BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.16 - phase: 0
(690 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN41458.1| putative cleavage and polyadenylation specificity... 1136 0.0
gb|AAL66977.1| putative cleavage and polyadenylation specificity... 1134 0.0
gb|AAO66552.1| putative cleavage and polyadenylation specifity f... 1091 0.0
gb|AAH75564.1| Cleavage and polyadenylation specific factor 3, 7... 712 0.0
dbj|BAE01170.1| unnamed protein product [Macaca fascicularis] 709 0.0
dbj|BAE01022.1| unnamed protein product [Macaca fascicularis] 709 0.0
gb|AAY14858.1| unknown [Homo sapiens] gi|18044212|gb|AAH20211.1|... 709 0.0
ref|NP_061283.2| cleavage and polyadenylation specificity factor... 709 0.0
emb|CAA65151.1| Cleavage and Polyadenylation Specifity Factor pr... 709 0.0
ref|XP_216667.3| PREDICTED: similar to Cleavage and polyadenylat... 708 0.0
gb|AAH11654.1| Cleavage and polyadenylation specific factor 3, 7... 707 0.0
gb|AAF19420.1| cleavage and polyadenylation specificity factor 7... 706 0.0
dbj|BAD97207.1| cleavage and polyadenylation specific factor 3, ... 706 0.0
gb|AAH84286.1| LOC495111 protein [Xenopus laevis] 705 0.0
ref|XP_419942.1| PREDICTED: similar to Cleavage and Polyadenylat... 702 0.0
gb|AAH85402.1| Cleavage and polyadenylation specificity factor 3... 696 0.0
gb|AAT68111.1| cleavage and polyadenylation specificity factor 3... 696 0.0
ref|XP_540075.1| PREDICTED: hypothetical protein XP_540075 [Cani... 696 0.0
ref|XP_395515.2| PREDICTED: similar to GA20526-PA [Apis mellifera] 683 0.0
emb|CAH93488.1| hypothetical protein [Pongo pygmaeus] 669 0.0
>gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa
subunit [Arabidopsis thaliana]
gi|23297661|gb|AAN13003.1| putative cleavage and
polyadenylation specificity factor [Arabidopsis
thaliana] gi|15219848|ref|NP_176297.1| cleavage and
polyadenylation specificity factor, putative
[Arabidopsis thaliana] gi|30696512|ref|NP_849835.1|
cleavage and polyadenylation specificity factor,
putative [Arabidopsis thaliana]
gi|12323330|gb|AAG51638.1| putative cleavage and
polyadenylation specificity factor; 72745-70039
[Arabidopsis thaliana] gi|25353318|pir||G96635
hypothetical protein T7P1.15 [imported] - Arabidopsis
thaliana
Length = 693
Score = 1136 bits (2939), Expect = 0.0
Identities = 563/691 (81%), Positives = 635/691 (91%), Gaps = 7/691 (1%)
Query: 2 SSVKKRESNGGTINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMA 61
+S+K+RE I+R+ DQLIVTPLGAG+EVGRSCVYM+++GK +LFDCGIHP YSGMA
Sbjct: 6 TSLKRREQ---PISRDG-DQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMA 61
Query: 62 ALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYV 121
ALPYFDEIDPS++DVLLITHFH+DHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL+DYV
Sbjct: 62 ALPYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYV 121
Query: 122 KVSKVSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAG 181
KVSKVSV+DML+DEQDIN+SMDKIEVIDFHQTVEVNGI+FWCYTAGHVLGAAMFMVDIAG
Sbjct: 122 KVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG 181
Query: 182 VRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTIS 241
VR+LYTGDYSREEDRHLRAAE PQFSPD+CIIEST GVQ HQ RH REKRFTDVIHST++
Sbjct: 182 VRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVA 241
Query: 242 QGGRVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMND 301
QGGRVLIPA+ALGRAQELLLILDEYWANHP+L NIPIYYASPLAKKC+ VY+TY LSMND
Sbjct: 242 QGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMND 301
Query: 302 RIQN--AKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNS 359
RI+N A SNPF FKHIS L+SID F DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKN+
Sbjct: 302 RIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNA 361
Query: 360 CVIPGYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNP 419
C+IPGY+VEGTLAKTI+NEPKEVTLMNGL+APL+MQVHYISFSAHAD AQTS FL+EL P
Sbjct: 362 CIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 421
Query: 420 PNIILVHGAANEMGRLKQKLMTQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKT 479
PNIILVHG ANEM RLKQKL+T+F D NTKI+TPKNC+SVEMYFNS+K+AKTIG+LAEKT
Sbjct: 422 PNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKT 481
Query: 480 PEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIY 539
P+VG+TVSG+LVKKGFTYQIMAPD+LHVFSQLSTA VTQRITIP+ GAF VI+ RL++I+
Sbjct: 482 PDVGDTVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIF 541
Query: 540 ESVEPSVDEESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDL 599
ESVE S DEESG+P L VH+RVTVK ESEKH+SL W+SDPI+DMVSDS+VAL+LNI+R++
Sbjct: 542 ESVEFSTDEESGLPALKVHERVTVKQESEKHISLQWSSDPISDMVSDSIVALILNISREV 601
Query: 600 PKIV-AESDATKIEEENEKKTEKVMQALLNSLFGNVKVGENGKLIINIDGNVAELNKESG 658
PKIV E DA K EEEN KK EKV+ ALL SLFG+VK+GENGKL+I +DGNVA+L+KESG
Sbjct: 602 PKIVMEEEDAVKSEEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESG 661
Query: 659 EVESENEGLKERVRTAFRRIQSSVKPIPLSA 689
EVESE+ GLKERVR AF RIQS+VKPIPLSA
Sbjct: 662 EVESEHSGLKERVRVAFERIQSAVKPIPLSA 692
>gb|AAL66977.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 693
Score = 1134 bits (2933), Expect = 0.0
Identities = 562/691 (81%), Positives = 634/691 (91%), Gaps = 7/691 (1%)
Query: 2 SSVKKRESNGGTINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMA 61
+S+K+RE I+R+ DQLIVTPLGAG+EVGRSCVYM+++GK +LFDCGIHP YSGMA
Sbjct: 6 TSLKRREQ---PISRDG-DQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMA 61
Query: 62 ALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYV 121
ALPYFDEIDPS++DVLLITHFH+DHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL+DYV
Sbjct: 62 ALPYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYV 121
Query: 122 KVSKVSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAG 181
KVSKVSV+DML+DEQDIN+SMDKIEVIDFHQTVEVNGI+FWCYTAGHVLGAAMFMVDIAG
Sbjct: 122 KVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG 181
Query: 182 VRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTIS 241
VR+LYTGDYSREEDRHLRAAE PQFSPD+CIIEST GVQ HQ RH REKRFTDVIHST++
Sbjct: 182 VRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVA 241
Query: 242 QGGRVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMND 301
QGGRVLIPA+ALGRAQELLLILDEYWANHP+L NIPIYYASPLAKKC+ VY+TY LSMND
Sbjct: 242 QGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMND 301
Query: 302 RIQN--AKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNS 359
RI+N A SNPF FKHIS L+SID F DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKN+
Sbjct: 302 RIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNA 361
Query: 360 CVIPGYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNP 419
C+IPGY+VEGTLAKTI+NEPKEVTLMNGL+APL+MQVHYISFSAHAD AQTS FL+EL P
Sbjct: 362 CIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 421
Query: 420 PNIILVHGAANEMGRLKQKLMTQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKT 479
PNIILVHG ANEM RLKQKL+T+F D NTKI+TPKNC+SVEMYFNS+K+AKTIG+LAEKT
Sbjct: 422 PNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKT 481
Query: 480 PEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIY 539
P+VG+TVSG+LVKKGFTYQIMAPD+LHVFSQLSTA VTQRITIP+ GAF VI+ RL++I+
Sbjct: 482 PDVGDTVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIF 541
Query: 540 ESVEPSVDEESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDL 599
ESVE S DEESG+P L VH+RVTVK ESEKH+SL W+SDPI+DMVSDS+VAL+LNI+R++
Sbjct: 542 ESVEFSTDEESGLPALKVHERVTVKQESEKHISLQWSSDPISDMVSDSIVALILNISREV 601
Query: 600 PKIV-AESDATKIEEENEKKTEKVMQALLNSLFGNVKVGENGKLIINIDGNVAELNKESG 658
PKIV E DA K EEEN KK EKV+ ALL SLFG+VK+GENGKL+I +D NVA+L+KESG
Sbjct: 602 PKIVMEEEDAVKSEEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDSNVAQLDKESG 661
Query: 659 EVESENEGLKERVRTAFRRIQSSVKPIPLSA 689
EVESE+ GLKERVR AF RIQS+VKPIPLSA
Sbjct: 662 EVESEHSGLKERVRVAFERIQSAVKPIPLSA 692
>gb|AAO66552.1| putative cleavage and polyadenylation specifity factor [Oryza
sativa (japonica cultivar-group)]
gi|50920149|ref|XP_470435.1| putative cleavage and
polyadenylation specifity factor protein [Oryza sativa
(japonica cultivar-group)] gi|27573349|gb|AAO20067.1|
putative cleavage and polyadenylation specifity factor
protein [Oryza sativa (japonica cultivar-group)]
Length = 700
Score = 1091 bits (2822), Expect = 0.0
Identities = 537/684 (78%), Positives = 611/684 (88%), Gaps = 7/684 (1%)
Query: 6 KRESNGGTINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPY 65
KR+++GG DQLI+TPLGAGNEVGRSCVYM++KG+TVLFDCGIHP YSGMAALPY
Sbjct: 19 KRQASGG----REGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPY 74
Query: 66 FDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSK 125
FDEIDPST+DVLLITHFHLDHAASLPYFLEKTTFKGRVFMT+ATKAIY+LLLSDYVKVSK
Sbjct: 75 FDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSK 134
Query: 126 VSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL 185
VSV+DML+DEQDI RSMDKIEVIDFHQT+EVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL
Sbjct: 135 VSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVL 194
Query: 186 YTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGR 245
YTGDYSREEDRHL+AAE PQFSPD+CIIESTYGVQ HQPRH REKRFTDVIH+T+SQGGR
Sbjct: 195 YTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTTVSQGGR 254
Query: 246 VLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRIQN 305
VLIPA+ALGRAQELLLILDEYWANHPEL IPIYYASPLAKKC+ VY+TY SMN+RI+N
Sbjct: 255 VLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRN 314
Query: 306 --AKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIP 363
A+SNPF FKHI +L+SID F DVGPSVVMASPGGLQSGLSRQLFD WC+DKKNSCVIP
Sbjct: 315 QFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNSCVIP 374
Query: 364 GYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNII 423
GYVVEGTLAKTI+NEP+EVTL NGL+APLHMQVHYISFSAHAD QTS FL+EL PPNI+
Sbjct: 375 GYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSTFLDELQPPNIV 434
Query: 424 LVHGAANEMGRLKQKLMTQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVG 483
LVHG ANEM RLKQKL++QF N K++ PKNCQSVEMYF+S+KMAKTIG+LAEK PE G
Sbjct: 435 LVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMAKTIGRLAEKVPEAG 494
Query: 484 ETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVE 543
E+V+GLLVKKGFTYQIMAP+DL V++QLSTAN+TQRI +PYSG+F VI+ RLKQIYESVE
Sbjct: 495 ESVNGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFEVIKYRLKQIYESVE 554
Query: 544 PSVDEESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIV 603
S EES VP L+VH+RVT++ ESE +V+L W+SDPI+DMVSDSVVA+VLNI R+ PK+V
Sbjct: 555 SST-EESDVPTLIVHERVTIRLESESYVTLQWSSDPISDMVSDSVVAMVLNIGREGPKVV 613
Query: 604 AESDATKIEEENEKKTEKVMQALLNSLFGNVKVGENGKLIINIDGNVAELNKESGEVESE 663
+A K +EE E+ +KV+ AL+ SLFG+VKV E GKL+I++DG VA L+ SG VE E
Sbjct: 614 PVEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQVAHLDGRSGGVECE 673
Query: 664 NEGLKERVRTAFRRIQSSVKPIPL 687
N L+ER++TAFRRIQ +V+PIPL
Sbjct: 674 NATLRERIKTAFRRIQGAVRPIPL 697
>gb|AAH75564.1| Cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
tropicalis] gi|55741994|ref|NP_001006770.1| cleavage and
polyadenylation specific factor 3, 73kDa [Xenopus
tropicalis]
Length = 692
Score = 712 bits (1837), Expect = 0.0
Identities = 363/702 (51%), Positives = 489/702 (68%), Gaps = 25/702 (3%)
Query: 1 MSSVKKRESNGGTINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGM 60
MS +K ES I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM
Sbjct: 1 MSVKRKAES---AIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGM 57
Query: 61 AALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDY 120
ALPY D IDP+ +D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDY
Sbjct: 58 DALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDY 117
Query: 121 VKVSKVSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIA 180
VKVS +S DDMLY E D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IA
Sbjct: 118 VKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIA 177
Query: 181 GVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTI 240
GV++LYTGD+SR+EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +
Sbjct: 178 GVKLLYTGDFSRQEDRHLMAAEIPNVKPDILIIESTYGTHIHEKREEREARFCNTVHDIV 237
Query: 241 SQGGRVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMN 300
++GGR LIP +ALGRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MN
Sbjct: 238 NRGGRALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMN 297
Query: 301 DRI--QNAKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKN 358
D+I Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N
Sbjct: 298 DKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRN 357
Query: 359 SCVIPGYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELN 418
+I GY VEGTLAK I++EP+E+ M+G PL M V YISFSAH D QTS F+ L
Sbjct: 358 GVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALK 417
Query: 419 PPNIILVHGAANEMGRLKQKLMTQFADRN---TKILTPKNCQSVEMYFNSQKMAKTIGKL 475
PP++ILVHG NEM RLK L+ ++ D + ++ P+N ++V + F +K+AK +G L
Sbjct: 418 PPHVILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTLNFRGEKLAKVMGLL 477
Query: 476 AEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRL 535
A+K PE G+ +SG+LVK+ F Y I+ P DL ++ L+ + VTQ+ IPY+G F ++ +L
Sbjct: 478 ADKKPEQGQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQKQAIPYTGPFNLLSCQL 537
Query: 536 KQIYESVEP-SVDEESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLN 594
+Q+ VE V+E+ L V VTV ++ V L W ++P NDM +D+V+ ++L
Sbjct: 538 QQLTGDVEEIEVNEKDA---LRVFKAVTVVRDAGM-VYLEWVANPANDMYADTVITVILE 593
Query: 595 I--NRDLPKIVAESDATKIEEENEKKTEKVMQALLNSLFGN--VKVGENGKLIINIDGNV 650
+ N K VA + +++ + +K ++ +L +FG+ V + G + + +DG
Sbjct: 594 LQSNPKANKAVATRASKEVDMDAYRKR---LEMMLQDIFGDDCVNCEDAGSITVTVDGKS 650
Query: 651 AELNKESGEVE-----SENEGLKERVRTAFRRIQSSVKPIPL 687
A L+ E+ VE E+E L+E V+ A +R+ ++ P L
Sbjct: 651 AILSMETRTVEYEEGIDEDETLREMVQQAAQRLYDALCPASL 692
>dbj|BAE01170.1| unnamed protein product [Macaca fascicularis]
Length = 684
Score = 709 bits (1831), Expect = 0.0
Identities = 359/685 (52%), Positives = 479/685 (69%), Gaps = 18/685 (2%)
Query: 14 INRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST 73
I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 74 VDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLY 133
+D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 134 DEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 193
E D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 194 EDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYAL 253
EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +AL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
Query: 254 GRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPF 311
GRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 312 AFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTL 371
FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 304 VFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTL 363
Query: 372 AKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANE 431
AK I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NE
Sbjct: 364 AKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE 423
Query: 432 MGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSG 488
M RLK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG
Sbjct: 424 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 483
Query: 489 LLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDE 548
+LVK+ F Y I++P DL ++ L+ + V Q IPY+G F ++ +L+++ VE +
Sbjct: 484 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQ 543
Query: 549 ESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDA 608
E P L V +TV E V L W ++P NDM +D+V ++L + + PKI +
Sbjct: 544 EK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAV 598
Query: 609 TKIEEENEKKT-EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-- 663
K+ ++ E K ++ +L +FG + V ++ L + +DG A LN E+ VE E
Sbjct: 599 QKVSKKLEMHVYSKRLEIMLQDIFGEDCISVKDDSILSVTVDGKTANLNLETRTVECEEG 658
Query: 664 ---NEGLKERVRTAFRRIQSSVKPI 685
+E L+E V A +R+ ++ P+
Sbjct: 659 GEDDESLREMVELAAQRLYEALTPV 683
>dbj|BAE01022.1| unnamed protein product [Macaca fascicularis]
Length = 684
Score = 709 bits (1831), Expect = 0.0
Identities = 359/685 (52%), Positives = 479/685 (69%), Gaps = 18/685 (2%)
Query: 14 INRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST 73
I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 74 VDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLY 133
+D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 134 DEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 193
E D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 194 EDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYAL 253
EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +AL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
Query: 254 GRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPF 311
GRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 312 AFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTL 371
FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 304 VFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTL 363
Query: 372 AKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANE 431
AK I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NE
Sbjct: 364 AKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE 423
Query: 432 MGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSG 488
M RLK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG
Sbjct: 424 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 483
Query: 489 LLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDE 548
+LVK+ F Y I++P DL ++ L+ + V Q IPY+G F ++ +L+++ VE +
Sbjct: 484 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQ 543
Query: 549 ESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDA 608
E P L V +TV E V L W ++P NDM +D+V ++L + + PKI +
Sbjct: 544 EK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAV 598
Query: 609 TKIEEENEKKT-EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-- 663
K+ ++ E K ++ +L +FG + V ++ L + +DG A LN E+ VE E
Sbjct: 599 QKVSKKLEMHVYSKRLEIMLQDIFGEDCISVKDDSILSVTVDGKTANLNLETRTVECEEG 658
Query: 664 ---NEGLKERVRTAFRRIQSSVKPI 685
+E L+E V A +R+ ++ P+
Sbjct: 659 SEDDESLREMVELAAQRLYEALTPV 683
>gb|AAY14858.1| unknown [Homo sapiens] gi|18044212|gb|AAH20211.1| Cleavage and
polyadenylation specific factor 3, 73kDa [Homo sapiens]
gi|7706427|ref|NP_057291.1| cleavage and polyadenylation
specific factor 3, 73kDa [Homo sapiens]
gi|6002955|gb|AAF00224.1| cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
gi|18203503|sp|Q9UKF6|CPSF3_HUMAN Cleavage and
polyadenylation specificity factor, 73 kDa subunit (CPSF
73 kDa subunit)
Length = 684
Score = 709 bits (1830), Expect = 0.0
Identities = 360/685 (52%), Positives = 479/685 (69%), Gaps = 18/685 (2%)
Query: 14 INRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST 73
I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 74 VDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLY 133
+D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 134 DEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 193
E D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 194 EDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYAL 253
EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +AL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
Query: 254 GRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPF 311
GRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 312 AFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTL 371
FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 304 VFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTL 363
Query: 372 AKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANE 431
AK I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NE
Sbjct: 364 AKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE 423
Query: 432 MGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSG 488
M RLK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG
Sbjct: 424 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 483
Query: 489 LLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDE 548
+LVK+ F Y I++P DL ++ L+ + V Q IPY+G F ++ +L+++ VE +
Sbjct: 484 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQ 543
Query: 549 ESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDA 608
E P L V +TV E V L W ++P NDM +D+V ++L + + PKI +
Sbjct: 544 EK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAV 598
Query: 609 TKIEEENEKKT-EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-- 663
K+ ++ E K ++ +L +FG V V ++ L + +DG A LN E+ VE E
Sbjct: 599 QKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEG 658
Query: 664 ---NEGLKERVRTAFRRIQSSVKPI 685
+E L+E V A +R+ ++ P+
Sbjct: 659 SEDDESLREMVELAAQRLYEALTPV 683
>ref|NP_061283.2| cleavage and polyadenylation specificity factor 3 [Mus musculus]
gi|23271024|gb|AAH23297.1| Cleavage and polyadenylation
specificity factor 3 [Mus musculus]
Length = 684
Score = 709 bits (1830), Expect = 0.0
Identities = 358/685 (52%), Positives = 479/685 (69%), Gaps = 18/685 (2%)
Query: 14 INRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST 73
I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 74 VDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLY 133
+D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 134 DEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 193
E D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 194 EDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYAL 253
EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +AL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
Query: 254 GRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPF 311
GRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 312 AFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTL 371
FKHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 304 VFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTL 363
Query: 372 AKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANE 431
AK I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NE
Sbjct: 364 AKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE 423
Query: 432 MGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSG 488
M RLK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG
Sbjct: 424 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 483
Query: 489 LLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDE 548
+LVK+ F Y I++P DL ++ L+ + V Q IPY+G F ++ +L+++ VE +
Sbjct: 484 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQ 543
Query: 549 ESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDA 608
E P L V +TV E V L W ++P NDM +D+V ++L + + PKI +
Sbjct: 544 EK--PALKVFKSITVVQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAV 598
Query: 609 TKIEEENEKKT-EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-- 663
K+ ++ E K ++ +L +FG V V ++ L + +DG A +N E+ VE E
Sbjct: 599 QKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEG 658
Query: 664 ---NEGLKERVRTAFRRIQSSVKPI 685
+E L+E V A +R+ ++ P+
Sbjct: 659 SEDDESLREMVELAAQRLYEALTPV 683
>emb|CAA65151.1| Cleavage and Polyadenylation Specifity Factor protein [Bos taurus]
gi|18202362|sp|P79101|CPSC_BOVIN Cleavage and
polyadenylation specificity factor, 73 kDa subunit (CPSF
73 kDa subunit) gi|27805863|ref|NP_776709.1| cleavage
and polyadenylation specific factor 3, 73kDa [Bos
taurus]
Length = 684
Score = 709 bits (1829), Expect = 0.0
Identities = 359/685 (52%), Positives = 478/685 (69%), Gaps = 18/685 (2%)
Query: 14 INRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST 73
I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 74 VDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLY 133
+D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 134 DEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 193
E D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 194 EDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYAL 253
EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +AL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
Query: 254 GRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPF 311
GRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 312 AFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTL 371
FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 304 VFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTL 363
Query: 372 AKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANE 431
AK I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NE
Sbjct: 364 AKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE 423
Query: 432 MGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSG 488
M RLK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG
Sbjct: 424 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 483
Query: 489 LLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDE 548
+LVK+ F Y I++P DL ++ L+ + V Q IPY+G F ++ +L+++ VE +
Sbjct: 484 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQ 543
Query: 549 ESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDA 608
E P L V +TV E V L W ++P NDM +D+V ++L + + PKI +
Sbjct: 544 EK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAV 598
Query: 609 TKIEEENEKKT-EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-- 663
K+ ++ E K ++ +L +FG V V + L + +DG A +N E+ VE E
Sbjct: 599 QKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSILSVTVDGKTANINLETRTVECEEG 658
Query: 664 ---NEGLKERVRTAFRRIQSSVKPI 685
+E L+E V A +R+ ++ P+
Sbjct: 659 SEDDESLREMVELAAQRLYEALTPV 683
>ref|XP_216667.3| PREDICTED: similar to Cleavage and polyadenylation specificity
factor 3 [Rattus norvegicus]
Length = 685
Score = 708 bits (1827), Expect = 0.0
Identities = 358/684 (52%), Positives = 478/684 (69%), Gaps = 18/684 (2%)
Query: 14 INRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST 73
I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 74 VDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLY 133
+D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 134 DEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 193
E D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 194 EDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYAL 253
EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +AL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
Query: 254 GRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPF 311
GRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 312 AFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTL 371
FKHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 304 VFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTL 363
Query: 372 AKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANE 431
AK I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NE
Sbjct: 364 AKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE 423
Query: 432 MGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSG 488
M RLK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG
Sbjct: 424 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 483
Query: 489 LLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDE 548
+LVK+ F Y I++P DL ++ L+ + V Q IPY+G F ++ +L+++ VE +
Sbjct: 484 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQ 543
Query: 549 ESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDA 608
E P L V +TV E V L W ++P NDM +D+V ++L + + PKI +
Sbjct: 544 EK--PALKVFKSITVVQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAV 598
Query: 609 TKIEEENEKKT-EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-- 663
K+ ++ E K ++ +L +FG V V ++ L + +DG A +N E+ VE E
Sbjct: 599 QKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEG 658
Query: 664 ---NEGLKERVRTAFRRIQSSVKP 684
+E L+E V A +R+ ++ P
Sbjct: 659 SEDDESLREMVELAAQRLYEALTP 682
>gb|AAH11654.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
Length = 684
Score = 707 bits (1826), Expect = 0.0
Identities = 360/685 (52%), Positives = 478/685 (69%), Gaps = 18/685 (2%)
Query: 14 INRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST 73
I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 74 VDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLY 133
+D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 134 DEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 193
E D+ SMDKIE I+FH EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 124 TETDLEESMDKIETINFHGVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 194 EDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYAL 253
EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +AL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
Query: 254 GRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPF 311
GRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 312 AFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTL 371
FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 304 VFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTL 363
Query: 372 AKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANE 431
AK I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NE
Sbjct: 364 AKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE 423
Query: 432 MGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSG 488
M RLK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG
Sbjct: 424 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 483
Query: 489 LLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDE 548
+LVK+ F Y I++P DL ++ L+ + V Q IPY+G F ++ +L+++ VE +
Sbjct: 484 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQ 543
Query: 549 ESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDA 608
E P L V +TV E V L W ++P NDM +D+V ++L + + PKI +
Sbjct: 544 EK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAV 598
Query: 609 TKIEEENEKKT-EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-- 663
K+ ++ E K ++ +L +FG V V ++ L + +DG A LN E+ VE E
Sbjct: 599 QKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEG 658
Query: 664 ---NEGLKERVRTAFRRIQSSVKPI 685
+E L+E V A +R+ ++ P+
Sbjct: 659 SEDDESLREMVELAAQRLYEALTPV 683
>gb|AAF19420.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Mus
musculus] gi|18203388|sp|Q9QXK7|CPSC_MOUSE Cleavage and
polyadenylation specificity factor, 73 kDa subunit (CPSF
73 kDa subunit)
Length = 684
Score = 706 bits (1822), Expect = 0.0
Identities = 357/685 (52%), Positives = 477/685 (69%), Gaps = 18/685 (2%)
Query: 14 INRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST 73
I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 74 VDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLY 133
+D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 134 DEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 193
E D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 194 EDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYAL 253
EDRHL AAE P PD+ IIESTYG H+ R RE RF +H +++GGR LIP +AL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFAL 243
Query: 254 GRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPF 311
GRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 312 AFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTL 371
FKHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 304 VFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTL 363
Query: 372 AKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANE 431
AK I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NE
Sbjct: 364 AKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE 423
Query: 432 MGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSG 488
M RLK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG
Sbjct: 424 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 483
Query: 489 LLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDE 548
+LVK+ F Y I++P DL ++ L+ + V Q IPY+G F ++ +L+++ VE +
Sbjct: 484 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELDIQ 543
Query: 549 ESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDA 608
E P L V +TV E V W ++P NDM +D+V ++L + + PKI +
Sbjct: 544 EK--PALKVFKSITVVQEPGM-VGSEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAV 598
Query: 609 TKIEEENEKKT-EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-- 663
K+ ++ E K ++ +L +FG V V ++ L + +DG A +N E+ VE E
Sbjct: 599 QKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEG 658
Query: 664 ---NEGLKERVRTAFRRIQSSVKPI 685
+E L+E V A +R+ ++ P+
Sbjct: 659 SEDDESLREMVELAAQRLYEALTPV 683
>dbj|BAD97207.1| cleavage and polyadenylation specific factor 3, 73kDa variant [Homo
sapiens]
Length = 684
Score = 706 bits (1821), Expect = 0.0
Identities = 359/685 (52%), Positives = 478/685 (69%), Gaps = 18/685 (2%)
Query: 14 INRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST 73
I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 74 VDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLY 133
+D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 134 DEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 193
E + SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 124 TETVLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 194 EDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYAL 253
EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +AL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
Query: 254 GRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPF 311
GRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 312 AFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTL 371
FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 304 VFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTL 363
Query: 372 AKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANE 431
AK I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NE
Sbjct: 364 AKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE 423
Query: 432 MGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSG 488
M RLK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG
Sbjct: 424 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 483
Query: 489 LLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDE 548
+LVK+ F Y I++P DL ++ L+ + V Q IPY+G F ++ +L+++ VE +
Sbjct: 484 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQ 543
Query: 549 ESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDA 608
E P L V +TV E V L W ++P NDM +D+V ++L + + PKI +
Sbjct: 544 EK--PALKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAV 598
Query: 609 TKIEEENEKKT-EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-- 663
K+ ++ E K ++ +L +FG V V ++ L + +DG A LN E+ VE E
Sbjct: 599 QKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEG 658
Query: 664 ---NEGLKERVRTAFRRIQSSVKPI 685
+E L+E V A +R+ ++ P+
Sbjct: 659 SEDDESLREMVELAAQRLYEALTPV 683
>gb|AAH84286.1| LOC495111 protein [Xenopus laevis]
Length = 692
Score = 705 bits (1820), Expect = 0.0
Identities = 359/699 (51%), Positives = 486/699 (69%), Gaps = 25/699 (3%)
Query: 1 MSSVKKRESNGGTINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGM 60
MS +K ES I E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM
Sbjct: 1 MSVKRKAES---AIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGM 57
Query: 61 AALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDY 120
ALPY D IDP+ +D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDY
Sbjct: 58 DALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDY 117
Query: 121 VKVSKVSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIA 180
VKVS +S DDMLY E D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IA
Sbjct: 118 VKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIA 177
Query: 181 GVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTI 240
GV++LYTGD+SR+EDRHL AAE P PD+ IIESTYG H+ R RE RF + +H +
Sbjct: 178 GVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIV 237
Query: 241 SQGGRVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMN 300
++GGR LIP +ALGRAQELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MN
Sbjct: 238 NRGGRSLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMN 297
Query: 301 DRI--QNAKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKN 358
D+I Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N
Sbjct: 298 DKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRN 357
Query: 359 SCVIPGYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELN 418
+I GY VEGTLAK I++EP+E+ M+G PL M V YISFSAH D QTS F+ L
Sbjct: 358 GVIIAGYCVEGTLAKHIMSEPEEIVTMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALK 417
Query: 419 PPNIILVHGAANEMGRLKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKL 475
PP++ILVHG NEM RLK L+ ++ D + ++ P+N ++V + F +K+AK +G L
Sbjct: 418 PPHVILVHGEQNEMARLKAALIREYEDNEEVDIEVHNPRNTEAVTLNFRGEKLAKVMGFL 477
Query: 476 AEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRL 535
A+K PE + +SG+LVK+ F Y I+ P DL ++ L+ + VTQ+ IP++G F ++ +L
Sbjct: 478 ADKKPEQAQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQKQAIPFTGPFNLLFCQL 537
Query: 536 KQIYESVEP-SVDEESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLN 594
+Q+ VE V+E+ L V VTV +++ V L W ++P NDM +D+V+ ++L
Sbjct: 538 QQLTGDVEEIEVNEKDA---LRVFKAVTVVKDADV-VYLEWVANPANDMYADTVITVILE 593
Query: 595 I--NRDLPKIVAESDATKIEEENEKKTEKVMQALLNSLFGN--VKVGENGKLIINIDGNV 650
+ N K VA + +++ + +K ++ +L +FG V + + + +DG
Sbjct: 594 LQSNPKANKAVASKASKEVDTDAYRKR---LEMMLQDIFGEDCVNCEDTANITVTVDGKS 650
Query: 651 AELNKESGEVE-----SENEGLKERVRTAFRRIQSSVKP 684
A L+ E+ VE E+E L+E V+ A +R+ ++ P
Sbjct: 651 AILSMETRTVEYEEGIDEDETLREMVQQAAQRLYDALCP 689
>ref|XP_419942.1| PREDICTED: similar to Cleavage and Polyadenylation Specifity Factor
protein [Gallus gallus]
Length = 670
Score = 702 bits (1811), Expect = 0.0
Identities = 351/673 (52%), Positives = 470/673 (69%), Gaps = 20/673 (2%)
Query: 27 LGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPSTVDVLLITHFHLDH 86
LGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+ +D+LLI+HFHLDH
Sbjct: 2 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDH 61
Query: 87 AASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLYDEQDINRSMDKIE 146
+LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY E D+ SMDKIE
Sbjct: 62 CGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE 121
Query: 147 VIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAETPQF 206
I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE P
Sbjct: 122 TINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNI 181
Query: 207 SPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEY 266
PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +ALGRAQELLLILDEY
Sbjct: 182 KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEY 241
Query: 267 WANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPFAFKHISALSSIDI 324
W NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF FKHIS L S+D
Sbjct: 242 WQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDH 301
Query: 325 FKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTLAKTILNEPKEVTL 384
F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I++EP+E+T
Sbjct: 302 FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITT 361
Query: 385 MNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANEMGRLKQKLMTQFA 444
M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NEM RLK L+ ++
Sbjct: 362 MSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYE 421
Query: 445 DR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMA 501
D + ++ P+N ++V + F +K+AK +G LA+K PE G+ +SG+LVK+ F Y I++
Sbjct: 422 DNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGILVKRNFNYHILS 481
Query: 502 PDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDEESGVPMLLVHDRV 561
P DL ++ L+ + VTQ + IPY+G F ++ +L+++ VE ++ P L V +
Sbjct: 482 PCDLSNYTDLAMSTVTQTLAIPYTGPFNLLFYQLQKLTGDVEEIEIQQK--PALKVFKSI 539
Query: 562 TVKHESEKHVSLHWASDPINDMVSDSVVALVLNI--NRDLPKIVAESDATKIEEENEKKT 619
TV E V L W ++P NDM +D+V ++L + N + K +TK++ E +K
Sbjct: 540 TVIQEPGM-VVLEWVANPANDMYADTVTTVILEVQSNPKIQKAAVHKVSTKVDMEEYRKR 598
Query: 620 EKVMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-----NEGLKERVR 672
M+ +L +FG V E L + +DG A L+ E+ + E +E L+E V
Sbjct: 599 ---MEMMLQDMFGEDCVSSKEGSILCVTVDGKTANLSLETRTADCEPGSEDDESLREMVE 655
Query: 673 TAFRRIQSSVKPI 685
A +R+ ++ P+
Sbjct: 656 LAAQRLYDALSPV 668
>gb|AAH85402.1| Cleavage and polyadenylation specificity factor 3 [Danio rerio]
gi|56207923|emb|CAI21234.1| novel protein similar to
vertebrate cleavage and polyadenylation specific factor
3, 73kDa (CPSF3) [Danio rerio]
Length = 690
Score = 696 bits (1797), Expect = 0.0
Identities = 355/687 (51%), Positives = 477/687 (68%), Gaps = 29/687 (4%)
Query: 17 ETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPSTVDV 76
E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+ +D+
Sbjct: 14 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDL 73
Query: 77 LLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLYDEQ 136
LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY E
Sbjct: 74 LLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTET 133
Query: 137 DINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 196
D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDR
Sbjct: 134 DLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDR 193
Query: 197 HLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRA 256
HL AAE P PD+ I ESTYG H+ R RE RF + +H +++ GR LIP +ALGRA
Sbjct: 194 HLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRA 253
Query: 257 QELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRIQNA--KSNPFAFK 314
QELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I+ A +NPF FK
Sbjct: 254 QELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININNPFVFK 313
Query: 315 HISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTLAKT 374
HIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 314 HISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKH 373
Query: 375 ILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANEMGR 434
I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NEM R
Sbjct: 374 IMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMAR 433
Query: 435 LKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLV 491
LK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K G+ VSG+LV
Sbjct: 434 LKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCSQGQRVSGILV 493
Query: 492 KKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEP-SVDEES 550
KK F+Y I++P DL ++ L+ + V Q IP++G F ++ S+L+ + VE + E+S
Sbjct: 494 KKNFSYHILSPSDLSNYTDLAMSTVKQTQAIPFTGPFPLLLSQLRHLTGDVEEIEMSEKS 553
Query: 551 GVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDATK 610
V V + +TV HE+ V L W ++P+NDM +D+V +VL + + PK A K
Sbjct: 554 TVK---VFNSITVIHENNL-VVLEWFANPLNDMYADAVTTVVLEVQSN-PK------AQK 602
Query: 611 IEEENEKKTE-KVMQALLNSLFGN------VKVGENGKLIINIDGNVAELNKESGEVE-- 661
+ EKK + V Q L +F + V + L +N+D A ++ E+ VE
Sbjct: 603 ALQPQEKKVDVNVFQNRLLKMFQDMFGEECVDFKDKNCLAVNVDEKTAFIDLETRTVEYE 662
Query: 662 ---SENEGLKERVRTAFRRIQSSVKPI 685
E++ L+E + A +R+ ++ P+
Sbjct: 663 EPNPEDDSLREMLELAVQRLYEAINPV 689
>gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
gi|51467896|ref|NP_001003836.1| cleavage and
polyadenylation specificity factor 3 [Danio rerio]
Length = 690
Score = 696 bits (1796), Expect = 0.0
Identities = 355/687 (51%), Positives = 477/687 (68%), Gaps = 29/687 (4%)
Query: 17 ETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPSTVDV 76
E DQL++ PLGAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+ +D+
Sbjct: 14 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMVDCGIHPGLEGMDALPYIDLIDPAEIDL 73
Query: 77 LLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLYDEQ 136
LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY E
Sbjct: 74 LLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTET 133
Query: 137 DINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 196
D+ SMDKIE I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDR
Sbjct: 134 DLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDR 193
Query: 197 HLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRA 256
HL AAE P PD+ I ESTYG H+ R RE RF + +H +++ GR LIP +ALGRA
Sbjct: 194 HLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRA 253
Query: 257 QELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRIQNA--KSNPFAFK 314
QELLLILDEYW NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I+ A +NPF FK
Sbjct: 254 QELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININNPFVFK 313
Query: 315 HISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTLAKT 374
HIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 314 HISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKH 373
Query: 375 ILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANEMGR 434
I++EP+E+T M+G PL M V YISFSAH D QTS F+ L PP++ILVHG NEM R
Sbjct: 374 IMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMAR 433
Query: 435 LKQKLMTQFADR---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLV 491
LK L+ ++ D + ++ P+N ++V + F +K+AK +G LA+K G+ VSG+LV
Sbjct: 434 LKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCSQGQRVSGILV 493
Query: 492 KKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEP-SVDEES 550
KK F+Y I++P DL ++ L+ + V Q IP++G F ++ S+L+ + VE + E+S
Sbjct: 494 KKNFSYHILSPSDLSNYTDLAMSTVKQTQAIPFTGPFPLLLSQLRHLTGDVEEIEMSEKS 553
Query: 551 GVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDATK 610
V V + +TV HE+ V L W ++P+NDM +D+V +VL + + PK A K
Sbjct: 554 TVK---VFNSITVIHENNL-VVLEWFANPLNDMYADAVTTVVLEVQSN-PK------AQK 602
Query: 611 IEEENEKKTE-KVMQALLNSLFGN------VKVGENGKLIINIDGNVAELNKESGEVE-- 661
+ EKK + V Q L +F + V + L +N+D A ++ E+ VE
Sbjct: 603 ALQPQEKKVDVNVFQNRLLKMFQDMFGEECVDFKDKNCLAVNVDEKTAFIDLETRTVEYE 662
Query: 662 ---SENEGLKERVRTAFRRIQSSVKPI 685
E++ L+E + A +R+ ++ P+
Sbjct: 663 EPNPEDDSLREMLELAVQRLYEAINPV 689
>ref|XP_540075.1| PREDICTED: hypothetical protein XP_540075 [Canis familiaris]
Length = 905
Score = 696 bits (1795), Expect = 0.0
Identities = 352/671 (52%), Positives = 469/671 (69%), Gaps = 18/671 (2%)
Query: 28 GAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPSTVDVLLITHFHLDHA 87
GAG EVGRSC+ + +KG+ ++ DCGIHPG GM ALPY D IDP+ +D+LLI+HFHLDH
Sbjct: 239 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 298
Query: 88 ASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVDDMLYDEQDINRSMDKIEV 147
+LP+FL+KT+FKGR FMT+ATKAIY+ LLSDYVKVS +S DDMLY E D+ SMDKIE
Sbjct: 299 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIET 358
Query: 148 IDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAETPQFS 207
I+FH+ EV GI+FWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE P
Sbjct: 359 INFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIK 418
Query: 208 PDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYW 267
PD+ IIESTYG H+ R RE RF + +H +++GGR LIP +ALGRAQELLLILDEYW
Sbjct: 419 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 478
Query: 268 ANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI--QNAKSNPFAFKHISALSSIDIF 325
NHPEL +IPIYYAS LAKKC+ VY+TY +MND+I Q +NPF FKHIS L S+D F
Sbjct: 479 QNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHF 538
Query: 326 KDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTLAKTILNEPKEVTLM 385
D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I++EP+E+T M
Sbjct: 539 DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTM 598
Query: 386 NGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANEMGRLKQKLMTQFAD 445
+G PL M V YISFSAH D QTS F+ L PP++ILVHG NEM RLK L+ ++ D
Sbjct: 599 SGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYED 658
Query: 446 R---NTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAP 502
+ ++ P+N ++V + F +K+AK +G LA+K PE G+ VSG+LVK+ F Y I++P
Sbjct: 659 NDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSP 718
Query: 503 DDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDEESGVPMLLVHDRVT 562
DL ++ L+ + V Q IPY+G F ++ +L+++ VE +E P L V +T
Sbjct: 719 CDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQEK--PALKVFKNIT 776
Query: 563 VKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDATKIEEENEKKT-EK 621
V E V L W ++P NDM +D+V ++L + + PKI + K+ ++ E K
Sbjct: 777 VIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSN-PKI-RKGAVQKVSKKLEMHVYSK 833
Query: 622 VMQALLNSLFGN--VKVGENGKLIINIDGNVAELNKESGEVESE-----NEGLKERVRTA 674
++ +L +FG V V + L + +DG A +N E+ VE E +E L+E V A
Sbjct: 834 RLEIMLQDIFGEDCVSVKDGSVLSVTVDGKTANINLETRTVECEEGSEDDESLREMVELA 893
Query: 675 FRRIQSSVKPI 685
+R+ ++ P+
Sbjct: 894 AQRLYEALTPV 904
>ref|XP_395515.2| PREDICTED: similar to GA20526-PA [Apis mellifera]
Length = 686
Score = 683 bits (1763), Expect = 0.0
Identities = 349/693 (50%), Positives = 476/693 (68%), Gaps = 21/693 (3%)
Query: 1 MSSVKKRESNGGTINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGM 60
MS+ +K E+ + E D L + PLGAG EVGRSC+ + +KGK ++ DCGIHPG SGM
Sbjct: 1 MSAKRKPETQ---VPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGM 57
Query: 61 AALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDY 120
ALP+ D ++ +D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+ATKAIY+ LLSDY
Sbjct: 58 DALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDY 117
Query: 121 VKVSKVSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIA 180
+KVS ++ + MLY E D+ SMDKIE I+FH+ +V GI+FW Y AGHVLGAAMFM++IA
Sbjct: 118 IKVSNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIA 177
Query: 181 GVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTI 240
GV++LYTGD+SR+EDRHL AAE P PDV I ESTYG H+ R RE RFT+++H +
Sbjct: 178 GVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIV 237
Query: 241 SQGGRVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMN 300
++GGR LIP +ALGRAQELLLILDEYW+ HPEL IPIYYAS LAKKC+ VY+TY +MN
Sbjct: 238 NRGGRCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTYVNAMN 297
Query: 301 DRI--QNAKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKN 358
D+I Q A +NPF FKHIS L ID F+D+GP VVMASPG +QSGLSR+LF+ WC+D KN
Sbjct: 298 DKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKN 357
Query: 359 SCVIPGYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELN 418
+I GY VEGTLAKTIL+EP+E+T M+G PL M V YISFSAH D QTS F+ L
Sbjct: 358 GVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRSLK 417
Query: 419 PPNIILVHGAANEMGRLKQKLMTQFAD---RNTKILTPKNCQSVEMYFNSQKMAKTIGKL 475
PP+++LVHG NEMGRLK L ++ D +I P+N +VE+YF +K AK +G L
Sbjct: 418 PPHVVLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTL 477
Query: 476 AEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRL 535
A +TP+ G+T+SG+LVK+ F Y ++AP DL ++ +S + V QR ++ +S + V++ L
Sbjct: 478 AMETPKPGQTLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLLVLKHLL 537
Query: 536 KQIYESVEPSVDEESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNI 595
QI ++E D++ L V + V + K V++ W + P+NDM +DSV+ +L
Sbjct: 538 TQIAGNLEVVDDKK-----LRVFKNIDVTIDG-KIVTMEWVATPVNDMYADSVLTAILQA 591
Query: 596 NRDLPKIVAESDATKIEEENEKKTEKVMQALLNSLFGN---VKVGENGKLIINIDGNVAE 652
+ TK++ + K + + +L +FG K+ + KL + +DG A
Sbjct: 592 EMMEQPLKVLPAPTKMDRMHFK---ECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAH 648
Query: 653 LNKESGEVES-ENEGLKERVRTAFRRIQSSVKP 684
++ + EV S E+E ++ V+TA ++ S+ P
Sbjct: 649 IDLLNLEVTSKEDETFQQIVQTAVTKLHQSLAP 681
>emb|CAH93488.1| hypothetical protein [Pongo pygmaeus]
Length = 647
Score = 669 bits (1726), Expect = 0.0
Identities = 341/651 (52%), Positives = 454/651 (69%), Gaps = 18/651 (2%)
Query: 48 LFDCGIHPGYSGMAALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTY 107
+ DCGIHPG GM ALPY D IDP+ +D+LLI+HFHLDH +LP+FL+KT+FKGR FMT+
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTH 60
Query: 108 ATKAIYKLLLSDYVKVSKVSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAG 167
ATKAIY+ LLSDYVKVS +S DDMLY E D+ SMDKIE I+FH+ EV GI+FWCY AG
Sbjct: 61 ATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAG 120
Query: 168 HVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHT 227
HVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE P PD+ IIESTYG H+ R
Sbjct: 121 HVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREE 180
Query: 228 REKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKK 287
RE RF + +H +++GGR LIP +ALGRAQELLLILDEYW NHPEL +IPIYYAS LAKK
Sbjct: 181 REARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKK 240
Query: 288 CLTVYETYTLSMNDRI--QNAKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLS 345
C+ VY+TY +MND+I Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLS
Sbjct: 241 CMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLS 300
Query: 346 RQLFDMWCSDKKNSCVIPGYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHA 405
R+LF+ WC+DK+N +I GY VEGTLAK I++EP+E+T M+G PL M V YISFSAH
Sbjct: 301 RELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHT 360
Query: 406 DSAQTSAFLEELNPPNIILVHGAANEMGRLKQKLMTQFADR---NTKILTPKNCQSVEMY 462
D QTS F+ L PP++ILVHG NEM RLK L+ ++ D + ++ P+N ++V +
Sbjct: 361 DYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLN 420
Query: 463 FNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITI 522
F +K+AK +G LA+K PE G+ VSG+LVK+ F Y I++P DL ++ L+ + V Q I
Sbjct: 421 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAI 480
Query: 523 PYSGAFCVIQSRLKQIYESVEPSVDEESGVPMLLVHDRVTVKHESEKHVSLHWASDPIND 582
PY+G F ++ +L+++ VE +E P L V +TV E V L W ++P ND
Sbjct: 481 PYTGPFNLLYYQLQKLTGDVEELEIQEK--PALKVFKNITVIQEPGM-VVLEWLANPSND 537
Query: 583 MVSDSVVALVLNINRDLPKIVAESDATKIEEENEKKT-EKVMQALLNSLFGN--VKVGEN 639
M +D+V ++L + + PKI + K+ ++ E K ++ +L +FG + V ++
Sbjct: 538 MYADTVTTVILEVQSN-PKI-RKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCISVKDD 595
Query: 640 GKLIINIDGNVAELNKESGEVESE-----NEGLKERVRTAFRRIQSSVKPI 685
L + +DG A LN E+ VE E +E L+E V A +R+ ++ P+
Sbjct: 596 SILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 646
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,131,490,100
Number of Sequences: 2540612
Number of extensions: 47709257
Number of successful extensions: 130903
Number of sequences better than 10.0: 675
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 366
Number of HSP's that attempted gapping in prelim test: 128919
Number of HSP's gapped (non-prelim): 937
length of query: 690
length of database: 863,360,394
effective HSP length: 135
effective length of query: 555
effective length of database: 520,377,774
effective search space: 288809664570
effective search space used: 288809664570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)
Medicago: description of AC134322.16