BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134822.5 - phase: 0
(195 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_916849.1| retrovirus-related pol polyprotein from transpo... 110 2e-23
ref|XP_470528.1| Putative retrovirus-related pol polyprotein [Or... 110 2e-23
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 110 3e-23
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 110 3e-23
gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cult... 105 7e-22
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 102 5e-21
emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana] ... 101 1e-20
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 99 7e-20
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 97 2e-19
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 97 2e-19
emb|CAA37918.1| unnamed protein product [Arabidopsis thaliana] g... 96 6e-19
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 95 1e-18
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 94 2e-18
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] gi|99721|pir|... 94 2e-18
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 94 3e-18
gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis ... 92 8e-18
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu... 92 8e-18
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 92 8e-18
gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cult... 91 1e-17
emb|CAA37924.1| unnamed protein product [Arabidopsis thaliana] g... 90 3e-17
>ref|NP_916849.1| retrovirus-related pol polyprotein from transposon TNT 1-94-like
[Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 110 bits (276), Expect = 2e-23
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 7/154 (4%)
Query: 2 KVLQKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKAL 61
K+ Y +KSL + LKQQLY +M E + + + FN+++ DL+ ++VN+ DEDKA+
Sbjct: 88 KLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVNLYDEDKAI 147
Query: 62 LLLCSLPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKSKDLRANENS--EGLCVSR 119
+LLCSLP S+EH T+ +GK+ T EEI S+L + L +SK A E S E L V
Sbjct: 148 ILLCSLPPSYEHVVTTLTHGKD-TIKTEEIISSLLARDLRRSKKNEAMEASQAESLLVKA 206
Query: 120 GNGGGRGNRGSSKSGNKERYKCFKCHKFGHFKRD 153
+ G SKS N++ +C+KCH+FGH +R+
Sbjct: 207 KHD---HEAGVSKS-NEKGARCYKCHEFGHIRRN 236
>ref|XP_470528.1| Putative retrovirus-related pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|27436748|gb|AAO13467.1| Putative
retrovirus-related pol polyprotein [Oryza sativa
(japonica cultivar-group)]
Length = 556
Score = 110 bits (275), Expect = 2e-23
Identities = 62/154 (40%), Positives = 92/154 (59%), Gaps = 7/154 (4%)
Query: 2 KVLQKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKAL 61
K+ Y +KSL + LKQQLY +M E + + + FN+++ DL+ ++V ++DEDKA+
Sbjct: 219 KLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAI 278
Query: 62 LLLCSLPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKSKDLRANENS--EGLCVSR 119
+LLCSLP SFEH T+ +GK+ T EEI S+L + L +SK A E S E L V
Sbjct: 279 ILLCSLPPSFEHVVTTLTHGKD-TVKTEEIISSLLARDLRRSKKNEAMEASQAESLLVKA 337
Query: 120 GNGGGRGNRGSSKSGNKERYKCFKCHKFGHFKRD 153
+ G S + G +C+KCH+FGH +R+
Sbjct: 338 KHDHEAGVSKSKEKG----ARCYKCHEFGHIRRN 367
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 110 bits (274), Expect = 3e-23
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 20/196 (10%)
Query: 1 MKVL-QKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDK 59
+KVL Q + KSL +R LKQ+LY +KM E+ ++ E + +F K++ DL N++V + DED+
Sbjct: 105 IKVLDQLFMAKSLPNRIYLKQRLYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQ 164
Query: 60 ALLLLCSLPKSFEHFKDTILYGKEGTTTLEEIQSALRTK--KLTKSKDLRANENSEGLCV 117
A++LL SLP+ F+ K+T+ Y K T LEEI SA+R+K +L S L N NS+GL V
Sbjct: 165 AIVLLMSLPRQFDQLKETLKYCKT-TLHLEEITSAIRSKILELGASGKLLKN-NSDGLFV 222
Query: 118 -SRGNGGGRG---NRGSSKSGNKERYK-CFKCHKFGHFKRDF----------SEDNENFA 162
RG RG N+ S+S +K K C+ C K GHFK+ S A
Sbjct: 223 QDRGRSETRGKGPNKNKSRSKSKGAGKTCWICGKEGHFKKQCYVWKERNKQGSTSERGEA 282
Query: 163 QVVSEEYEDAGALVVS 178
V+ DA ALVVS
Sbjct: 283 STVTARVTDAAALVVS 298
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25412027|pir||G84599 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 838
Score = 110 bits (274), Expect = 3e-23
Identities = 62/160 (38%), Positives = 96/160 (59%), Gaps = 9/160 (5%)
Query: 1 MKVLQK-YKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDK 59
++VL K + KSL +R LKQ+LY +KM +S +I E + +F K++ DL N++V++ DED+
Sbjct: 97 IRVLDKLFMAKSLPNRIYLKQRLYGYKMSDSMTIEENVNDFFKLISDLENVKVSVPDEDQ 156
Query: 60 ALLLLCSLPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKSKDLRANENSEGLCVSR 119
A++LL SLPK F+ KDT+ YGK T L+EI A+R+K L + +NS +
Sbjct: 157 AIVLLMSLPKQFDQLKDTLKYGKT-TLALDEITGAIRSKVLELGASGKMLKNSSDALFVQ 215
Query: 120 GNG-------GGRGNRGSSKSGNKERYKCFKCHKFGHFKR 152
G N+ S+S ++E+ C+ C K GHFK+
Sbjct: 216 DRGRSEKRDKSSERNKSQSRSKSREKKVCWVCGKEGHFKK 255
>gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534554|ref|NP_921579.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 382
Score = 105 bits (262), Expect = 7e-22
Identities = 58/154 (37%), Positives = 93/154 (59%), Gaps = 7/154 (4%)
Query: 2 KVLQKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKAL 61
K+ + +KSL + LKQQLY ++ E + + + FN+++ DL+ ++V ++DEDKA+
Sbjct: 88 KLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAI 147
Query: 62 LLLCSLPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKSKDLRANENSEG--LCVSR 119
+LLCSLP S+EH T+ +GK+ T EEI S+L + L +SK A + S+G L V
Sbjct: 148 ILLCSLPLSYEHVVTTLTHGKD-TVKTEEIISSLLARDLRRSKKNEATKASQGKSLLVKD 206
Query: 120 GNGGGRGNRGSSKSGNKERYKCFKCHKFGHFKRD 153
+ G S + G +C+KCH+FGH +R+
Sbjct: 207 KHDHEAGVSKSKEKG----ARCYKCHEFGHIRRN 236
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 102 bits (255), Expect = 5e-21
Identities = 68/201 (33%), Positives = 106/201 (51%), Gaps = 22/201 (10%)
Query: 7 YKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLLCS 66
Y +K+L ++ LK+QLY+ M E + L FN ++ LAN+ V +E+EDKA+LLL S
Sbjct: 92 YMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNS 151
Query: 67 LPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKSKDLRANENSEGLCVSRGNG---- 122
LP S+++ TIL+GK T L+++ SAL L K + EN ++ G G
Sbjct: 152 LPSSYDNLATTILHGKT-TIELKDVTSAL----LLNEKMRKKPENQGQALITEGRGRSYQ 206
Query: 123 ------GGRGNRGSSKSGNKERYK-CFKCHKFGHFKRDFSEDNENFAQVVSEEYEDAGAL 175
G G RG SK+ +K R + C+ C++ GHFKRD + + ++ +D A
Sbjct: 207 RSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAA 266
Query: 176 VVS------CWEDDEGEVSHL 190
+V + ++E E HL
Sbjct: 267 MVQNNDNVVLFINEEEECMHL 287
>emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana]
gi|4539406|emb|CAB40039.1| putative retrotransposon
[Arabidopsis thaliana] gi|7444416|pir||T04181
hypothetical protein F7L13.40 - Arabidopsis thaliana
Length = 1230
Score = 101 bits (252), Expect = 1e-20
Identities = 63/156 (40%), Positives = 97/156 (61%), Gaps = 13/156 (8%)
Query: 7 YKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLLCS 66
Y +K+L +R LKQ+LYS+KM E+ S+ + EF +++ DL N V + DED+A+LLL S
Sbjct: 105 YMSKALPNRIYLKQKLYSYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMS 164
Query: 67 LPKSFEHFKDTILYGKEGTT-TLEEIQSALRTKKL---TKSKDLRANENSEGLCV----- 117
LPK F+ KDT+ YG TT +++E+ +A+ +K+L + K +R +EGL V
Sbjct: 165 LPKQFDQLKDTLKYGSGRTTLSVDEVVAAIYSKELELGSNKKSIRG--QAEGLYVKDKPE 222
Query: 118 SRG--NGGGRGNRGSSKSGNKERYKCFKCHKFGHFK 151
+RG +GN+G S+S +K C+ C + GHFK
Sbjct: 223 TRGMSEQKEKGNKGRSRSRSKGWKGCWICGEEGHFK 258
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 99.0 bits (245), Expect = 7e-20
Identities = 57/160 (35%), Positives = 94/160 (58%), Gaps = 7/160 (4%)
Query: 7 YKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLLCS 66
Y +K+L +R KQ+LYSFKM E+ S+ + EF +I+ DL N+ V + DED+A+LLL +
Sbjct: 107 YMSKALPNRIYPKQKLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTA 166
Query: 67 LPKSFEHFKDTILYGK-EGTTTLEEIQSALRTKKLTKSKDLRA-NENSEGLCV-----SR 119
LPK+F+ KDT+ Y + TL+E+ +A+ +K+L ++ +EGL V ++
Sbjct: 167 LPKAFDQLKDTLKYSSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENK 226
Query: 120 GNGGGRGNRGSSKSGNKERYKCFKCHKFGHFKRDFSEDNE 159
G G +G K +K++ C+ C + GHF+ N+
Sbjct: 227 GKGEQKGKGKGKKGKSKKKPGCWTCGEEGHFRSSCPNQNK 266
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411934|pir||G84581 copia-like retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1137
Score = 97.4 bits (241), Expect = 2e-19
Identities = 63/188 (33%), Positives = 108/188 (56%), Gaps = 12/188 (6%)
Query: 7 YKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLLCS 66
Y KSL +R L+ ++Y+++M +SK++ E + EF K++ DL N+++ + DE +A+L+L +
Sbjct: 77 YLVKSLPNRVYLQLKVYNYRMQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSA 136
Query: 67 LPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKL-TKSKDLRANENSEGLCVSRGNGGGR 125
LP S++ K+T+ YG+EG L+++ SA ++K+L + + EGL V RG R
Sbjct: 137 LPDSYDMLKETLKYGREG-IKLDDVISAAKSKELELRDSSGGSRPVGEGLYV-RGKSQAR 194
Query: 126 GNRGSSKSGNKERYKCFKCHKFGHFKRD----FSEDNENFA---QVVSEEYEDAGALVVS 178
G+ G + K+ C+ C K GHFKR ++ N A +V ++ +D LV S
Sbjct: 195 GSDGPKSTEGKK--VCWICGKEGHFKRQCYKWLEKNKANGAGETALVKDDAQDLVGLVAS 252
Query: 179 CWEDDEGE 186
EG+
Sbjct: 253 EVNMSEGK 260
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301702|pir||E84601 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 97.1 bits (240), Expect = 2e-19
Identities = 73/199 (36%), Positives = 110/199 (54%), Gaps = 14/199 (7%)
Query: 3 VLQK-YKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKAL 61
VL K Y +K+L +R KQ+LYSFKM E+ SI + EF +I+ DL N V + DED+A+
Sbjct: 102 VLDKLYMSKALPNRIYQKQKLYSFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAI 161
Query: 62 LLLCSLPKSFEHFKDTILYG-KEGTTTLEEIQSALRTKKLTKSKDLRA-NENSEGLCV-- 117
LLL SLPK F+ +DT+ YG T +L+E+ +A+ +K+L + ++ +EGL V
Sbjct: 162 LLLMSLPKPFDQLRDTLKYGLGRVTLSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKE 221
Query: 118 ---SRGNGGGRGNRGSS-KSGNKERYK--CFKCHKFGHFKRDFSEDNENFAQVVSEEYED 171
+RG RGN ++ KS +K R K C+ C + + ++SE N + VSE
Sbjct: 222 KTETRGRTEQRGNNNNNKKSRSKSRSKKGCWICGESSNGSSNYSEANGLY---VSEALSS 278
Query: 172 AGALVVSCWEDDEGEVSHL 190
+ W D G H+
Sbjct: 279 TDIHLEDEWVMDTGCSYHM 297
>emb|CAA37918.1| unnamed protein product [Arabidopsis thaliana] gi|99727|pir||S23313
hypothetical protein 1 - Arabidopsis thaliana
retrotransposon Ta1-2 (strain Kashmir) (fragment)
Length = 560
Score = 95.9 bits (237), Expect = 6e-19
Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 24/209 (11%)
Query: 5 QKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLL 64
++Y SL +R ++ + YSFKM +SKSI+E + EF KI+ +L+++E+N+ +E +A+L L
Sbjct: 109 KQYMETSLPNRIYVQLKFYSFKMNDSKSINENVNEFLKIVAELSSLEINVVEEVRAILFL 168
Query: 65 CSLPKSFEHFKDTILYGKEGTTTLEEIQSALR-TKKLTKSKDLRAN------ENSEGLCV 117
L + K T+ YG + + + I SA ++L + K+ N N G +
Sbjct: 169 NGLSSRYSQLKHTLKYGNKALSLQDVISSARSLERELDEQKETDKNTSTVLYTNERGRPL 228
Query: 118 SRG---NGGGRGNRGSSKSGNKERYKCFKCHKFGHFKRD-------FSEDNENFAQVVSE 167
+R N GG+G RG SKS + + C+ C K GH K+D +N A V++E
Sbjct: 229 TRNQNQNKGGQG-RGRSKSNSNAKLTCWYCKKEGHVKKDCFARKRKLESENPGEAGVITE 287
Query: 168 EYEDAGALVVS------CWEDDEGEVSHL 190
+ + AL V+ WE D G SH+
Sbjct: 288 KLVFSEALSVNDLAVRDIWELDSGCPSHM 316
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 94.7 bits (234), Expect = 1e-18
Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 30/205 (14%)
Query: 1 MKVLQKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKA 60
+K+ Q TK L + LKQ L+ K+ + S+ + L+ F +I+ DL ++EV ++ED
Sbjct: 292 LKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLG 351
Query: 61 LLLLCSLPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKS--KDLRANENSEGLCV- 117
L+LLCSLP S+ +F+DTILY ++ T TL+E+ AL K+ K +N +EGL V
Sbjct: 352 LILLCSLPSSYANFRDTILYSRD-TLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVW 410
Query: 118 -------------------SRGNGGGRGNRGSSKSGNKERYKCFKCHKF-------GHFK 151
RG RG S K ++ + F+C K G +
Sbjct: 411 GRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYV 470
Query: 152 RDFSEDNENFAQVVSEEYEDAGALV 176
++ E A VV++E DA LV
Sbjct: 471 PKGKKEEEGKAAVVTDEKSDAELLV 495
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 94.0 bits (232), Expect = 2e-18
Identities = 63/177 (35%), Positives = 98/177 (54%), Gaps = 12/177 (6%)
Query: 7 YKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLLCS 66
Y +K+L +R LKQ+LYSFKM E+ SI + EF I+ DL N+ V + DED+A+LLL S
Sbjct: 107 YMSKALPNRIYLKQKLYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMS 166
Query: 67 LPKSFEHFKDTILYGKEGTT-TLEEIQSALRTKKL---TKSKDLRANENSEGLCV----- 117
LPK F+ KDT+ Y T +L+E+ +A+ +++L + K ++ +EGL V
Sbjct: 167 LPKPFDQLKDTLKYSSGKTVLSLDEVAAAIYSRELEFGSVKKSIKG--QAEGLYVKDKAE 224
Query: 118 SRGNGGGRGNRGSSKSGNKERYKCFKCHKFGHFKRDFSEDNE-NFAQVVSEEYEDAG 173
+RG + +S +K + C+ C + GH K N+ F S + E +G
Sbjct: 225 NRGRSEQKDKGKGKRSKSKSKRGCWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSG 281
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana] gi|99721|pir||S05465
retrovirus-related polyprotein - Arabidopsis thaliana
retrotransposon Ta1-3
Length = 1291
Score = 94.0 bits (232), Expect = 2e-18
Identities = 64/209 (30%), Positives = 111/209 (52%), Gaps = 24/209 (11%)
Query: 5 QKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLL 64
++Y SL +R ++ + YSFKM ++KSI+E + EF KI+ +L+++E+N+ +E +A+L L
Sbjct: 121 KQYMETSLPNRIYVQLKFYSFKMNDTKSINENVNEFLKIVAELSSLEINVVEEVRAILFL 180
Query: 65 CSLPKSFEHFKDTILYGKEGTTTLEEIQSALRT--KKLTKSKD--------LRANENSEG 114
L + K T+ YG + +L+++ SA R+ ++L + K+ L NE S
Sbjct: 181 NRLSSRYSQLKHTLKYGNK-ALSLKDVISAARSLERELNEQKETDKNTSTVLYTNERSRP 239
Query: 115 LCVSRGNGGGRGNRGSSKSGNKERYKCFKCHKFGHFKRDF-------SEDNENFAQVVSE 167
++ + G RG SKS + + C+ C K GH K+D+ +N A V++E
Sbjct: 240 QTRNQNHNKGGQGRGRSKSNSNAKLTCWYCKKEGHVKKDYFARKRKLESENPGEAGVITE 299
Query: 168 EYEDAGALVVS------CWEDDEGEVSHL 190
+ + AL V+ W D G SH+
Sbjct: 300 KLVFSEALSVNDLAVRDIWVLDSGCTSHM 328
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 93.6 bits (231), Expect = 3e-18
Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 30/205 (14%)
Query: 1 MKVLQKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKA 60
+K+ Q TK L + LKQ+L+ K+ + S+ + L+ F +I+ DL ++EV +++D A
Sbjct: 85 LKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEKDLA 144
Query: 61 LLLLCSLPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKS--KDLRANENSEGLCVS 118
L+LLCSLP S+ +F+DTILY ++ T TL+E+ AL K+ K +N +EGL V
Sbjct: 145 LILLCSLPSSYANFRDTILYSRD-TLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVR 203
Query: 119 --------------------RGNGGGRGNRGSSKSGNKERYKCFKCHKF-------GHFK 151
RG RG S K ++ + KC K G +
Sbjct: 204 GSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYI 263
Query: 152 RDFSEDNENFAQVVSEEYEDAGALV 176
++ E A VV++E DA LV
Sbjct: 264 PKGKKEEEGKAAVVTDEKSDAELLV 288
>gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
gi|25301707|pir||E86490 hypothetical protein F28L22.3 -
Arabidopsis thaliana
Length = 1356
Score = 92.0 bits (227), Expect = 8e-18
Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 22/207 (10%)
Query: 5 QKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLL 64
+KY SL +R + +LYSFKM+ + +I + + EF +I+ +L ++E+ +++E +A+L+L
Sbjct: 113 KKYMETSLPNRIYTQLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILIL 172
Query: 65 CSLPKSFEHFKDTILYGKEGTTTLEEIQSALRT--KKLTKSKDLRANE------NSEGLC 116
SLP S K T+ YG + T T++++ S+ ++ ++L ++ DL + G
Sbjct: 173 NSLPASHIQLKHTLKYGNK-TLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRP 231
Query: 117 VSRGNGGGRGNRGSSKSGNKERYKCFKCHKFGHFKRD-------FSEDNENFAQVVSEEY 169
+ R N G +G S+S +K + C+ C K GH K+D + + A V++E+
Sbjct: 232 LVRNNQKGGQGKGRSRSNSKTKVPCWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEKL 291
Query: 170 EDAGALVVS------CWEDDEGEVSHL 190
+ AL V+ W D G SH+
Sbjct: 292 VFSEALSVNEQMVKDLWILDSGCTSHM 318
>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1211
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 30/205 (14%)
Query: 1 MKVLQKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKA 60
+K+ Q TK L + LKQ+L+ K+ + S+ + L+ F KI+ DL ++EV ++ED
Sbjct: 85 LKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKKIVADLESMEVKYDEEDLC 144
Query: 61 LLLLCSLPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKS--KDLRANENSEGLCVS 118
L+LLCSLP S+ +F+DTILY + T TL+E+ AL K+ K +N +EGL V
Sbjct: 145 LILLCSLPSSYANFRDTILYSCD-TLTLKEVYDALHAKEKIKKMVPSEGSNSQAEGLVVR 203
Query: 119 --------------------RGNGGGRGNRGSSKSGNKERYKCFKCHKF-------GHFK 151
RG RG S K ++ + +C K G +
Sbjct: 204 GRQQEKNTNSKSRDKSSSSYRGRSKSRGRYKSCKYYKRDGHDISECWKLQDKDKRTGKYV 263
Query: 152 RDFSEDNENFAQVVSEEYEDAGALV 176
++ E A VV++E DA LV
Sbjct: 264 PKGKKEEEGKAAVVTDEKSDAELLV 288
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 92.0 bits (227), Expect = 8e-18
Identities = 65/204 (31%), Positives = 103/204 (49%), Gaps = 18/204 (8%)
Query: 2 KVLQKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKAL 61
K+ Y +K+L ++ LK+QLY+ M E + L N ++ LAN+ V +E+EDK +
Sbjct: 88 KLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLNVLNGLITQLANLGVKIEEEDKRI 147
Query: 62 LLLCSLPKSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKSKDLRANENSEGLCVSRG- 120
+LL SLP S++ TIL+GK+ + L+++ SAL + + K N + SRG
Sbjct: 148 VLLNSLPSSYDTLSTTILHGKD-SIQLKDVTSALLLNEKMRKKP--ENHGQVFITESRGR 204
Query: 121 -------NGGGRGNRGSSKSGNKERYK-CFKCHKFGHFKRDFSEDNENFAQVVSEEYEDA 172
N G G RG SK +K + + C+ C + GHFKRD + ++ +D
Sbjct: 205 SYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQPGHFKRDCPNPKRGKGESSGQKNDDN 264
Query: 173 GALVVSCWED------DEGEVSHL 190
A +V +D +E E HL
Sbjct: 265 TAAMVQNNDDVVLLINEEEECMHL 288
>gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1241
Score = 91.3 bits (225), Expect = 1e-17
Identities = 68/200 (34%), Positives = 100/200 (50%), Gaps = 36/200 (18%)
Query: 9 TKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLLCSLP 68
TK L + LKQ+L+ K+ + S+ + L+ F +I+ DL ++EV ++ED L+LLCSLP
Sbjct: 2 TKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSLP 61
Query: 69 KSFEHFKDTILYGKEGTTTLEEIQSALRTKKLTKS--KDLRANENSEGLCV-SRGNGGGR 125
S+ +F+DTILY ++ T TL+E+ AL K+ K +N +EGL V R
Sbjct: 62 SSYANFRDTILYSRD-TLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNT 120
Query: 126 GNRGSSKSG--------NKERYK-CFKCHKFGHFKRDFSE-------------------- 156
N+ KS ++ RYK C C + GH D SE
Sbjct: 121 NNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGH---DISECWKLQDKDKRTRKYIPKGKK 177
Query: 157 DNENFAQVVSEEYEDAGALV 176
+ E A VV++E DA LV
Sbjct: 178 EEEGKAAVVTDEKSDAELLV 197
>emb|CAA37924.1| unnamed protein product [Arabidopsis thaliana] gi|99719|pir||S23319
hypothetical protein 2 - Arabidopsis thaliana
retrotransposon Ta1-2 (strain Landsberg) (fragment)
Length = 1084
Score = 90.1 bits (222), Expect = 3e-17
Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 24/209 (11%)
Query: 5 QKYKTKSLAHRQLLKQQLYSFKMLESKSISEQLAEFNKILDDLANIEVNMEDEDKALLLL 64
++Y SL +R ++ + YSFKM +SKSI+E + EF KI+ +L+++E+N+ +E +A+L L
Sbjct: 21 KQYMETSLPNRIYVQLKFYSFKMNDSKSINENVNEFLKIVAELSSLEINVVEEVRAILFL 80
Query: 65 CSLPKSFEHFKDTILYGKEGTTTLEEIQSALR-TKKLTKSKDLRANENSEGLCVSRG--- 120
L + K T+ YG + + + I SA ++L + K+ N ++ RG
Sbjct: 81 NGLSSRYSQLKHTLKYGNKALSLQDVISSARSLERELDEQKETDKNTSTVLYTNERGRPQ 140
Query: 121 ------NGGGRGNRGSSKSGNKERYKCFKCHKFGHFKRD-------FSEDNENFAQVVSE 167
N G+G RG SKS + + C+ C K GH K+D +N A V++E
Sbjct: 141 TRNQNQNKEGQG-RGISKSNSNAKLTCWYCKKEGHVKKDCFARKRKLESENPGEAGVITE 199
Query: 168 EYEDAGALVVS------CWEDDEGEVSHL 190
+ + AL V+ W D G SH+
Sbjct: 200 KLVFSEALSVNDLAVRDIWVLDSGCTSHM 228
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 325,766,029
Number of Sequences: 2540612
Number of extensions: 13767411
Number of successful extensions: 56884
Number of sequences better than 10.0: 552
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 346
Number of HSP's that attempted gapping in prelim test: 56269
Number of HSP's gapped (non-prelim): 716
length of query: 195
length of database: 863,360,394
effective HSP length: 121
effective length of query: 74
effective length of database: 555,946,342
effective search space: 41140029308
effective search space used: 41140029308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 71 (32.0 bits)
Medicago: description of AC134822.5