BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135162.11 + phase: 0 /pseudo
(385 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis tha... 126 1e-27
gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis tha... 126 1e-27
emb|CAB42059.1| Tpv2-1c [Phaseolus vulgaris] 125 3e-27
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana] 125 3e-27
gb|AAT38797.1| putative polyprotein [Solanum demissum] 125 3e-27
gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 124 4e-27
gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsi... 124 5e-27
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 124 6e-27
pir||H86461 hypothetical protein T3M13.16 - Arabidopsis thaliana... 123 8e-27
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 123 8e-27
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 123 8e-27
gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana] 123 8e-27
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] gi... 123 1e-26
gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana] 123 1e-26
gb|AAT38786.1| putative gag-pol polyprotein [Solanum demissum] 122 1e-26
gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum] 122 2e-26
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 122 2e-26
ref|XP_474043.1| OSJNBb0034I13.10 [Oryza sativa (japonica cultiv... 119 2e-25
ref|XP_474787.1| OSJNBb0026E15.10 [Oryza sativa (japonica cultiv... 117 6e-25
gb|AAP51989.1| putative pol polyprotein [Oryza sativa (japonica ... 116 1e-24
>gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 126 bits (317), Expect = 1e-27
Identities = 61/132 (46%), Positives = 88/132 (66%), Gaps = 1/132 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
ED + RL KALYGLKQ+ RAWN RI + +++F+KC E+ +Y+K K+ L+ CLYV
Sbjct: 974 EDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILI-ACLYV 1032
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DDLI T +N + E FK M K+F MTD+G ++Y+LG+E + G+ Q+ YA ++LK
Sbjct: 1033 DDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLK 1092
Query: 122 RFNMLNCNPAST 133
+F M + NP T
Sbjct: 1093 KFKMDDSNPVCT 1104
>gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321254|gb|AAG50698.1| copia-type polyprotein,
putative [Arabidopsis thaliana] gi|25301687|pir||F96614
probable copia-type polyprotein T18I24.5 [imported] -
Arabidopsis thaliana
Length = 1320
Score = 126 bits (317), Expect = 1e-27
Identities = 61/132 (46%), Positives = 88/132 (66%), Gaps = 1/132 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
ED + RL KALYGLKQ+ RAWN RI + +++F+KC E+ +Y+K K+ L+ CLYV
Sbjct: 942 EDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILI-ACLYV 1000
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DDLI T +N + E FK M K+F MTD+G ++Y+LG+E + G+ Q+ YA ++LK
Sbjct: 1001 DDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLK 1060
Query: 122 RFNMLNCNPAST 133
+F M + NP T
Sbjct: 1061 KFKMDDSNPVCT 1072
>emb|CAB42059.1| Tpv2-1c [Phaseolus vulgaris]
Length = 374
Score = 125 bits (313), Expect = 3e-27
Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
E + +L KALYGLKQ+ RAWN RI + + F +C E+ +Y KN+ N++ + LYV
Sbjct: 2 EKKVLKLKKALYGLKQAPRAWNTRIDTYFKENGFKQCPYEHALYAKNN-GGNMIFVALYV 60
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DDLI +N IE FKG M ++F MTDLG + +FLG+E + G+ Q+KYA +ILK
Sbjct: 61 DDLIFMGNNNDMIEEFKGTMRREFEMTDLGLMKFFLGLEVRQKETGIFVSQEKYAKEILK 120
Query: 122 RFNMLNCNPAS 132
++ M NCNP S
Sbjct: 121 KYKMENCNPVS 131
>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
Length = 623
Score = 125 bits (313), Expect = 3e-27
Identities = 60/132 (45%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
ED + RL K LYGLKQ+ RAWN RI + +++F+KC E+ +Y+K K+ L+ CLYV
Sbjct: 471 EDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILI-ACLYV 529
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DDLI T +N + E FK M K+F MTD+G ++Y+LG+E + G+ Q+ YA ++LK
Sbjct: 530 DDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLK 589
Query: 122 RFNMLNCNPAST 133
+F M + NP T
Sbjct: 590 KFKMDDSNPVCT 601
>gb|AAT38797.1| putative polyprotein [Solanum demissum]
Length = 1758
Score = 125 bits (313), Expect = 3e-27
Identities = 64/132 (48%), Positives = 89/132 (66%), Gaps = 1/132 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
ED ++ L KALYGLKQS RAW +R+ N L+Q F + ++E +YVK + +L+ + +YV
Sbjct: 835 EDQVYLLTKALYGLKQSPRAWYERMDNHLIQLGFSRSQSEATLYVKVTAGESLI-VSIYV 893
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DD++VT S + I+ FK M K F MTDLG + YFLGME ++S+G+ Q+KY DIL
Sbjct: 894 DDMLVTGSKIELIQRFKDEMEKIFEMTDLGVMKYFLGMEVLQSSDGIFICQQKYILDILN 953
Query: 122 RFNMLNCNPAST 133
RF M +C P ST
Sbjct: 954 RFKMQDCKPVST 965
Score = 84.7 bits (208), Expect = 4e-15
Identities = 46/129 (35%), Positives = 78/129 (59%), Gaps = 3/129 (2%)
Query: 5 IFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYVDDL 64
I RLHKA Y LKQ+ RA + N L+ F+K +++ +++V++ + +V++ +YVDD+
Sbjct: 1449 ICRLHKAFYRLKQAPRACYNELKNHLLLLGFIKSESDNSLFVRHHSHA-IVYLLVYVDDI 1507
Query: 65 IVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILKRFN 124
IVT +N + + + + + DL LTYFLG+E ++ +G++ Q Y DIL+ N
Sbjct: 1508 IVTGNNTSVVNQVISSLAAR--VKDLEALTYFLGIEVIRSVDGIIMTQSTYKRDILREEN 1565
Query: 125 MLNCNPAST 133
M +C A T
Sbjct: 1566 MADCKLAKT 1574
>gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25301681|pir||F86246
hypothetical protein [imported] - Arabidopsis thaliana
Length = 1352
Score = 124 bits (312), Expect = 4e-27
Identities = 60/132 (45%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
ED + RL K LYGLKQ+ RAWN RI + +++F+KC E+ +Y+K K+ L+ CLYV
Sbjct: 974 EDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILI-ACLYV 1032
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DDLI T +N + E FK M K+F MTD+G ++Y+LG+E + G+ Q+ YA ++LK
Sbjct: 1033 DDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLK 1092
Query: 122 RFNMLNCNPAST 133
+F M + NP T
Sbjct: 1093 KFKMDDSNPVCT 1104
>gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301692|pir||H84467 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1307
Score = 124 bits (311), Expect = 5e-27
Identities = 60/130 (46%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Query: 1 NEDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLY 60
NE +++LHKALYGLKQ+ RAWN ++ L + FVKC E +VY + ++ L+ + +Y
Sbjct: 916 NEGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSVY-RRQEEKKLLIVAIY 974
Query: 61 VDDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDIL 120
VDDL+VT S+L I FK M KF M+DLG+LTY+LG+E G++ Q++YA I+
Sbjct: 975 VDDLLVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIEVLHRKNGIILRQERYAMKII 1034
Query: 121 KRFNMLNCNP 130
+ M NCNP
Sbjct: 1035 EEAGMSNCNP 1044
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
gi|11278363|pir||T49313 copia-type reverse
transcriptase-like protein - Arabidopsis thaliana
Length = 1272
Score = 124 bits (310), Expect = 6e-27
Identities = 59/130 (45%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
ED + RL K LYGLKQ+ RAWN RI + +++F+KC E+ +Y+K K+ L+ CLYV
Sbjct: 974 EDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILI-ACLYV 1032
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DDLI T +N + E FK M K+F MTD+G ++Y+LG+E + G+ Q+ YA ++LK
Sbjct: 1033 DDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLK 1092
Query: 122 RFNMLNCNPA 131
+F M + NP+
Sbjct: 1093 KFKMDDSNPS 1102
>pir||H86461 hypothetical protein T3M13.16 - Arabidopsis thaliana
gi|12324506|gb|AAG52211.1| hypothetical protein;
74056-75837 [Arabidopsis thaliana]
Length = 503
Score = 123 bits (309), Expect = 8e-27
Identities = 63/134 (47%), Positives = 92/134 (68%), Gaps = 3/134 (2%)
Query: 1 NEDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKN-SKDSNLVHICL 59
+ED +++L+KALYGL+Q+ RAWN ++ + LV+ +F+KC E +VY K SKD L+ I +
Sbjct: 111 SEDKVYKLNKALYGLRQAPRAWNNKLNHILVELQFLKCSKEPSVYRKEVSKD--LLLIAI 168
Query: 60 YVDDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDI 119
YVDDL VT +NL I FK M KF M++LGKLTY+LG+E + +G+ +Q +YA I
Sbjct: 169 YVDDLFVTGTNLDIINKFKEEMSSKFEMSNLGKLTYYLGIEVIQHKDGIALNQNRYALKI 228
Query: 120 LKRFNMLNCNPAST 133
L+ M++CN T
Sbjct: 229 LEEAGMIDCNRVHT 242
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
gi|25301683|pir||E86451 probable copia-type polyprotein,
28768-32772 [imported] - Arabidopsis thaliana
Length = 1334
Score = 123 bits (309), Expect = 8e-27
Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 21/157 (13%)
Query: 5 IFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYVDDL 64
+++L KALYGLKQ+ RAW RI F ++ F KC E+ ++VK + LV + +YVDDL
Sbjct: 965 VYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKKERSDFLV-VSVYVDDL 1023
Query: 65 IVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILKRFN 124
I T S++ IE FK MM++F MTDLGK+ YFLG+E + G+ +Q+KYA++I+K++
Sbjct: 1024 IYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYG 1083
Query: 125 MLNCNPAS--------------------TLFKQIVGS 141
M CN T FKQ++GS
Sbjct: 1084 MEGCNSVKNPIVPGQKLTKAGAGDAVDPTEFKQLIGS 1120
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 123 bits (309), Expect = 8e-27
Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 21/157 (13%)
Query: 5 IFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYVDDL 64
+++L KALYGLKQ+ RAW RI F ++ F KC E+ ++VK + LV + +YVDDL
Sbjct: 965 VYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKKERSDFLV-VSVYVDDL 1023
Query: 65 IVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILKRFN 124
I T S++ IE FK MM++F MTDLGK+ YFLG+E + G+ +Q+KYA++I+K++
Sbjct: 1024 IYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYG 1083
Query: 125 MLNCNPAS--------------------TLFKQIVGS 141
M CN T FKQ++GS
Sbjct: 1084 MEGCNSVKNPIVPGQKLTKAGAGDAVDPTEFKQLIGS 1120
>gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 123 bits (309), Expect = 8e-27
Identities = 60/132 (45%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
ED + RL KALYGLKQ+ RAWN RI + +++F+KC E+ +Y+K K+ L+ CLYV
Sbjct: 913 EDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILI-ACLYV 971
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DDLI T +N + E FK M K+F MTD+G ++Y+LG+E + + Q+ YA ++LK
Sbjct: 972 DDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNRIFITQEGYAKEVLK 1031
Query: 122 RFNMLNCNPAST 133
+F M + NP T
Sbjct: 1032 KFKMDDSNPVCT 1043
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] gi|11278364|pir||T47925
copia-type polyprotein - Arabidopsis thaliana
Length = 1352
Score = 123 bits (308), Expect = 1e-26
Identities = 59/132 (44%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
ED + RL K LYGLKQ+ RAWN RI + +++F+KC E+ +Y+K K+ L+ CLYV
Sbjct: 974 EDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILI-ACLYV 1032
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DDLI T +N + E FK M K+F MTD+G ++Y+LG+E + G+ Q+ YA ++LK
Sbjct: 1033 DDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLK 1092
Query: 122 RFNMLNCNPAST 133
+F + + NP T
Sbjct: 1093 KFKIDDSNPVCT 1104
>gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 123 bits (308), Expect = 1e-26
Identities = 59/125 (47%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Query: 5 IFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYVDDL 64
+++L KALYGLKQ+ RAW RI F ++ F KC E+ ++VK + LV + +YVDDL
Sbjct: 870 VYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKKERSDFLV-VSVYVDDL 928
Query: 65 IVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILKRFN 124
I T S++ IE FK MM++F MTDLGK+ YFLG+E + G+ +Q+KYA++I+K++
Sbjct: 929 IYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYG 988
Query: 125 MLNCN 129
M CN
Sbjct: 989 MEGCN 993
>gb|AAT38786.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1133
Score = 122 bits (307), Expect = 1e-26
Identities = 63/131 (48%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
Query: 3 DMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYVD 62
D ++ L KALYGLKQ+ RAW RI ++L+ F + E +Y++ D L+ + LYVD
Sbjct: 758 DQVYLLRKALYGLKQAPRAWYARIDSYLLNLGFKRSCNETTLYIRLQNDDFLL-VSLYVD 816
Query: 63 DLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILKR 122
DL+VT S+ I+ FK M K F M DLGK+TYFLGME ++S+G+ QKKYA++ILK+
Sbjct: 817 DLLVTGSSTQSIKDFKEQMKKVFEMNDLGKMTYFLGMEVNQSSQGIFVSQKKYATEILKK 876
Query: 123 FNMLNCNPAST 133
F + C P ST
Sbjct: 877 FCLDKCKPVST 887
>gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1333
Score = 122 bits (306), Expect = 2e-26
Identities = 58/133 (43%), Positives = 85/133 (63%)
Query: 1 NEDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLY 60
NE+ +++L KALYGLKQ+ RAW +I +F F + E +Y+K + +CLY
Sbjct: 954 NENKVYKLRKALYGLKQAPRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLY 1013
Query: 61 VDDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDIL 120
VDD+I S+ + + FK +MM+ F M+DLG L YFLG+E + +G+ QKKYA D+L
Sbjct: 1014 VDDMIYIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQKKYAEDLL 1073
Query: 121 KRFNMLNCNPAST 133
K+F M+NC A+T
Sbjct: 1074 KKFQMMNCEVATT 1086
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 122 bits (305), Expect = 2e-26
Identities = 63/132 (47%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
E + +LHKALYGLKQ+ RAW RI + ++ F + + YVK + LV + LYV
Sbjct: 977 EGKVLKLHKALYGLKQAPRAWYGRIDGYFIKNGFERSINDAAFYVKKTSKEILV-VSLYV 1035
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DD+IVT SN+ EIE FK M +F MTDLG+L+YFLGME + EG+ Q+ YA +LK
Sbjct: 1036 DDIIVTGSNVKEIERFKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLK 1095
Query: 122 RFNMLNCNPAST 133
+F M C ST
Sbjct: 1096 KFGMQECKSVST 1107
>ref|XP_474043.1| OSJNBb0034I13.10 [Oryza sativa (japonica cultivar-group)]
gi|21741247|emb|CAD41731.1| OSJNBb0034I13.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1425
Score = 119 bits (297), Expect = 2e-25
Identities = 61/130 (46%), Positives = 84/130 (63%), Gaps = 1/130 (0%)
Query: 1 NEDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLY 60
N + +L KALYGL+Q+ RAWN ++ N L+ +F K E VYV+ DS L+ + +Y
Sbjct: 1049 NASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAVYVRGVGDSKLI-VGVY 1107
Query: 61 VDDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDIL 120
VDDLI+T S EI+AFK M ++FNM+DLG L+Y+LGME + EG+ Q YA IL
Sbjct: 1108 VDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSYYLGMEVVQKGEGIFLSQSAYAGKIL 1167
Query: 121 KRFNMLNCNP 130
++ M CNP
Sbjct: 1168 EKTGMEGCNP 1177
>ref|XP_474787.1| OSJNBb0026E15.10 [Oryza sativa (japonica cultivar-group)]
gi|38344222|emb|CAE03692.2| OSJNBb0026E15.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 117 bits (293), Expect = 6e-25
Identities = 57/133 (42%), Positives = 88/133 (65%), Gaps = 1/133 (0%)
Query: 1 NEDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLY 60
+++ ++RLHKALYGL+Q+ RAWN ++ + L+ F + +E+ VY + L+ + +Y
Sbjct: 1069 HKNKVYRLHKALYGLRQAPRAWNAKLDSSLLSLGFHRSSSEHGVYTRTRGGRRLM-VGVY 1127
Query: 61 VDDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDIL 120
VDDLI+T + EI +FKG MMK F M+DLG L Y+LG+E T+ S+G+ Q YA IL
Sbjct: 1128 VDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQDSDGITLGQAAYAGKIL 1187
Query: 121 KRFNMLNCNPAST 133
++ + +CNP T
Sbjct: 1188 EKAGLKDCNPCQT 1200
>gb|AAP51989.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530800|ref|NP_919702.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|21326494|gb|AAM47622.1| Putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20514806|gb|AAM23251.1| Putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1426
Score = 116 bits (291), Expect = 1e-24
Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 1/128 (0%)
Query: 2 EDMIFRLHKALYGLKQSLRAWNKRIVNFLVQQEFVKCKAEYNVYVKNSKDSNLVHICLYV 61
E + RL KALYGLKQ+ RAWN ++ N L+ F+K + E VYV+ + S L+ + +YV
Sbjct: 1051 EGQVLRLKKALYGLKQAPRAWNAKLHNTLISLNFIKSETESAVYVRGTGSSRLI-VGVYV 1109
Query: 62 DDLIVTDSNLAEIEAFKGHMMKKFNMTDLGKLTYFLGMEFTKTSEGLVKHQKKYASDILK 121
DDLI++ + +EI+ FK M KKF M+DLG L+Y+LGME + +G+ Q YA+ IL+
Sbjct: 1110 DDLIISGAQASEIDFFKEEMKKKFRMSDLGLLSYYLGMEVVQKDDGVFLSQTAYAAKILE 1169
Query: 122 RFNMLNCN 129
+ M CN
Sbjct: 1170 KTGMEGCN 1177
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.366 0.163 0.562
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,585,643
Number of Sequences: 2540612
Number of extensions: 14900235
Number of successful extensions: 100189
Number of sequences better than 10.0: 1425
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 97873
Number of HSP's gapped (non-prelim): 1563
length of query: 385
length of database: 863,360,394
effective HSP length: 130
effective length of query: 255
effective length of database: 533,080,834
effective search space: 135935612670
effective search space used: 135935612670
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 76 (33.9 bits)
Medicago: description of AC135162.11