BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134967.10 + phase: 0 /pseudo
(624 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 195 4e-48
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 192 3e-47
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 192 3e-47
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 191 8e-47
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 189 3e-46
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 188 5e-46
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 187 7e-46
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 187 9e-46
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 187 1e-45
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 184 6e-45
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 184 6e-45
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 181 6e-44
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 179 2e-43
ref|NP_912588.1| Putative non-LTR retroelement reverse transcrip... 177 7e-43
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 176 2e-42
ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultiv... 176 3e-42
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 175 3e-42
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 175 3e-42
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 175 4e-42
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 170 1e-40
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 195 bits (495), Expect = 4e-48
Identities = 124/350 (35%), Positives = 177/350 (50%), Gaps = 21/350 (6%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI + V +V VN F +GLRQGDPLSP LF LAAE L ++++ E
Sbjct: 410 WCDWIMKVVMGGKVAVKVNDQIGSFFKTHKGLRQGDPLSPLLFNLAAEALTLLVQRAEEN 469
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
L G N I + LQ+ADDT+ L + + + L+ L LFE +SGLK+NF+KS
Sbjct: 470 SLIEGLGTNGDNKIAI--LQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKINFNKSE 527
Query: 121 LVGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNS 180
+ +++ +CKVG +P YL +PI W+ N+++ +L W
Sbjct: 528 VFCFGEAKEKQDLYSNIFTCKVGSLPLKYLGIPIDQKRILNKDWKLAENKMEHKLGCWQG 587
Query: 181 RFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISW 240
R S GGRL+LL S L+S+P+Y +SF++ P G+ ID F G RK
Sbjct: 588 RLQSIGGRLILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGI---RKYHL 644
Query: 241 LSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGE----LGG 296
++W VC ++ GGLGV L+ N A+LGKW WR L + G W ++ A+Y G
Sbjct: 645 VNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWR-LENEEGWWQEIIYAKYCSDKPLSGL 703
Query: 297 RLEVGGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
RL+ G S +W V ++D F + VG+G T FW D
Sbjct: 704 RLKAGS---SHFWQGVMEVKDD--------FFSFCTKIVGNGEKTLFWED 742
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 192 bits (488), Expect = 3e-47
Identities = 112/292 (38%), Positives = 168/292 (57%), Gaps = 5/292 (1%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W KWI V + SVLVNG P +RG+RQGDPLSP+LF+L A+ LN ++K+ V
Sbjct: 964 WIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAE 1023
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
G IG P V+HLQFADD+L + N +AL+ ++E SG K+N KSM
Sbjct: 1024 GDIRGIRIGNGVP-GVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSM 1082
Query: 121 LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
+ G + + ++L + YL +P ++ + I+ R+K R S W+
Sbjct: 1083 ITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWS 1142
Query: 180 SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
+++LS G+ ++LKSV S+PVYA+S FK P I+S I++L +NF+ + R+I
Sbjct: 1143 AKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFW---WEKNAKKREIP 1199
Query: 240 WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
W++W+ + K+ GGLG R L +FN ALL K WRM+ + L+ R++ ARY
Sbjct: 1200 WIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARY 1251
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 192 bits (488), Expect = 3e-47
Identities = 112/292 (38%), Positives = 168/292 (57%), Gaps = 5/292 (1%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W KWI V + SVLVNG P +RG+RQGDPLSP+LF+L A+ LN ++K+ V
Sbjct: 984 WIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAE 1043
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
G IG P V+HLQFADD+L + N +AL+ ++E SG K+N KSM
Sbjct: 1044 GDIRGIRIGNGVP-GVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSM 1102
Query: 121 LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
+ G + + ++L + YL +P ++ + I+ R+K R S W+
Sbjct: 1103 ITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWS 1162
Query: 180 SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
+++LS G+ ++LKSV S+PVYA+S FK P I+S I++L +NF+ + R+I
Sbjct: 1163 AKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFW---WEKNAKKREIP 1219
Query: 240 WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
W++W+ + K+ GGLG R L +FN ALL K WRM+ + L+ R++ ARY
Sbjct: 1220 WIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARY 1271
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 191 bits (484), Expect = 8e-47
Identities = 119/350 (34%), Positives = 181/350 (51%), Gaps = 18/350 (5%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI C++T VL+NG P KRGLRQGDPLSP+LF+L E L ++ +
Sbjct: 452 WISWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVLIANIRKAEQE 511
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
+L +G + A+P VSHL FA+D+L + + L +EA+SG +NF KS
Sbjct: 512 KLITGIKVATASP-SVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSS 570
Query: 121 L-VGVNIGSSWLYEAASVLSCKV--GIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSG 177
+ G +G E S L G+ +L L +GG+ R+ + + +R+++R++G
Sbjct: 571 IQFGHKVGDDIKAEIKSALGIHSIGGMGSYLGLPESLGGSKTRI--FSFVRDRLQTRING 628
Query: 178 WNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRK 237
W+++FLS GG+ V++KSV+ LP Y +S F+ P I S + S F+ G ++R
Sbjct: 629 WSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFWWSSDG---ESRG 685
Query: 238 ISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGR 297
+ W++W +C K GGLG R + +FN ALL K WR++ L+ +V RY
Sbjct: 686 MHWMAWNKLCSSKADGGLGFRSVNDFNSALLAKQLWRLITVPDSLFAKVFKGRYFRKSNP 745
Query: 298 LE-VGGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
L+ + S S W + R V G ++ RVG G S W D
Sbjct: 746 LDKLKSYSPSYGWRSIISARSLVKKG--------LINRVGSGASISVWED 787
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 189 bits (479), Expect = 3e-46
Identities = 111/347 (31%), Positives = 182/347 (51%), Gaps = 19/347 (5%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W +W+K +V +NG D F RG+RQGDPLSP LF L A+ L+ ++ + +A
Sbjct: 146 WIQWVKMATIGGKMAVNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLNNAKQA 205
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
+ P ++HLQ+ADDT+L + + N+ ++ L +EAMSGLK+N+ KS
Sbjct: 206 -------VPHLVPGGLTHLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQKSE 258
Query: 121 LVGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNS 180
++ + A + +C+ G +PF YL +PI N + N+I+ RL+ W
Sbjct: 259 IMVIGGDEMETQRVADLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKC 318
Query: 181 RFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISW 240
+LS+GG+ +L+ S L+S+P+Y + + P G+ + +DS+ FF G E RK
Sbjct: 319 GYLSYGGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFF---WEGLEKKRKYHM 375
Query: 241 LSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY-GELGGRLE 299
+ W+ +C KE GGLG ++ N+ALL KW +R+ + +L +Y + GG +
Sbjct: 376 IKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQ 435
Query: 300 VGGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
S +W + ++ + G S +VG+G T+FWSD
Sbjct: 436 SKAEESSQFWKGLHEVKKWMDLGSS--------YKVGNGKATNFWSD 474
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 188 bits (477), Expect = 5e-46
Identities = 111/292 (38%), Positives = 165/292 (56%), Gaps = 5/292 (1%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI V + SVL+NGSP RG+RQGDPLSP+LF+L + L+ ++ +
Sbjct: 758 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASS 817
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
G IG P ++HLQFADD+L + N +AL+ ++E SG K+N KSM
Sbjct: 818 GDLRGVRIGNGAP-AITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSM 876
Query: 121 LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
+ G + S + +L YL +P ++ +E I++R+K R S W+
Sbjct: 877 ITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWS 936
Query: 180 SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
+RFLS G+ ++LKSV ++PVYA+S FK P GI+S I+SL +NF+ + + R I
Sbjct: 937 ARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFW---WEKASNQRGIP 993
Query: 240 WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
W++W+ + K+ GGLG R L +FN ALL K WR++ L+ RV+ ARY
Sbjct: 994 WVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY 1045
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 187 bits (476), Expect = 7e-46
Identities = 111/292 (38%), Positives = 164/292 (56%), Gaps = 5/292 (1%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI V + SVL+NGSP RG+RQGDPLSP+LF+L + L+ ++ +
Sbjct: 984 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASS 1043
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
G IG P ++HLQFADD+L + N +AL+ ++E SG K+N KSM
Sbjct: 1044 GDLRGVRIGNGAP-AITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSM 1102
Query: 121 LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
+ G + S +L YL +P ++ +E I++R+K R S W+
Sbjct: 1103 ITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWS 1162
Query: 180 SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
+RFLS G+ ++LKSV ++PVYA+S FK P GI+S I+SL +NF+ + + R I
Sbjct: 1163 ARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFW---WEKASNQRGIP 1219
Query: 240 WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
W++W+ + K+ GGLG R L +FN ALL K WR++ L+ RV+ ARY
Sbjct: 1220 WVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY 1271
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 187 bits (475), Expect = 9e-46
Identities = 119/332 (35%), Positives = 182/332 (53%), Gaps = 14/332 (4%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI V + SVL+NGSP RG+RQGDPLSP+LF+L + L+ ++K +
Sbjct: 223 WIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASS 282
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
G IG P ++HLQFADD+L + N +AL+ ++E SG K+N KS+
Sbjct: 283 GDIRGVRIGNGAP-AITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSL 341
Query: 121 LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
+ G + S ++L+ YL +P ++ + I++R+K R + W+
Sbjct: 342 ITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWS 401
Query: 180 SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
++FLS G+ +LLKSV ++PVYA+S FK P GI+S I+SL +NF+ + + R I
Sbjct: 402 AKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFW---WEKASNKRGIP 458
Query: 240 WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGRLE 299
W++W+ + K+ GGLG R L +FN ALL K WR++ L+ RV+ ARY + ++
Sbjct: 459 WVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIID 518
Query: 300 VGGRSVSCW-WSE----VRRLRDG----VGDG 322
RS + WS + LR G +GDG
Sbjct: 519 AKTRSQQSYGWSSLLSGIALLRKGTRYVIGDG 550
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 187 bits (474), Expect = 1e-45
Identities = 116/350 (33%), Positives = 181/350 (51%), Gaps = 18/350 (5%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI C++T VL+NG P +RGLRQGDPLSP+LF+L E L ++
Sbjct: 386 WISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQ 445
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
L +G + +P VSHL FADD+L + + L +E++SG ++NF KS
Sbjct: 446 NLITGIKVATPSP-AVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSS 504
Query: 121 L-VGVNIGSSWLYEAASVLSCK--VGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSG 177
+ G + S + +L G+ +L L +GG+ ++ + + +R++SR++G
Sbjct: 505 IQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKV--FSFVRDRLQSRING 562
Query: 178 WNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRK 237
W+++FLS GG+ V++KSV +LP Y +S F+ P I S + S F+ G D+R
Sbjct: 563 WSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNG---DSRG 619
Query: 238 ISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGR 297
+ W++W +C K GGLG R + +FN ALL K WR++ L+ +V RY
Sbjct: 620 MHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNP 679
Query: 298 LE-VGGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
L+ + S S W + R V G +++RVG G S W+D
Sbjct: 680 LDSIKSYSPSYGWRSMISARSLVYKG--------LIKRVGSGASISVWND 721
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 184 bits (468), Expect = 6e-45
Identities = 122/358 (34%), Positives = 186/358 (51%), Gaps = 32/358 (8%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI CV++ + SVL+NG P RG+RQGDPLSP LF+L E L ++ +A
Sbjct: 580 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQA 639
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
+G + V+HL FADDTLL+ + L L + +SG +N +KS
Sbjct: 640 GKITGIQF-QDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSA 698
Query: 121 LV-GVNIG---SSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
+ G N+ W+ ++ S +S + G +L L + G+ R L + I +++SRL+
Sbjct: 699 ITFGKNVDIQIKDWI-KSRSGISLEGGTGKYLGLPECLSGSKRDLFGF--IKEKLQSRLT 755
Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
GW ++ LS GG+ VLLKS+ +LPVY +S FK P + + ++ ++F+ + R
Sbjct: 756 GWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNS---MQQKR 812
Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
KI WLSWQ + L K+ GG G + L+ FN ALL K WR+L ++G L+ RV +RY
Sbjct: 813 KIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSD 872
Query: 297 RLEV--GGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRR-----VGDGVVTSFWSDR 347
L G R W S + FG ++L + +G+G T W+D+
Sbjct: 873 FLSATRGSRPSYAWRSIL--------------FGRELLMQGLRTVIGNGQKTFVWTDK 916
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 184 bits (468), Expect = 6e-45
Identities = 122/358 (34%), Positives = 186/358 (51%), Gaps = 32/358 (8%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI CV++ + SVL+NG P RG+RQGDPLSP LF+L E L ++ +A
Sbjct: 601 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQA 660
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
+G + V+HL FADDTLL+ + L L + +SG +N +KS
Sbjct: 661 GKITGIQF-QDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSA 719
Query: 121 LV-GVNIG---SSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
+ G N+ W+ ++ S +S + G +L L + G+ R L + I +++SRL+
Sbjct: 720 ITFGKNVDIQIKDWI-KSRSGISLEGGTGKYLGLPECLSGSKRDLFGF--IKEKLQSRLT 776
Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
GW ++ LS GG+ VLLKS+ +LPVY +S FK P + + ++ ++F+ + R
Sbjct: 777 GWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNS---MQQKR 833
Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
KI WLSWQ + L K+ GG G + L+ FN ALL K WR+L ++G L+ RV +RY
Sbjct: 834 KIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSD 893
Query: 297 RLEV--GGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRR-----VGDGVVTSFWSDR 347
L G R W S + FG ++L + +G+G T W+D+
Sbjct: 894 FLSATRGSRPSYAWRSIL--------------FGRELLMQGLRTVIGNGQKTFVWTDK 937
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 181 bits (459), Expect = 6e-44
Identities = 120/347 (34%), Positives = 184/347 (52%), Gaps = 20/347 (5%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WIK + T+ ++VL+NG P K+GLRQGDPLSP+LF+L A+ V++ L+E
Sbjct: 612 WISWIKSLLQTSKSAVLLNGIPGKWINCKKGLRQGDPLSPYLFILVAD----VLQRLLEK 667
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
+ I P +Q+ADDTL++ +V ALR+ L+ F +GL++NF KS
Sbjct: 668 NFQIRHPIYQDRPCAT--IQYADDTLVICRAEEDDVLALRSTLLQFSKATGLQINFAKST 725
Query: 121 LVGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNS 180
++ ++I S + +L CK+ +P YL +P+ + +PIV ++ S L+GW +
Sbjct: 726 MISLHIDRSKESSLSELLQCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEA 785
Query: 181 RFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISW 240
LS RL+L+ +VL+S+PVYA+S FK P +I +ID FF G + +
Sbjct: 786 SLLSQAERLILVNAVLSSVPVYAMSAFKLPPKVIEAIDKRRRAFFWTGDDTCSGAKCL-- 843
Query: 241 LSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGRLEV 300
++W VC KE GGLG++ LK N ALL K + + D W + + E GR +
Sbjct: 844 VAWDEVCTAKEKGGLGIKSLKTQNEALLLKRLFNLFSDNSS-WTNWI---WKEFDGRSLL 899
Query: 301 GGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSDR 347
+ WS ++L + F + +GDG TSFW DR
Sbjct: 900 KSLPLGQHWSVFQKLLPEL-------FKITTV-HIGDGSRTSFWHDR 938
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 179 bits (454), Expect = 2e-43
Identities = 117/347 (33%), Positives = 170/347 (48%), Gaps = 14/347 (4%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI V + +V VN F ++GLRQGDPLSP LF L + L I+++ +
Sbjct: 1318 WCDWIDSIVRGGSVAVKVNDEIGSYFQTRKGLRQGDPLSPILFNLVVDMLAILIQRAKDQ 1377
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
F G + +S LQ+ADDT+L R L+ L FE +S LK+NF+KS
Sbjct: 1378 GRFKGVVPHLVDN-GLSILQYADDTILFMDHDLDEARDLKLVLSTFEKLSSLKINFYKSE 1436
Query: 121 LVGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNS 180
L +E + C PF YL + + W+ + RI+ +LS W
Sbjct: 1437 LFCYGKAKDVEHEYVKLFGCDTEDYPFKYLGIRMHHKRINNKDWQGVEERIQKKLSSWKG 1496
Query: 181 RFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISW 240
+FLS GGRLVL+ SVL++L ++ LSFF+ P GI+ +D FF E +K
Sbjct: 1497 KFLSVGGRLVLINSVLSNLAIFMLSFFEIPKGILKKLDYYRSRFF---WQCDEHKKKYRL 1553
Query: 241 LSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGRLEV 300
W +C KECGGLG++ L+ N LL KW ++ L++ G+W +L +Y +V
Sbjct: 1554 ARWSVLCKPKECGGLGIQNLEIQNKCLLSKWLYK-LINEEGVWQDILRNKYLTKKTITQV 1612
Query: 301 GG-RSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
S +W+ + +RD GG+ +VGDG FW D
Sbjct: 1613 EKCPGDSHFWAGLMGVRDVFFKGGA--------FKVGDGSQIRFWED 1651
>ref|NP_912588.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|22748339|gb|AAN05341.1|
Putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 603
Score = 177 bits (450), Expect = 7e-43
Identities = 105/279 (37%), Positives = 150/279 (53%), Gaps = 5/279 (1%)
Query: 13 TASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEAQLFSGYSIGAAN 72
+ +V VN + F K+GLRQGDPLSP LF L A+ L+I+++ + F G I
Sbjct: 68 SVAVKVNDHIGNFFQTKKGLRQGDPLSPILFNLVADMLSILIQRAKDQGRFQGV-IPHLV 126
Query: 73 PIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSMLVGVNIGSSWLY 132
+S LQ+ADDT+L V+ L+ L FE ++GLK+NFHKS L
Sbjct: 127 DNGLSILQYADDTILFMEHDLDEVKNLKLVLSTFEKLAGLKINFHKSELFCYGKSKFAEN 186
Query: 133 EAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNSRFLSFGGRLVLL 192
E + C+ G PF YL +P+ W+ I R + +LS W + LS GGRLVL+
Sbjct: 187 EYVMLFGCRSGTYPFRYLGIPMHHKKLSNKDWQIIEERFQRKLSSWKGKCLSVGGRLVLI 246
Query: 193 KSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISWLSWQTVCLKKEC 252
SVL+SL ++ LSFF+ P GI+ +D FF G RK W +C K+C
Sbjct: 247 NSVLSSLAMFMLSFFEVPKGILKKLDYYRSRFFWQSDG---HKRKYRLARWSVICTPKDC 303
Query: 253 GGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
GGLG++ L N LL KW ++ L++ G+W ++L +Y
Sbjct: 304 GGLGIQNLNVQNKCLLSKWLYK-LINEDGVWQKLLRKKY 341
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 176 bits (446), Expect = 2e-42
Identities = 119/349 (34%), Positives = 172/349 (49%), Gaps = 16/349 (4%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W I +CVST T + VNG ++ F +RGLRQGDPLSP+LFLL AEG + ++ E
Sbjct: 803 WVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEE 862
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKS- 119
G I P VSHL FADD+L+L + + L+ L ++E SG +N KS
Sbjct: 863 GRLHGIRICQGAP-SVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSA 921
Query: 120 MLVGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
++ N S + L+ + YL +P+ R + + RI R+ GW
Sbjct: 922 VMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWK 981
Query: 180 SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
+ LS G+ +L+K+V +P +A+ F+ + I + ++ E + K+
Sbjct: 982 EKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYW---WSNQEKDNKMH 1038
Query: 240 WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGRLE 299
WLSW + L K GGLG R + FNLA+L K WR++ D L RVL A+Y LG
Sbjct: 1039 WLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFR 1098
Query: 300 VGGRS-VSCWWSEVRR-LRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
S VS W +++ LR V G W RVGDG + W+D
Sbjct: 1099 PKQTSNVSYTWRSIQKGLR--VLQNGMIW-------RVGDGSKINIWAD 1138
>ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultivar-group)]
gi|39546208|emb|CAE04633.3| OSJNBa0028I23.15 [Oryza
sativa (japonica cultivar-group)]
Length = 593
Score = 176 bits (445), Expect = 3e-42
Identities = 119/352 (33%), Positives = 171/352 (47%), Gaps = 30/352 (8%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W KWI + V + +V VN + F K+GLRQGDPLSP LF L A+ L ++++ E
Sbjct: 53 WCKWIDQVVRGGSVAVKVNDEIGNFFQTKKGLRQGDPLSPLLFNLVADMLAVLIQRTSE- 111
Query: 61 QLFSGYSIGAANPIV---VSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFH 117
G G +V +S LQ+ADDT+L + + L+ L FE +SGLK+NFH
Sbjct: 112 ---HGKIHGVIPHLVDDGLSILQYADDTILFMEHDLEDAKNLKLVLSAFERLSGLKINFH 168
Query: 118 KSMLVGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSG 177
KS L+ E A + CK G YL +P+ W+ + R + RL
Sbjct: 169 KSELLCFGKAIEVEREYALLFGCKTGSYTLKYLGLPMHYRKLSNKDWKEVEERFQKRLGS 228
Query: 178 WNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRK 237
W + LS GGRLVL+ SVL+SL +Y LSFF+ P GII +D FF E +K
Sbjct: 229 WKGKLLSVGGRLVLINSVLSSLAMYMLSFFEVPKGIIKKLDYYRSRFF---WQSDEHKKK 285
Query: 238 ISWLSWQTVCLKKECGGLGVRKLKEFNLAL---LGKWCWRMLVDRGGLWYRVLVARYGEL 294
W +C KECGGLG++ L+ N L L K W+ L+ + L + ++ +
Sbjct: 286 YRLARWSVLCKPKECGGLGIQNLEVQNKCLLRGLAKLVWQNLLRKKYLAKKTIMQVQKQR 345
Query: 295 GGRLEVGGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
G S +W+ + ++D GS ++ DG+ FW D
Sbjct: 346 GD---------SHFWTGLMGVKDTFSSFGS--------FKLQDGLQIRFWED 380
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 175 bits (444), Expect = 3e-42
Identities = 119/351 (33%), Positives = 174/351 (48%), Gaps = 20/351 (5%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI CVS+ T SVL+N P L+RGLRQGDPLSPFLF+L EGL ++
Sbjct: 568 WVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWE 627
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
G P +V HL FADD+L L S L+ L ++ +G +N +KS
Sbjct: 628 GALEGIQFSENGP-MVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKS- 685
Query: 121 LVGVNIGSSWLYEAASVLSCKVGIV----PFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
+ G + + +GI YL +P + ++ + +R+K +L
Sbjct: 686 --SITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLD 743
Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
W +R LS GG+ VLLKSV ++PV+A+S FK P +++S +F+ + +R
Sbjct: 744 VWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFW---WDSCDHSR 800
Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
KI W SW+ +CL K+ GGLG R ++ FN ALL K WR+L L R+L +RY +
Sbjct: 801 KIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATD 860
Query: 297 RLEVG-GRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
L+ + S W + R+ + G + +RVGDG W D
Sbjct: 861 FLDAALSQRPSFGWRSILFGRELLSKG--------LQKRVGDGASLFVWID 903
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 175 bits (444), Expect = 3e-42
Identities = 119/351 (33%), Positives = 174/351 (48%), Gaps = 20/351 (5%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI CVS+ T SVL+N P L+RGLRQGDPLSPFLF+L EGL ++
Sbjct: 565 WVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWE 624
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
G P +V HL FADD+L L S L+ L ++ +G +N +KS
Sbjct: 625 GALEGIQFSENGP-MVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKS- 682
Query: 121 LVGVNIGSSWLYEAASVLSCKVGIV----PFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
+ G + + +GI YL +P + ++ + +R+K +L
Sbjct: 683 --SITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLD 740
Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
W +R LS GG+ VLLKSV ++PV+A+S FK P +++S +F+ + +R
Sbjct: 741 VWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFW---WDSCDHSR 797
Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
KI W SW+ +CL K+ GGLG R ++ FN ALL K WR+L L R+L +RY +
Sbjct: 798 KIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATD 857
Query: 297 RLEVG-GRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
L+ + S W + R+ + G + +RVGDG W D
Sbjct: 858 FLDAALSQRPSFGWRSILFGRELLSKG--------LQKRVGDGASLFVWID 900
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 175 bits (443), Expect = 4e-42
Identities = 110/346 (31%), Positives = 173/346 (49%), Gaps = 13/346 (3%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WIK CV + +NG TD F RGLRQGDPLSP LF L ++ L ++ S
Sbjct: 1229 WVNWIKTCVMGGRVCININGERTDFFRTFRGLRQGDPLSPLLFNLISDALAAMLDSAKRE 1288
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
+ SG + P ++HLQ+ADDT+L + + A + L FE M+ LKVN+HKS
Sbjct: 1289 GVLSGL-VPDIFPGGITHLQYADDTVLFVANDDKQIVATKFILYCFEEMAVLKVNYHKSE 1347
Query: 121 LVGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNS 180
+ + + + A + +C VG P YL +PIG + ++ + +++ RL+ W +
Sbjct: 1348 IFTLGLSDNDTNRVAMMFNCPVGQFPMKYLGLPIGPDKILNLGFDFLGQKLEKRLNSWGN 1407
Query: 181 RFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISW 240
LS GR V + + L+S+P YA+ F++ P G+ S+ ++ + K
Sbjct: 1408 N-LSHAGRAVQINTCLSSIPSYAMCFYQLPEGVHQKFGSIRGRYY---WARNRLKGKYHM 1463
Query: 241 LSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGRLEV 300
+ W+ + K+ GGLG + + N ALL KW ++ + L +L +Y + GG +
Sbjct: 1464 VKWEDLAFPKDYGGLGFTETRRMNTALLAKWIMKIESEDDSLCIELLRRKYLQDGGFFQC 1523
Query: 301 GGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
R S +W + +R + GS W +VGDG SFW D
Sbjct: 1524 KERYASQFWKGLLNIRRWL-SLGSVW-------QVGDGSHISFWRD 1561
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 170 bits (430), Expect = 1e-40
Identities = 100/295 (33%), Positives = 156/295 (51%), Gaps = 11/295 (3%)
Query: 1 WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
W WI C++T T S+L+NG P KRG+RQGDP+SP+L+LL EGL+ ++++ ++A
Sbjct: 57 WCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKA 116
Query: 61 QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
+ G+ P +SHL FA D+L+ + L L L+E SG VNF KS
Sbjct: 117 KQLHGFKASRNGP-AISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSA 175
Query: 121 LVGVNIGSSWLYEAASVLSCKVGIVPF----LYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
++ G + + LS +GI YL +P + + I + ++
Sbjct: 176 IL---FGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMD 232
Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
W ++ LS G+ VL+KS++T++P Y++S F P +I I S F+ ++
Sbjct: 233 NWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFW---WSNTKVKH 289
Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
KI W++W + K+ GGL +R LK+FN+ALL K WR+L L RV A+Y
Sbjct: 290 KIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKY 344
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.348 0.155 0.570
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,005,126,102
Number of Sequences: 2540612
Number of extensions: 41173006
Number of successful extensions: 146180
Number of sequences better than 10.0: 733
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 144495
Number of HSP's gapped (non-prelim): 1018
length of query: 624
length of database: 863,360,394
effective HSP length: 134
effective length of query: 490
effective length of database: 522,918,386
effective search space: 256230009140
effective search space used: 256230009140
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 78 (34.7 bits)
Medicago: description of AC134967.10