BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.2 + phase: 0 /pseudo
(840 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi... 116 4e-24
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 114 1e-23
pir||E96549 hypothetical protein F11M15.5 [imported] - Arabidops... 107 2e-21
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 100 3e-19
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 99 6e-19
emb|CAB79940.1| hypothetical protein [Arabidopsis thaliana] gi|2... 99 6e-19
dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|983838... 97 3e-18
dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris] 97 3e-18
gb|AAP54545.1| putative gag-pol precursor [Oryza sativa (japonic... 96 6e-18
ref|XP_462949.1| Putative retroelement [Oryza sativa] gi|1409185... 96 6e-18
emb|CAD41616.1| OSJNBa0091D06.19 [Oryza sativa (japonica cultiva... 96 6e-18
gb|AAV43845.1| putative polyprotein [Oryza sativa (japonica cult... 96 6e-18
gb|AAU44314.1| putative polyprotein [Oryza sativa (japonica cult... 95 1e-17
ref|XP_475948.1| putative polyprotein [Oryza sativa (japonica cu... 94 1e-17
ref|NP_917356.1| putative polyprotein [Oryza sativa (japonica cu... 94 1e-17
emb|CAD39933.2| OSJNBa0091C12.11 [Oryza sativa (japonica cultiva... 94 1e-17
gb|AAU90124.1| putative polyprotein [Oryza sativa (japonica cult... 94 1e-17
gb|AAP52876.1| putative retroelement [Oryza sativa (japonica cul... 94 2e-17
gb|AAX96572.1| transposon protein, putative, unclassified [Oryza... 94 2e-17
emb|CAE03836.3| OSJNBb0013J13.13 [Oryza sativa (japonica cultiva... 94 2e-17
>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411489|pir||H84506 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 889
Score = 116 bits (290), Expect = 4e-24
Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 650 LADFLVEMTAEK--GSMEAAKWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSS 707
LADF++++ G+ KW+L VDGSSN +GSG G+ L P G +IEQSL+ F +S
Sbjct: 622 LADFVIKLPLADLDGTNSNKKWLLHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNAS 681
Query: 708 NNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYLTQ 767
NN++EYEAL AG++LA + ++E+ A SDSQLV Q G ++ KD ++ YLE V L Q
Sbjct: 682 NNESEYEALIAGIKLAQEKGIREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQ 741
Query: 768 KFVSFK 773
+F SFK
Sbjct: 742 QFESFK 747
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 114 bits (285), Expect = 1e-23
Identities = 58/128 (45%), Positives = 87/128 (67%), Gaps = 3/128 (2%)
Query: 649 SLADFLVEMTAEKGSMEAAKWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSN 708
+LADF E+T + +W L VDGSSN + SGAGV LEGP +++EQ+++F+FK+SN
Sbjct: 1309 ALADFTAELTPYL-TERTPRWTLYVDGSSNSRSSGAGVVLEGPGEIVVEQAMKFEFKTSN 1367
Query: 709 NQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYLTQK 768
NQAEYEA+ AG+ LA+++ V + KSDS+LV Q+TG ++ ++ L Y V L +
Sbjct: 1368 NQAEYEAIIAGLHLAIELEVTNITCKSDSRLVVGQLTGEYEVRETLLQQYFHFVKNLLNR 1427
Query: 769 F--VSFKY 774
F +SF++
Sbjct: 1428 FKEISFQH 1435
>pir||E96549 hypothetical protein F11M15.5 [imported] - Arabidopsis thaliana
gi|4836930|gb|AAD30632.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 1295
Score = 107 bits (267), Expect = 2e-21
Identities = 57/114 (50%), Positives = 82/114 (71%), Gaps = 4/114 (3%)
Query: 650 LADFLVEM---TAEKGSMEAAKWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKS 706
LADFL+E+ TAE + + W+L VDG+S+ +GSGAGV L+ P G ++EQS R F +
Sbjct: 902 LADFLIELPLATAES-DVPSQPWILHVDGASSKQGSGAGVRLKLPTGEVLEQSFRLAFNA 960
Query: 707 SNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLE 760
SNN+AEYE+L AG+RLA+ V V+ L+A DSQLV Q +G+++ KD ++ YL+
Sbjct: 961 SNNEAEYESLLAGLRLAIGVGVRALQAHCDSQLVASQYSGDYEAKDSRMEAYLD 1014
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 100 bits (248), Expect = 3e-19
Identities = 51/127 (40%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 650 LADFLVEMTAEKGSMEAAK----WVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFK 705
+ADF++E + + G E ++ W L VDG+S GSG G+ L+ P G +EQ++R F
Sbjct: 431 MADFVLEYSRKPGQHEGSRKKEWWTLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFS 490
Query: 706 SSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYL 765
+SNN+AEYEA+ +G+ LAL + V +L SDSQLV + V ++ KD ++ YL V
Sbjct: 491 ASNNEAEYEAILSGLDLALALSVSKLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNT 550
Query: 766 TQKFVSF 772
Q+F +
Sbjct: 551 LQQFTEW 557
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 99.0 bits (245), Expect = 6e-19
Identities = 51/129 (39%), Positives = 80/129 (61%), Gaps = 5/129 (3%)
Query: 650 LADFLVEMTAEKGSMEAA-----KWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDF 704
LADFL+E+ + + +W L VDGSS+ +GSG G+ L P ++EQS R F
Sbjct: 1233 LADFLIELPLQSAERAVSGNRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRF 1292
Query: 705 KSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMY 764
++NN AEYE L AG+RLA + + + A +DSQL+ Q++G ++ K+ ++ YL+ V
Sbjct: 1293 VATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQL 1352
Query: 765 LTQKFVSFK 773
+T+ F +FK
Sbjct: 1353 MTKDFENFK 1361
>emb|CAB79940.1| hypothetical protein [Arabidopsis thaliana]
gi|2864621|emb|CAA16968.1| hypothetical protein
[Arabidopsis thaliana] gi|7485351|pir||T05406
hypothetical protein F10M6.140 - Arabidopsis thaliana
Length = 452
Score = 99.0 bits (245), Expect = 6e-19
Identities = 51/114 (44%), Positives = 77/114 (66%), Gaps = 1/114 (0%)
Query: 650 LADFLVEMTAEK-GSMEAAKWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSN 708
LADF+ E++ + + W+L DGSS+L+GS G+ L+ P ++EQSLR FK+SN
Sbjct: 189 LADFMTELSPDVIDVIPDENWILYSDGSSSLQGSSLGILLQSPTREILEQSLRLQFKASN 248
Query: 709 NQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESV 762
N+AEYEAL AG+RLA + K+++A SDSQLV + +G F+ K+ ++ +L V
Sbjct: 249 NEAEYEALLAGLRLAKGLGAKQIKAFSDSQLVVSRFSGEFEAKNERMRAHLSMV 302
>dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|9838386|ref|NP_063998.1|
hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 96.7 bits (239), Expect = 3e-18
Identities = 46/125 (36%), Positives = 79/125 (62%), Gaps = 2/125 (1%)
Query: 649 SLADFLVEMTAEKGSMEAAKWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSN 708
+LADF+VE + E+ W L+VDGS+ GSGAG+ + P G + E +++F K+SN
Sbjct: 177 ALADFIVEASYEEEEEPVGVWKLAVDGSAAQTGSGAGIIMTSPEGNVFEYAIKF--KASN 234
Query: 709 NQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYLTQK 768
N+AEYEA AG+++ + K++ ++DSQLV Q+ G ++ ++P + YL+ + L +
Sbjct: 235 NEAEYEAAIAGIKMCMAADAKKIRLQTDSQLVASQIRGEYEAREPAMQKYLQMIKDLAAQ 294
Query: 769 FVSFK 773
+S +
Sbjct: 295 LISLE 299
>dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 96.7 bits (239), Expect = 3e-18
Identities = 46/125 (36%), Positives = 79/125 (62%), Gaps = 2/125 (1%)
Query: 649 SLADFLVEMTAEKGSMEAAKWVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSN 708
+LADF+VE + E+ W L+VDGS+ GSGAG+ + P G + E +++F K+SN
Sbjct: 177 ALADFIVEASYEEEEEPVGVWKLAVDGSAAQTGSGAGIIMTSPEGNVFEYAIKF--KASN 234
Query: 709 NQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYLTQK 768
N+AEYEA AG+++ + K++ ++DSQLV Q+ G ++ ++P + YL+ + L +
Sbjct: 235 NEAEYEAAIAGIKMCMAADAKKIRLQTDSQLVASQIRGEYEAREPAMQKYLQMIKDLAAQ 294
Query: 769 FVSFK 773
+S +
Sbjct: 295 LISLE 299
>gb|AAP54545.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37535912|ref|NP_922258.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22324957|gb|AAM95684.1| putative GAG-POL precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1740
Score = 95.5 bits (236), Expect = 6e-18
Identities = 53/134 (39%), Positives = 78/134 (57%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMT----------AEKGSME---AAKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T A G + A WV+ DGS +L+G+GAGVTL P G +
Sbjct: 1135 ALADFVAEWTPAPEPVSIPEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDV 1194
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
++ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV+ +Q DPQ+
Sbjct: 1195 LKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQM 1254
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1255 DAYVRQVRRMERHF 1268
>ref|XP_462949.1| Putative retroelement [Oryza sativa] gi|14091854|gb|AAK53857.1|
Putative retroelement [Oryza sativa]
Length = 1541
Score = 95.5 bits (236), Expect = 6e-18
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMTAEKGSMEA-------------AKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T + A A WV+ DGS +L+G+GAGVTL P G +
Sbjct: 917 ALADFVAEWTPAPEPVSAPEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDV 976
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
+ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV +Q DPQ+
Sbjct: 977 LRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLRVLGDSQLVVNQVCKEYQCSDPQM 1036
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1037 DAYVRQVRRMERHF 1050
>emb|CAD41616.1| OSJNBa0091D06.19 [Oryza sativa (japonica cultivar-group)]
gi|50926924|ref|XP_473341.1| OSJNBa0091D06.19 [Oryza
sativa (japonica cultivar-group)]
Length = 1910
Score = 95.5 bits (236), Expect = 6e-18
Identities = 53/134 (39%), Positives = 78/134 (57%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMT----------AEKGSME---AAKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T A G + A WV+ DGS +L+G+GAGVTL P G +
Sbjct: 1340 ALADFVAEWTPAPEPVSIPEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDV 1399
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
++ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV+ +Q DPQ+
Sbjct: 1400 LKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQM 1459
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1460 DAYVRQVRRMERHF 1473
>gb|AAV43845.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1207
Score = 95.5 bits (236), Expect = 6e-18
Identities = 53/134 (39%), Positives = 78/134 (57%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMT----------AEKGSME---AAKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T A G + A WV+ DGS +L+G+GAGVTL P G +
Sbjct: 592 ALADFVAEWTPAPEPVSIPEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDV 651
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
++ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV+ +Q DPQ+
Sbjct: 652 LKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQM 711
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 712 DAYVRQVRRMERHF 725
>gb|AAU44314.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2027
Score = 94.7 bits (234), Expect = 1e-17
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMTAEKGSME-------------AAKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T ++ AA WV+ DGS +L+G+GAGVTL P G +
Sbjct: 1403 ALADFVAEWTPAPETVSIPEANTDPTQLPHAAHWVMQFDGSLSLQGAGAGVTLTSPNGDV 1462
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
+ +R DF+++NN AEYE L AG+R+A+ + ++ L DSQLV QV ++ DPQ+
Sbjct: 1463 LRYLVRLDFRATNNMAEYEGLLAGLRVAVGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQM 1522
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1523 DAYVRQVRRMERHF 1536
>ref|XP_475948.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475133|gb|AAT44202.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1514
Score = 94.4 bits (233), Expect = 1e-17
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMTAEKGSMEA-------------AKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T + A A WV+ DGS +L+G+GAGVTL P G +
Sbjct: 929 ALADFVAEWTPAPEPVSAPEASSGPTQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDV 988
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
+ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV +Q DPQ+
Sbjct: 989 LRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYQCSDPQM 1048
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1049 DAYVRQVRRMERHF 1062
>ref|NP_917356.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2028
Score = 94.4 bits (233), Expect = 1e-17
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMTA--EKGSM-----------EAAKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T E SM AA WV+ DGS +L+G+GAGVTL P G +
Sbjct: 1404 ALADFVAEWTPAPETVSMPEASTNPSQLPHAAHWVMQFDGSLSLQGAGAGVTLTSPNGDV 1463
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
+ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV ++ DPQ+
Sbjct: 1464 LRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQM 1523
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1524 DAYVRQVRRMERHF 1537
>emb|CAD39933.2| OSJNBa0091C12.11 [Oryza sativa (japonica cultivar-group)]
gi|50921851|ref|XP_471286.1| OSJNBa0091C12.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1992
Score = 94.4 bits (233), Expect = 1e-17
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMTA--EKGSM-----------EAAKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T E SM AA WV+ DGS +L+G+GAGVTL P G +
Sbjct: 1368 ALADFVAEWTPAPETVSMPEASTNPSQLPHAAHWVMQFDGSLSLQGAGAGVTLTSPNGDV 1427
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
+ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV ++ DPQ+
Sbjct: 1428 LRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQM 1487
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1488 DAYVRQVRRMERHF 1501
>gb|AAU90124.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1796
Score = 94.4 bits (233), Expect = 1e-17
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMTAEKGSMEA-------------AKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T + A A WV+ DGS +L+G+GAGVTL P G +
Sbjct: 1172 ALADFVAEWTPAPEPVSAPEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDV 1231
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
+ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV +Q DPQ+
Sbjct: 1232 LRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVRKEYQCSDPQM 1291
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1292 DAYVRQVRRMERHF 1305
>gb|AAP52876.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532574|ref|NP_920589.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217203|gb|AAK92547.1| Putative retroelement [Oryza
sativa]
Length = 1963
Score = 94.0 bits (232), Expect = 2e-17
Identities = 52/134 (38%), Positives = 77/134 (56%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMT----------AEKGSME---AAKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T A G ++ A WV+ DGS +L+G+GAGVTL P G +
Sbjct: 1339 ALADFVAEWTPAPEPVSVPEASSGPLQLPHTAYWVMQFDGSLSLQGAGAGVTLSSPSGDV 1398
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
+ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV ++ DPQ+
Sbjct: 1399 LRYLVRLDFRATNNTAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQM 1458
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1459 DAYVRQVRRMERHF 1472
>gb|AAX96572.1| transposon protein, putative, unclassified [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 94.0 bits (232), Expect = 2e-17
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMTAEKGSM-------------EAAKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T ++ + A WV+ DGS +L+G+GAGVTL P G +
Sbjct: 1403 ALADFVAEWTPAPETVSIPEASTDPSQLPQTAHWVMQFDGSLSLQGAGAGVTLTSPNGDV 1462
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
++ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV ++ DPQ+
Sbjct: 1463 LKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQM 1522
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1523 NAYVRQVRRMERHF 1536
>emb|CAE03836.3| OSJNBb0013J13.13 [Oryza sativa (japonica cultivar-group)]
gi|50930405|ref|XP_474730.1| OSJNBb0013J13.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1836
Score = 94.0 bits (232), Expect = 2e-17
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 13/134 (9%)
Query: 649 SLADFLVEMTAEKGSMEA-------------AKWVLSVDGSSNLKGSGAGVTLEGPYGVL 695
+LADF+ E T + A A WV+ DGS +L+G+GAGVTL P G +
Sbjct: 1212 ALADFVAEWTPAPEPVSAPEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDV 1271
Query: 696 IEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQL 755
+ +R DF+++NN AEYE L AG+R+A + ++ L DSQLV QV +Q DPQ+
Sbjct: 1272 LRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVANQVCKEYQCSDPQM 1331
Query: 756 LMYLESVMYLTQKF 769
Y+ V + + F
Sbjct: 1332 DAYVRQVRRMERHF 1345
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.358 0.156 0.572
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,150,164,851
Number of Sequences: 2540612
Number of extensions: 38969816
Number of successful extensions: 148579
Number of sequences better than 10.0: 582
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 147834
Number of HSP's gapped (non-prelim): 691
length of query: 840
length of database: 863,360,394
effective HSP length: 137
effective length of query: 703
effective length of database: 515,296,550
effective search space: 362253474650
effective search space used: 362253474650
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 80 (35.4 bits)
Medicago: description of AC134322.2