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIK 1008
Query: 1138 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1197
Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK
Sbjct: 1009 QRLRRFAQDRKDAIKEELTKLLAAGFIKEVHHPDWLANPVLVRKKTGQWRMCVDYTDLNK 1068
Query: 1198 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1257
+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY
Sbjct: 1069 SCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVT 1128
Query: 1258 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYK 1317
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R ++
Sbjct: 1129 MPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFR 1188
Query: 1318 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 1377
++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +S
Sbjct: 1189 MKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALS 1248
Query: 1378 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLA 1437
RF+S + P FKLL+K W E Q+AF+ K L EPP+L P PL++Y++
Sbjct: 1249 RFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVS 1308
Query: 1438 VFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRH 1493
+ + VL +++E G K + IY++S+ D +TRY ++K + T++L H
Sbjct: 1309 ATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSH 1368
Query: 1494 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1553
Y H+ +++ P+ I G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1369 YFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA- 1426
Query: 1554 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVI 1613
++ + D P E++ + W + FDG+ G G G V+
Sbjct: 1427 ----EWTECQEDTPAEKMEH--------------------WTMHFDGSKRLSGTGAGVVL 1462
Query: 1614 VSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEW 1673
+SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS L++NQ+ EW
Sbjct: 1463 ISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEW 1522
Query: 1674 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1733
N++ YR R+L F +EL H+ R N+ AD LA S V + + V
Sbjct: 1523 SCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFV 1578
Query: 1734 QRLERPSHVFAIGDVIDQAGENVVDY--RPWYYDIKQFLLSREYPPGASKQDKKTLRRLA 1791
+ L P+ D AG + V W + +FL S+E P QDK R++
Sbjct: 1579 EHLYTPT--VPHKDTTQVAGTHDVAMVEADWREPLIRFLTSQELP-----QDKDEAERIS 1631
Query: 1792 GR---FLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAG 1848
R +++ LYK++ +L RCV E QL+ D+H G G HA T+ K R G
Sbjct: 1632 RRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQG 1691
Query: 1849 YYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASN 1908
++W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA
Sbjct: 1692 FFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVG 1750
Query: 1909 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1968
G+ + VAID F+KW+EA +T F NI+ R+GVP++IITDNG V
Sbjct: 1751 GYTHLFVAIDKFSKWIEAKPVVTITADNAPDFF-INIVHRFGVPNRIITDNGRQFTGGVF 1809
Query: 1969 QALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALH 2023
+ CE+F I+ +S P NG VE AN I R+ ++ W E LP L
Sbjct: 1810 KDCCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVEQLPSVLW 1869
Query: 2024 GYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEE 2083
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE
Sbjct: 1870 SLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEE 1926
Query: 2084 KRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVV 2143
R A+ + Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++
Sbjct: 1927 VREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFII 1984
Query: 2144 KKAFSGGALILTHMDGIELPNPVNADIVKKYF 2175
G+ L DG + N N + +++++
Sbjct: 1985 SAVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2016
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 694 bits (1790), Expect = 0.0
Identities = 403/1112 (36%), Positives = 601/1112 (53%), Gaps = 63/1112 (5%)
Query: 1078 KTSEKSRLVPL*RKGLNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1137
++ K++ +PL + ++N DIFAW DMPG+ ++EH + K + P++
Sbjct: 954 ESEAKTKKIPLDPSDSTKTANNK-----DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIK 1008
Query: 1138 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1197
Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK
Sbjct: 1009 QRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNK 1068
Query: 1198 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1257
PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY
Sbjct: 1069 CCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVT 1128
Query: 1258 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYK 1317
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R ++
Sbjct: 1129 MPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFR 1188
Query: 1318 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 1377
++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +S
Sbjct: 1189 MKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALS 1248
Query: 1378 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLA 1437
RF+S + P FKLL+K W E Q+AF+ K L EPP+L P PL++Y++
Sbjct: 1249 RFVSRLGERGMPFFKLLKKTDDFHWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVS 1308
Query: 1438 VFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRH 1493
+ + VL +++E G K + IY++S+ D +TRY ++K + T++L H
Sbjct: 1309 ATSQVVSTVLVVEREEDGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSH 1368
Query: 1494 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1553
Y H +++ P+ I G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1369 YFQGHLVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA- 1426
Query: 1554 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVI 1613
++ + D P E++ + W + FDG+ G G G V+
Sbjct: 1427 ----EWTECQEDTPAEKVEH--------------------WTMHFDGSKRLSGTGAGVVL 1462
Query: 1614 VSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEW 1673
+SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS L++NQ+ EW
Sbjct: 1463 ISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEW 1522
Query: 1674 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1733
N++ YR R+L F +EL H+ R N+ AD LA S V + + V
Sbjct: 1523 SCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNKAADRLANFGSKREVAPSD----VFV 1578
Query: 1734 QRLERPSHVFAIGDVIDQAGENVVDY--RPWYYDIKQFLLSREYPPGASKQDKKTLRRLA 1791
+ L P+ D AG + V W + +FL S+E P QDK R++
Sbjct: 1579 EHLYAPT--VPHKDTTQVAGTHDVAMVEADWREPLIRFLTSQELP-----QDKDEAERIS 1631
Query: 1792 GR---FLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAG 1848
R +++ LYK++ +L RCV E QL+ D+H G G HA T+ K R G
Sbjct: 1632 RRSRLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQG 1691
Query: 1849 YYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASN 1908
++W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA
Sbjct: 1692 FFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAFG 1750
Query: 1909 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1968
G+ + VAID F+KW+EA +T F NI+ R+GVP++IITDNG V
Sbjct: 1751 GYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGRQFTGGVF 1809
Query: 1969 QALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALH 2023
+ CE+F I+ +S P NG VE AN I R+ ++ W E LP L
Sbjct: 1810 KDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVEQLPSVLW 1869
Query: 2024 GYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEE 2083
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE
Sbjct: 1870 SLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEE 1926
Query: 2084 KRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVV 2143
R A+ + Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++
Sbjct: 1927 VREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFII 1984
Query: 2144 KKAFSGGALILTHMDGIELPNPVNADIVKKYF 2175
+ G+ L DG + N N + +++++
Sbjct: 1985 SEVTRPGSYRLKREDGTLIDNSWNIEHLRRFY 2016
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 692 bits (1787), Expect = 0.0
Identities = 404/1112 (36%), Positives = 602/1112 (53%), Gaps = 63/1112 (5%)
Query: 1078 KTSEKSRLVPL*RKGLNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1137
++ K++ +PL + ++N DIFAW DMPG+ ++EH + K + P++
Sbjct: 887 ESEAKTKKIPLDPSDPTKTANNK-----DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIK 941
Query: 1138 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1197
Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK
Sbjct: 942 QRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNK 1001
Query: 1198 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1257
+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY
Sbjct: 1002 SCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVT 1061
Query: 1258 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYK 1317
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R ++
Sbjct: 1062 MPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFR 1121
Query: 1318 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 1377
++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +S
Sbjct: 1122 MKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALS 1181
Query: 1378 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLA 1437
RF+S + P FKLL+K W E Q+AF+ K L EPPIL P PL++Y++
Sbjct: 1182 RFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPILASPHPQEPLLLYVS 1241
Query: 1438 VFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRH 1493
+ + VL +++E G K + IY++S+ D +TRY ++K + T++L H
Sbjct: 1242 ATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSH 1301
Query: 1494 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1553
Y H+ +++ P+ I G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1302 YFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA- 1359
Query: 1554 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVI 1613
++ + D P E + + W + FDG+ G G G V+
Sbjct: 1360 ----EWTECQEDTPAENMEH--------------------WTMHFDGSKRLSGTGAGVVL 1395
Query: 1614 VSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEW 1673
+SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS L++NQ+ EW
Sbjct: 1396 ISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEW 1455
Query: 1674 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1733
N++ YR R+L F +EL H+ R N+ AD LA S + + + V
Sbjct: 1456 SCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREMAPSD----VFV 1511
Query: 1734 QRLERPS--HVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLA 1791
+ L P+ H D D +V+ W +FL S+E P QDK R++
Sbjct: 1512 EHLYTPTVPHKDTTQDA-DTHDVALVE-ADWREPFIRFLTSQELP-----QDKDEAERIS 1564
Query: 1792 GR---FLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAG 1848
R + + LYK++ +L RCV E QL+ D+H G G HA T+ K R G
Sbjct: 1565 RRSKLYAMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQG 1624
Query: 1849 YYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASN 1908
++W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA
Sbjct: 1625 FFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVG 1683
Query: 1909 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1968
G+ + VAID F+KW+EA +T F NI+ R+GVP++IITDNGT V
Sbjct: 1684 GYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVF 1742
Query: 1969 QALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALH 2023
+ CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1743 KDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLW 1802
Query: 2024 GYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEE 2083
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE
Sbjct: 1803 SLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEE 1859
Query: 2084 KRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVV 2143
R A+ R Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++
Sbjct: 1860 AREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFII 1917
Query: 2144 KKAFSGGALILTHMDGIELPNPVNADIVKKYF 2175
+ G+ L DG + N N + +++++
Sbjct: 1918 SEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1949
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 692 bits (1787), Expect = 0.0
Identities = 398/1087 (36%), Positives = 593/1087 (53%), Gaps = 54/1087 (4%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L+ DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K +
Sbjct: 941 LQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLA 1000
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA +
Sbjct: 1001 AGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCE 1060
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDM 1280
+ SF+D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F
Sbjct: 1061 LLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQ 1120
Query: 1281 IHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVS 1340
I + VE YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS
Sbjct: 1121 IGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVS 1180
Query: 1341 QKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPI 1400
+GI+ +P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K
Sbjct: 1181 HRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNF 1240
Query: 1401 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KK 1456
W E Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K
Sbjct: 1241 QWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKV 1300
Query: 1457 EHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKA 1516
+ IY++S+ D +TRY ++K + T++L HY H+ +++ P+ +
Sbjct: 1301 QRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNR 1359
Query: 1517 AVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKS 1576
G+IA+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1360 EANGRIAKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--- 1411
Query: 1577 KDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMA 1636
W + FDG+ G G G V++SP G + + I F ++N+A
Sbjct: 1412 -----------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVA 1454
Query: 1637 EYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTK 1696
EYEA + G+ AI + IK L + GDS L++NQ+ EW N++ YR R+L F
Sbjct: 1455 EYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDG 1514
Query: 1697 VELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENV 1756
+EL H+ R N+ AD LA S R +DV V+ L P+ + V
Sbjct: 1515 LELSHVLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQDADTHDVV 1570
Query: 1757 VDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGNILYKRNYDMVLLRC 1813
+ W +FL S+E P QDK R++ R +++ + LYK++ +L RC
Sbjct: 1571 MVEADWREPFIRFLSSQELP-----QDKDEAERISRRSKLYVMHESELYKKSPSGILQRC 1625
Query: 1814 VDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYAD 1873
V E QL+ D+H G G HA T+ K R G++W D + R C CQ +A
Sbjct: 1626 VSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFAR 1685
Query: 1874 KIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVT 1933
+IH+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1686 QIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTIT 1744
Query: 1934 KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAV 1993
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG V
Sbjct: 1745 ADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQV 1803
Query: 1994 EAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVL 2048
E AN I R+ ++ W + LP L RTT +TG +PF LVYG EA+L
Sbjct: 1804 ERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAML 1863
Query: 2049 PLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVH 2108
P EVE SLR E + + R D L+ +EE R A+ + Y ++ ++ V
Sbjct: 1864 PSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIQSARYLQGLRRYHNRNVR 1920
Query: 2109 PREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNA 2168
R F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N
Sbjct: 1921 SRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNI 1978
Query: 2169 DIVKKYF 2175
+ +++++
Sbjct: 1979 EHLRRFY 1985
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 691 bits (1784), Expect = 0.0
Identities = 401/1089 (36%), Positives = 595/1089 (53%), Gaps = 58/1089 (5%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L+ DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K +
Sbjct: 941 LQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLA 1000
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA +
Sbjct: 1001 AGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCE 1060
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDM 1280
+ SF+D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F
Sbjct: 1061 LLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQ 1120
Query: 1281 IHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVS 1340
I + VE YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS
Sbjct: 1121 IGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVS 1180
Query: 1341 QKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPI 1400
+GI+ +P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K
Sbjct: 1181 HRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNF 1240
Query: 1401 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KK 1456
W E Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K
Sbjct: 1241 QWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKV 1300
Query: 1457 EHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKA 1516
+ IY++S+ D + RY ++K + T++L HY H+ +++ P+ +
Sbjct: 1301 QRPIYFVSEVLADSKARYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNR 1359
Query: 1517 AVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKS 1576
G+IA+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1360 EANGRIAKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--- 1411
Query: 1577 KDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMA 1636
W + FDG+ G G G V++SP G + + I F ++N+A
Sbjct: 1412 -----------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVA 1454
Query: 1637 EYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTK 1696
EYEA + G+ AI + IK L + GDS L++NQ+ EW N++ YR R+L F
Sbjct: 1455 EYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDG 1514
Query: 1697 VELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPS--HVFAIGDVIDQAGE 1754
+EL H+ R N+ AD LA S R +DV V+ L P+ H D D
Sbjct: 1515 LELSHVLRHNNEAADRLANFGSK-RETAPSDV---FVEHLYTPTVPHKDTTQDA-DTRNI 1569
Query: 1755 NVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGNILYKRNYDMVLL 1811
+V+ W +FL S+E P QDK R++ R ++L + LYK++ +L
Sbjct: 1570 AMVE-ADWREPFIRFLTSQELP-----QDKDEAERISRRSKLYVLHESELYKKSPSGILQ 1623
Query: 1812 RCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIY 1871
RCV E QL+ D+H G G HA T+ K R G++W D + R C CQ +
Sbjct: 1624 RCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFF 1683
Query: 1872 ADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTN 1931
A +IH+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA
Sbjct: 1684 ARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVT 1742
Query: 1932 VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNG 1991
+T F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG
Sbjct: 1743 ITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNG 1801
Query: 1992 AVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEA 2046
VE AN I R+ ++ W + LP L RTT +TG +PF LVYG EA
Sbjct: 1802 QVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEA 1861
Query: 2047 VLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKK 2106
+LP EVE SLR E + + R D L+ +EE R A+ + Y ++ ++
Sbjct: 1862 MLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRN 1918
Query: 2107 VHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPV 2166
V R F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N
Sbjct: 1919 VRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSW 1976
Query: 2167 NADIVKKYF 2175
N + +++++
Sbjct: 1977 NIEHLRRFY 1985
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 691 bits (1783), Expect = 0.0
Identities = 402/1112 (36%), Positives = 602/1112 (53%), Gaps = 63/1112 (5%)
Query: 1078 KTSEKSRLVPL*RKGLNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1137
++ K++ +PL + ++N DIFAW DMPG+ ++EH + K + P++
Sbjct: 954 ESEAKTKKIPLDPSDPTKTANNK-----DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIK 1008
Query: 1138 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1197
Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK
Sbjct: 1009 QRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNK 1068
Query: 1198 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1257
+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY
Sbjct: 1069 SCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVT 1128
Query: 1258 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYK 1317
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R ++
Sbjct: 1129 MPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFR 1188
Query: 1318 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 1377
++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +S
Sbjct: 1189 MKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALS 1248
Query: 1378 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLA 1437
RF+S + P FKLL+K W E Q+AF+ K L EPP+L P PL++Y++
Sbjct: 1249 RFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVS 1308
Query: 1438 VFDESMGCVLG-QQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRH 1493
+ + VL +++E G K + IY++S+ D +TRY ++K + T++L H
Sbjct: 1309 ATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSH 1368
Query: 1494 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1553
Y H+ +++ P+ I G+IA+W + L D+ FK + +IK LAD +A
Sbjct: 1369 YFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDLSFKPRISIKSQALADFVA- 1426
Query: 1554 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVI 1613
+ +C+E + + W + FDG+ G G G V+
Sbjct: 1427 ---------------------EWTECQEDTTVKKME---HWTMHFDGSKRLSGTGAGVVL 1462
Query: 1614 VSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEW 1673
+SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS L++NQ+ EW
Sbjct: 1463 ISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEW 1522
Query: 1674 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1733
N+ YR R+L F +EL H+ R +N+ AD LA S V + + V
Sbjct: 1523 SCLDDNMKAYRQEVRKLEDKFDGLELSHVLRHDNEAADRLANFGSKREVAPSD----VFV 1578
Query: 1734 QRLERPSHVFAIGDVIDQAGENVVDY--RPWYYDIKQFLLSREYPPGASKQDKKTLRRLA 1791
+ L P+ D AG + V W + +FL S+E P QDK R++
Sbjct: 1579 EHLYTPT--VPHKDTTQAAGIHDVAMVETDWREPLIRFLTSQELP-----QDKDEAERIS 1631
Query: 1792 GR---FLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAG 1848
R +++ LYK++ +L RCV E QL+ D+H G G HA T+ K R G
Sbjct: 1632 RRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQG 1691
Query: 1849 YYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASN 1908
++W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA
Sbjct: 1692 FFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVG 1750
Query: 1909 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 1968
G+ + VAID F+KW+EA +T F NI+ R+GVP++IITDNGT V
Sbjct: 1751 GYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVF 1809
Query: 1969 QALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALH 2023
+ CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1810 KDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLW 1869
Query: 2024 GYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEE 2083
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE
Sbjct: 1870 SLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEE 1926
Query: 2084 KRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVV 2143
R A+ R Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++
Sbjct: 1927 VREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFII 1984
Query: 2144 KKAFSGGALILTHMDGIELPNPVNADIVKKYF 2175
+ G+ L DG + N N + +++++
Sbjct: 1985 SEVTRPGSYRLKREDGTLVDNSWNIEYLRRFY 2016
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 691 bits (1783), Expect = 0.0
Identities = 398/1110 (35%), Positives = 599/1110 (53%), Gaps = 59/1110 (5%)
Query: 1078 KTSEKSRLVPL*RKGLNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1137
++ K++ +PL + ++N DIFAW DMPG+ ++EH + K + P++
Sbjct: 693 ESEAKTKKIPLDPSDSTKTANNK-----DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIK 747
Query: 1138 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1197
Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK
Sbjct: 748 QRLRRFVQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNK 807
Query: 1198 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1257
PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP G +CY
Sbjct: 808 CCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPIGAYCYVT 867
Query: 1258 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYK 1317
MPFGL NAGATYQR + F I + VE YVDD+++K+ ++ + L + F +R ++
Sbjct: 868 MPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVIKTKQKDDLISDLEETFASIRAFR 927
Query: 1318 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 1377
++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +S
Sbjct: 928 MKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALS 987
Query: 1378 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLA 1437
RF+S + P FKLL+K W E Q+AF+ K +L EPP+L P PL++Y++
Sbjct: 988 RFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFLTEPPVLASPHPQEPLLLYVS 1047
Query: 1438 VFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRH 1493
+ + VL +++E G K + IY++S+ D +TRY ++K + T++L H
Sbjct: 1048 ATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSH 1107
Query: 1494 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1553
Y H+ +++ P+ I G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1108 YFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA- 1165
Query: 1554 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVI 1613
++ + D P E++ + W + FDG+ G G G V+
Sbjct: 1166 ----EWTECQEDTPAEKMEH--------------------WTMHFDGSKRLSGTGAGVVL 1201
Query: 1614 VSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEW 1673
+SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS L++NQ+ EW
Sbjct: 1202 ISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEW 1261
Query: 1674 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1733
N++ YR R+L F +EL H+ R N+ AD LA S V + + V
Sbjct: 1262 SCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFV 1317
Query: 1734 QRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1793
+ L P+ I + + W +FL S+E P QDK R++ R
Sbjct: 1318 EHLYTPTVPHKDTTQIAGTHDVALVEADWREPFIRFLTSQELP-----QDKDEAERISRR 1372
Query: 1794 ---FLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYY 1850
+++ LYK++ +L RCV E QL+ D+H G G HA T+ K R G++
Sbjct: 1373 SKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFF 1432
Query: 1851 WMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGH 1910
W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA G+
Sbjct: 1433 WPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGY 1491
Query: 1911 RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQA 1970
+ VAID F+KW+EA +T F NI+ R+GVP++IITDNG V +
Sbjct: 1492 THLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGRQFTGGVFKD 1550
Query: 1971 LCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGY 2025
CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1551 FCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVKQLPSVLWSL 1610
Query: 2026 RTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 2085
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE R
Sbjct: 1611 RTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVR 1667
Query: 2086 MDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKK 2145
A+ + Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++ +
Sbjct: 1668 EAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISE 1725
Query: 2146 AFSGGALILTHMDGIELPNPVNADIVKKYF 2175
G+ L DG + N N + +++++
Sbjct: 1726 VTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1755
>ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1991
Score = 690 bits (1781), Expect = 0.0
Identities = 393/1084 (36%), Positives = 591/1084 (54%), Gaps = 48/1084 (4%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L+ DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K +
Sbjct: 946 LQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLA 1005
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA +
Sbjct: 1006 AGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCE 1065
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDM 1280
+ SF+D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F
Sbjct: 1066 LLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQ 1125
Query: 1281 IHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVS 1340
I + VE YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS
Sbjct: 1126 IGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVS 1185
Query: 1341 QKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPI 1400
+GI+ +P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K
Sbjct: 1186 HRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNF 1245
Query: 1401 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KK 1456
W E Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K
Sbjct: 1246 QWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKV 1305
Query: 1457 EHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKA 1516
+ IY++S+ D +TRY ++K + T++L HY H+ +++ P+ +
Sbjct: 1306 QRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNR 1364
Query: 1517 AVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKS 1576
G+IA+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1365 EANGRIAKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--- 1416
Query: 1577 KDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMA 1636
W + FDG+ G G G V++SP G + + I F ++N+A
Sbjct: 1417 -----------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVA 1459
Query: 1637 EYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTK 1696
EYEA + G+ AI + IK L + GDS L++NQ+ EW N++ YR R+L F
Sbjct: 1460 EYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDG 1519
Query: 1697 VELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENV 1756
+EL H+ R N+ AD LA S R +DV V+ L P+ + +
Sbjct: 1520 LELSHVLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQVADTHDIA 1575
Query: 1757 VDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGNILYKRNYDMVLLRCVDE 1816
+ W + +FL S+E P K + + + R + +++ LYK++ +L RCV
Sbjct: 1576 MVEADWREPLIRFLTSQELP--QYKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSL 1633
Query: 1817 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIH 1876
E QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH
Sbjct: 1634 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1693
Query: 1877 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1936
+P L + WPF++WG+DM+G + KA G+ + +AID F+KW+EA +T
Sbjct: 1694 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFMAIDKFSKWIEAKPVVTITADN 1752
Query: 1937 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 1996
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE A
Sbjct: 1753 ARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERA 1811
Query: 1997 NKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2051
N I R+ ++ W LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1812 NGMILQRIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1871
Query: 2052 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPRE 2111
VE SLR E + + R D L+ +EE R A+ + Y ++ ++ V R
Sbjct: 1872 VEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRA 1928
Query: 2112 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNADIV 2171
F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +
Sbjct: 1929 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHI 1986
Query: 2172 KKYF 2175
++++
Sbjct: 1987 RRFY 1990
>gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536646|ref|NP_922625.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
gi|13876521|gb|AAK43497.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
Length = 2017
Score = 684 bits (1764), Expect = 0.0
Identities = 395/1110 (35%), Positives = 598/1110 (53%), Gaps = 59/1110 (5%)
Query: 1078 KTSEKSRLVPL*RKGLNRRSSNSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1137
++ K++ +PL + ++N DIFAW DMPG+ ++EH + K + P++
Sbjct: 954 ESEAKTKKIPLDPSDSTKTANNK-----DIFAWKPSDMPGIPREVIEHSLYVKEDAKPIK 1008
Query: 1138 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1197
Q+LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLN
Sbjct: 1009 QRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNI 1068
Query: 1198 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1257
+ PKD F LP ID +VD+TA ++ SF+D + GY+QI++ D KTSFITP+G +CY
Sbjct: 1069 SCPKDPFGLPRIDQVVDSTAGCELLSFLDCYLGYHQIRLKESDCLKTSFITPFGAYCYVT 1128
Query: 1258 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYK 1317
MPFGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R ++
Sbjct: 1129 MPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFR 1188
Query: 1318 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 1377
++LNP KCTFGV SGKLLGF+VS +GI+ +P+K+ AI M P T+K V+ G + +S
Sbjct: 1189 MKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKITAILNMKPPSTQKDVQKLTGCMAALS 1248
Query: 1378 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLA 1437
RF+S + P FKLL+K W + Q+AF+ K L EPP+L P PL++Y+A
Sbjct: 1249 RFVSRLGERGMPFFKLLKKTDDFQWGPDAQKAFEDFKKLLTEPPVLASPHPQEPLLLYIA 1308
Query: 1438 VFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRH 1493
+ + VL +++E G K + IY++S+ D +TRY ++K + T++L H
Sbjct: 1309 AASQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSH 1368
Query: 1494 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1553
Y +H+ +++ + I G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1369 YFQSHSVTVVTSFS-LGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA- 1426
Query: 1554 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVI 1613
++ + D P E++ + W + FDG+ G G G V+
Sbjct: 1427 ----EWTECQEDTPAEKMEH--------------------WTMHFDGSKRLSGTGAGVVL 1462
Query: 1614 VSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEW 1673
+SP G + + I F ++N+AEYEA + G+ AI + IK L + GDS L++NQ+ EW
Sbjct: 1463 ISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEW 1522
Query: 1674 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1733
N++ YR R+L F +EL H+ R N+ AD LA S V + + V
Sbjct: 1523 SCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFV 1578
Query: 1734 QRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1793
+ L P+ I + + W + +FL S+E P QDK R++ R
Sbjct: 1579 EHLYTPTVPHKDTTQIAGTHDVALVEADWREPLIRFLTSQELP-----QDKDEAERISRR 1633
Query: 1794 ---FLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYY 1850
+++ LYK++ +L RCV E QL+ D+H G G HA T+ K R G++
Sbjct: 1634 SKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFF 1693
Query: 1851 WMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGH 1910
W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA G+
Sbjct: 1694 WPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGY 1752
Query: 1911 RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQA 1970
+ VAID F+KW+EA +T F NI+ R+GVP++IITDNG V +
Sbjct: 1753 THLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGRQFTGGVFKD 1811
Query: 1971 LCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGY 2025
CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1812 FCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVKQLPSVLWSL 1871
Query: 2026 RTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 2085
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE R
Sbjct: 1872 RTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNYREERYEEDRVDDLHRLEEVR 1928
Query: 2086 MDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKK 2145
A+ + Y ++ ++ V R F VG+LVL++ Q R K +P +EGP+++
Sbjct: 1929 EAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISD 1986
Query: 2146 AFSGGALILTHMDGIELPNPVNADIVKKYF 2175
G+ L DG + N N + +++++
Sbjct: 1987 VTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2016
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 681 bits (1757), Expect = 0.0
Identities = 395/1087 (36%), Positives = 585/1087 (53%), Gaps = 68/1087 (6%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L+ DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K +
Sbjct: 977 LQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLA 1036
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA +
Sbjct: 1037 AGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCE 1096
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDM 1280
+ SF+D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F
Sbjct: 1097 LLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQ 1156
Query: 1281 IHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVS 1340
I + VE YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS
Sbjct: 1157 IGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLGFMVS 1216
Query: 1341 QKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPI 1400
+GI+ +P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K
Sbjct: 1217 HRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNF 1276
Query: 1401 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG-QQDETG---KK 1456
W E Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K
Sbjct: 1277 QWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLAVEREEEGHVQKV 1336
Query: 1457 EHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKA 1516
+ IY++S+ D +TRY ++K L H+ +++ P+ I
Sbjct: 1337 QRPIYFVSEVLADSKTRYPQVQK--------------LLYGHSVTVVTSF-PLGDILHNR 1381
Query: 1517 AVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKS 1576
G+IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1382 EANGRIAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH--- 1433
Query: 1577 KDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMA 1636
W + FDG+ G G G V++SP G + + I F ++N+A
Sbjct: 1434 -----------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVA 1476
Query: 1637 EYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTK 1696
EYEA + G+ AI + IK L + GDS L++NQ+ EW N++ YR R+L F
Sbjct: 1477 EYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDG 1536
Query: 1697 VELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENV 1756
+EL H+ R N+ AD LA S V + + V+ L P+ + +
Sbjct: 1537 LELSHVLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGTHDVA 1592
Query: 1757 VDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGNILYKRNYDMVLLRC 1813
V W + +FL S+E P QDK R++ R +++ LYK++ +L RC
Sbjct: 1593 VVETDWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRC 1647
Query: 1814 VDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYAD 1873
V E QL+ D+H G G HA T+ K R G++W D + R C CQ +A
Sbjct: 1648 VSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFAR 1707
Query: 1874 KIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVT 1933
+IH+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1708 QIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTIT 1766
Query: 1934 KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAV 1993
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG V
Sbjct: 1767 ADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQV 1825
Query: 1994 EAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVL 2048
E AN I R+ ++ W + LP L RTT +TG +PF LVYG EA+L
Sbjct: 1826 ERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAML 1885
Query: 2049 PLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVH 2108
P EVE SLR E + + R D L+ +EE R A+ R Y ++ ++ V
Sbjct: 1886 PSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVR 1942
Query: 2109 PREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNA 2168
R F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N
Sbjct: 1943 SRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNI 2000
Query: 2169 DIVKKYF 2175
+ +++++
Sbjct: 2001 EHLRRFY 2007
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 681 bits (1756), Expect = 0.0
Identities = 385/1079 (35%), Positives = 606/1079 (55%), Gaps = 56/1079 (5%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
++E +FAWS +++ G+D ++EH + K P +QKLRR D K E++K +
Sbjct: 974 VKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLK 1033
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
A + V +PEW+AN V V K +GK RMC+DF DLNKA PKD+FPLP ID LVD TA +
Sbjct: 1034 AKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCE 1093
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDM 1280
+ SF+D +SGY+Q+ M ED EKTSFITP+GT+C+ MPFGL NAGAT+ R + +
Sbjct: 1094 LMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQ 1153
Query: 1281 IHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVS 1340
+ + VE Y+DD++VKS H + L + FE LRK ++LNP KC FGVR+GKLLGF+VS
Sbjct: 1154 LGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNPEKCVFGVRAGKLLGFLVS 1213
Query: 1341 QKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPI 1400
++GIE +PDK+ AI +M P+ ++V+ GR+ +SRF+S P FK LR
Sbjct: 1214 KRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLRGANTF 1273
Query: 1401 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAI 1460
W ECQ+AFD +K YL E P L P +G+PL+MY+A ++ VL Q++E ++ +
Sbjct: 1274 EWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPATVSAVLVQEEE--NRQVPV 1331
Query: 1461 YYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTG 1520
Y++S+ +TRY+ +EK A+ A+++LRHY ++H + S PI + V G
Sbjct: 1332 YFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITIPSAY-PIGEVLTNKEVAG 1390
Query: 1521 KIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCE 1580
+IA+W M L +D+ + ++ AIK +LAD +A ++ P E + + ++ +
Sbjct: 1391 RIAKWAMELLPFDLKYISRTAIKSQVLADFVA-----EWTPNEVE---------QQEEVK 1436
Query: 1581 EPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMAEYEA 1640
+P W + DGA NA G G AV+ +P + ++ +++F TNN AEYE
Sbjct: 1437 KP-----------WIVFSDGACNAAGAGAAAVVKTPMKQTLKYSVQLVFPSTNNTAEYEG 1485
Query: 1641 CIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTKVELH 1700
+ + +A + + L + DS L+ +E + Y + AR +F + +
Sbjct: 1486 VLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAKYLEEARLNEKHFLGITVK 1545
Query: 1701 HIPRDENQMADALATLSSMFR--VNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVD 1758
I R+EN AD LA ++ + N + D+ + +PS+ I + G+
Sbjct: 1546 AITREENGEADELAKAAATGQPLENSFFDI-------ITQPSYEKKEVACIQREGD---- 1594
Query: 1759 YRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGNILYKRNYDMVLLRCVDEHE 1818
W I ++L+S + P +++ K ++ ++ ++ + LYK LL+CV E
Sbjct: 1595 ---WREPILKYLVSAQLP--EKEEEAKRIQLMSKKYKVVEGQLYKSGVTAPLLKCVTREE 1649
Query: 1819 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVP 1878
+++ ++H+G G H +++ K++R G YW + D ++ + C CQ + P
Sbjct: 1650 GMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEKYIKTCKACQKFGPMTKAP 1709
Query: 1879 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1938
P L + WPF WGID++G + P+A RF++VAI+YF++W+EA + +T V
Sbjct: 1710 PKELQPIPPVWPFYRWGIDIVGPL-PRAKGDLRFVIVAIEYFSRWIEAEAVARITSAAVQ 1768
Query: 1939 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1998
KF+ NIICR+G+P +I+ DNG + Q +C+ ++ + +S PQ NG VE AN
Sbjct: 1769 KFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQINFASVGHPQTNGVVERANG 1828
Query: 1999 NIKRIVQKMV--TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPS 2056
I ++K + + W E L L RTTV STG TPF LVYG EA+ P EV S
Sbjct: 1829 KIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPFRLVYGDEAMTPSEVGAHS 1888
Query: 2057 LRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGE 2116
R+I + K E R L +++E R++A+ + SY K+ +++KV R + G+
Sbjct: 1889 PRMIFDQKDEE-----GREITLEMLDEIRVEALEKMASYTEGTKSYYNQKVKTRPIEEGD 1943
Query: 2117 LVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNADIVKKYF 2175
LVLK+ +++ GK +EGP++VKK GA L ++DG EL + NA +KK++
Sbjct: 1944 LVLKKVLNEV--AVGKLESKWEGPFIVKKKTETGAFKLAYLDGEELKHTWNAVSLKKFY 2000
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.340 0.148 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,373,991,443
Number of Sequences: 2540612
Number of extensions: 136447949
Number of successful extensions: 472074
Number of sequences better than 10.0: 35440
Number of HSP's better than 10.0 without gapping: 4728
Number of HSP's successfully gapped in prelim test: 30712
Number of HSP's that attempted gapping in prelim test: 452210
Number of HSP's gapped (non-prelim): 41298
length of query: 2175
length of database: 863,360,394
effective HSP length: 144
effective length of query: 2031
effective length of database: 497,512,266
effective search space: 1010447412246
effective search space used: 1010447412246
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 83 (36.6 bits)
Medicago: description of AC135162.7