BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.1 + phase: 0 /pseudo
(413 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 129 1e-28
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 127 8e-28
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 127 8e-28
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 123 9e-27
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 120 8e-26
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 120 1e-25
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 117 9e-25
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 115 3e-24
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 113 9e-24
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 112 2e-23
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 112 2e-23
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 110 1e-22
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 104 4e-21
gb|AAP52527.1| putative reverse transcriptase. [Oryza sativa (ja... 103 1e-20
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 103 1e-20
ref|NP_914307.1| reverse transcriptase -like protein [Oryza sati... 103 1e-20
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 102 2e-20
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 102 3e-20
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 93 2e-17
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 93 2e-17
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 129 bits (325), Expect = 1e-28
Identities = 107/416 (25%), Positives = 173/416 (40%), Gaps = 53/416 (12%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESING-NIPGGSYIHDFTVQNLLSQ 59
RSIL R ++ GG + IG+G + WL +G S N+ IH V +L+
Sbjct: 861 RSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIH-MKVSHLIDP 919
Query: 60 HGKSWNEPLVQQMFSNDIAEAILHT-PLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEEL 118
++WN + ++F + I+H PL + C W NG Y+V+S Y E
Sbjct: 920 LTRNWNLKKLTELFHEKDVQLIMHQRPLISSEDSYC--WAGTNNGLYTVKSGYERSSRET 977
Query: 119 I-------DVSHLRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNC 171
DV P + +W L+ PK+K +W +G L RL+ +G+ C
Sbjct: 978 FKNLFKEADVYPSVNP-LFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGC 1036
Query: 172 ESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQN--LSRNI 229
C + E +NHLLF+CPF+ VW + I S N + QN + R++
Sbjct: 1037 LFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHM 1096
Query: 230 KQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ 289
+ W +WK+RN +++ S ++V +A +EE
Sbjct: 1097 RTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKA------YEEC---------------- 1134
Query: 290 *PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQRT 349
L ++AQ + S P+ H KW PP +G KCN+ A+S Q Q
Sbjct: 1135 ----NLWINAQEKSSG---------GVSPSEH---KWNPPPAGELKCNIGVAWSRQKQLA 1178
Query: 350 GIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDNIDFELDS 405
G+ +RD +L + Q++ + + A++ M +FD + F S
Sbjct: 1179 GVSWVLRDSMGQVLLHSRRSYSQVYSLFDAKIKSWDWALESMDHFHFDKVTFAATS 1234
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 127 bits (318), Expect = 8e-28
Identities = 104/421 (24%), Positives = 173/421 (40%), Gaps = 70/421 (16%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIH-DFTVQNLLSQ 59
RSIL R ++ G R IG+G + WL +G + + +I+ D V L+
Sbjct: 887 RSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSN-RRPLNRRRFINVDLKVSQLIDP 945
Query: 60 HGKSWNEPLVQQMFSNDIAEAIL-HTPLYDQVTNDCLVWKAERNGCYSVRSAY------- 111
++WN +++ +F E IL PL+ + + C W NG YSV++ Y
Sbjct: 946 TSRNWNLNMLRDLFPWKDVEIILKQRPLFFKEDSFC--WLHSHNGLYSVKTGYEFLSKQV 1003
Query: 112 --RLYVEELIDVSHLRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPT 169
RLY E + S + IW L +PK++ LW G +P RL+ +G+
Sbjct: 1004 HHRLYQEAKVKPSV---NSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDD 1060
Query: 170 NCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSRNI 229
C C ++E +NH+LFECP + VW + H + +N++++ + L
Sbjct: 1061 GCLMCDTENETINHILFECPLARQVW-------AITHLSSAGSEFSNSVYTNMSRLIDLT 1113
Query: 230 KQ-------RFAA--TCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPAT 280
+Q RF + W LWK+RN ++E + +VD+A +W A
Sbjct: 1114 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSA------- 1166
Query: 281 FLQEDVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDA 340
Q H Q+ + + + KW PP G KCN+
Sbjct: 1167 ---------------QTHMQNDEKHLKI---------------TKWCPPLPGELKCNIGF 1196
Query: 341 AFSAQFQRTGIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDNID 400
A+S Q +G +RD +L F+++ + A++ M +FD +
Sbjct: 1197 AWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESMTHHHFDRVI 1256
Query: 401 F 401
F
Sbjct: 1257 F 1257
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 127 bits (318), Expect = 8e-28
Identities = 104/421 (24%), Positives = 173/421 (40%), Gaps = 70/421 (16%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIH-DFTVQNLLSQ 59
RSIL R ++ G R IG+G + WL +G + + +I+ D V L+
Sbjct: 908 RSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSN-RRPLNRRRFINVDLKVSQLIDP 966
Query: 60 HGKSWNEPLVQQMFSNDIAEAIL-HTPLYDQVTNDCLVWKAERNGCYSVRSAY------- 111
++WN +++ +F E IL PL+ + + C W NG YSV++ Y
Sbjct: 967 TSRNWNLNMLRDLFPWKDVEIILKQRPLFFKEDSFC--WLHSHNGLYSVKTGYEFLSKQV 1024
Query: 112 --RLYVEELIDVSHLRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPT 169
RLY E + S + IW L +PK++ LW G +P RL+ +G+
Sbjct: 1025 HHRLYQEAKVKPSV---NSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDD 1081
Query: 170 NCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSRNI 229
C C ++E +NH+LFECP + VW + H + +N++++ + L
Sbjct: 1082 GCLMCDTENETINHILFECPLARQVW-------AITHLSSAGSEFSNSVYTNMSRLIDLT 1134
Query: 230 KQ-------RFAA--TCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPAT 280
+Q RF + W LWK+RN ++E + +VD+A +W A
Sbjct: 1135 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSA------- 1187
Query: 281 FLQEDVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDA 340
Q H Q+ + + + KW PP G KCN+
Sbjct: 1188 ---------------QTHMQNDEKHLKI---------------TKWCPPLPGELKCNIGF 1217
Query: 341 AFSAQFQRTGIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDNID 400
A+S Q +G +RD +L F+++ + A++ M +FD +
Sbjct: 1218 AWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESMTHHHFDRVI 1277
Query: 401 F 401
F
Sbjct: 1278 F 1278
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 123 bits (309), Expect = 9e-27
Identities = 77/281 (27%), Positives = 133/281 (46%), Gaps = 14/281 (4%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
RS++ +R +V G +GSGA+I + + PW+ G V++L+
Sbjct: 693 RSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSR 752
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELID 120
WN L++++F + I P+ + D L W + G Y+V+S Y +L +
Sbjct: 753 SNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNE 812
Query: 121 VSHLRRPGNWQ---HIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCGAD 177
+ L P +IW ++ PK+++ LW + GC+P L+ +G+ C C SCGA
Sbjct: 813 GTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGAS 872
Query: 178 HEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSRNI-----KQR 232
E +NH LF+C + +W + Q +N+IF+ L +L I
Sbjct: 873 EESINHTLFQCHPARQIWALS------QIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAP 926
Query: 233 FAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEA 273
+ W +WK RN K++ENVD++ ++++ A W+EA
Sbjct: 927 YPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEA 967
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 120 bits (301), Expect = 8e-26
Identities = 102/424 (24%), Positives = 174/424 (40%), Gaps = 49/424 (11%)
Query: 2 SILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQHG 61
SI + +++ G R +G G T I + PWL G D V +L ++
Sbjct: 1254 SIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPAR--GPILDEDMKVADLWRENK 1311
Query: 62 KSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAY------RLYV 115
+ W+ + + + + + + L + D W RN Y+VRS Y L
Sbjct: 1312 REWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTE 1371
Query: 116 EELIDVSHLRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCG 175
EE+I+ P Q IW LK++PK+K+ +W G L T +L+++ + C+ C
Sbjct: 1372 EEIINPLEGDVPLK-QEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCC 1430
Query: 176 ADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQ---NLSRNIKQR 232
E +NH++F C ++ VW SA + +D+ I ILQ N + I
Sbjct: 1431 NADETINHIIFTCSYAQVVWRSANF--SGSNRLCFTDNLEENIRLILQGKKNQNLPILNG 1488
Query: 233 FAA--TCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ* 290
W LWK RN +++ +D +V +A +W E T+ T + + Q
Sbjct: 1489 LMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVE--TMVNDTAISHNTAQS- 1545
Query: 291 PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQRTG 350
++RP +W+ P G KCN D+ + T
Sbjct: 1546 ------------------------NDRPLSRSK-QWSSPPEGFLKCNFDSGYVQGRDYTS 1580
Query: 351 IGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQ--WMQD---MYFDNIDFELDS 405
G +RD + + + + Q + EALG HA+Q W++ ++F+ + EL +
Sbjct: 1581 TGWILRDCNGRVLHSGCAKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTN 1640
Query: 406 KITR 409
I +
Sbjct: 1641 LINK 1644
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 120 bits (300), Expect = 1e-25
Identities = 96/369 (26%), Positives = 160/369 (43%), Gaps = 34/369 (9%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
RSI +++ G W +G+G +I I PWL S I G + V +L+++
Sbjct: 319 RSIEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHS-RRPITGKANCRLKWVSDLITED 377
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELID 120
G SW+ P + Q F N AE IL+ + + D + W ++NG +SVRSAYRL +L++
Sbjct: 378 G-SWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRL-AAQLVN 435
Query: 121 VSHLRRPGN------WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESC 174
+ G W+ IW KV KVK W + CL T V + + + C+ C
Sbjct: 436 IEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQIC 495
Query: 175 GADHEDLNHLLFECPFSIHVWN----SAGIWHDVQHAAIHSDSAANTIFSILQNLSRNIK 230
++ED H L C + +W+ S + D++ + + +F L+ + +
Sbjct: 496 DRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVL----GRFWLFDCLEKIPEYEQ 551
Query: 231 QRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ* 290
F T W W RN E + S + ++ I + + + Q Q D+
Sbjct: 552 AMFLMTLWRNWYVRN----ELIHGKSAPPTETSQRFIQSYVD-LLFQIRQAPQADL---- 602
Query: 291 PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQRTG 350
+ +H VPL+ + R + W P G K NVD +F A + G
Sbjct: 603 ------VKGKHVVRTVPLKGGPKY--RVLNNHQPCWERPKDGWMKLNVDGSFDASSGKGG 654
Query: 351 IGVCIRDDS 359
+G+ +R+ +
Sbjct: 655 LGMILRNSA 663
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 117 bits (292), Expect = 9e-25
Identities = 95/369 (25%), Positives = 159/369 (42%), Gaps = 34/369 (9%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
RSI +++ G W +G+G +I I WL S I G + V +L+++
Sbjct: 1643 RSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHS-RRPITGKANCRLKWVSDLITED 1701
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELID 120
G SW+ P + Q F N AE IL+ + + D + W ++NG +SVRSAYRL +L++
Sbjct: 1702 G-SWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRL-AAQLVN 1759
Query: 121 VSHLRRPGN------WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESC 174
+ G W+ IW KV KVK W + CL T V + + + C+ C
Sbjct: 1760 IEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQIC 1819
Query: 175 GADHEDLNHLLFECPFSIHVWN----SAGIWHDVQHAAIHSDSAANTIFSILQNLSRNIK 230
++ED H L C + +W+ S + D++ + + +F L+ + +
Sbjct: 1820 DRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVL----GRFWLFDCLEKIPEYEQ 1875
Query: 231 QRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ* 290
F T W W RN E + S + ++ I + + + Q Q D+
Sbjct: 1876 AMFLMTLWRNWYVRN----ELIHGKSAPPTETSQRFIQSYVD-LLFQIRQAPQADL---- 1926
Query: 291 PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQRTG 350
+ +H VPL+ + R + W P G K NVD +F A + G
Sbjct: 1927 ------VKGKHVVRTVPLKGGPKY--RVLNNHQPCWERPKDGWMKLNVDGSFDASSGKGG 1978
Query: 351 IGVCIRDDS 359
+G+ +R+ +
Sbjct: 1979 LGMILRNSA 1987
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 115 bits (287), Expect = 3e-24
Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 14/255 (5%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
RSI + +++ G W +G G+ I I PW+ G S P G+ + V+ L+ +
Sbjct: 1110 RSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGANLVT-KVEELIDPY 1168
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELID 120
+W+E L+ Q F + AI P++ ++ D L W + GC++V+SAY++ E
Sbjct: 1169 TGTWDEDLLSQTFWEEDVAAIKSIPVHVEM-EDVLAWHFDARGCFTVKSAYKVQREMERR 1227
Query: 121 VSHLRRPGN----------WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTN 170
S PG W+ +W L V K+K+ LW MC L L +G+ T
Sbjct: 1228 ASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTR 1287
Query: 171 CESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSRNIK 230
C CG +ED HL F+C VW + + + + + ++ + + N +
Sbjct: 1288 CVMCGRYNEDAGHLFFKCKPVKKVWQALNL--EELRSMLEQQTSGKNVLQSIYCRPENER 1345
Query: 231 QRFAATCWSLWKHRN 245
W WK RN
Sbjct: 1346 TSAIVCLWQWWKERN 1360
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 113 bits (283), Expect = 9e-24
Identities = 96/401 (23%), Positives = 162/401 (39%), Gaps = 51/401 (12%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLAN--GESINGNIPGGSYIHDFTVQNLLS 58
RS+L R ++ G RW +G G TI I W+ + + P + D TV L++
Sbjct: 924 RSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSP---FPTDATVSCLMN 980
Query: 59 QHGKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEE- 117
+ + W+ L++ +F DIA+ IL P+ D W ++ G YSVRSAY L E
Sbjct: 981 EDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEA 1040
Query: 118 -LIDVSH---------LRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSC 167
D S+ L +W+ +W + K+K LW CL T +L+ + +
Sbjct: 1041 FFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPS 1100
Query: 168 PTNCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSR 227
C C D + + H+ CPF+ +W V+ + IF L+ S
Sbjct: 1101 TDGCVFCNRD-DTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSS 1159
Query: 228 NIKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQ 287
+ A T W +W+ RN N N+ V + + ++ +++ ++
Sbjct: 1160 HANTLLAVTFWHIWEARN-----NTKNNNGTV----------HPQRVVIKILSYVDMILK 1204
Query: 288 QQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQ 347
V Q Q A+P +W PP + + N DAA + +
Sbjct: 1205 HNTKTVDGQRGGNTQ--AIP-----------------RWQPPPASVWMINSDAAIFSSSR 1245
Query: 348 RTGIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAM 388
G+G IRD++ ++A + + EAL + A+
Sbjct: 1246 TMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRAL 1286
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 112 bits (281), Expect = 2e-23
Identities = 101/428 (23%), Positives = 169/428 (38%), Gaps = 63/428 (14%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHD-------FTV 53
+SI ++ +++ G R IG+G TI + PW+ + S++ V
Sbjct: 909 KSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVV 968
Query: 54 QNLLSQHGKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRL 113
++LL G+ WN LV +F ++ E IL + T D W+ R+G YSV+S Y +
Sbjct: 969 KDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWV 1028
Query: 114 YVE---ELIDVSHLRRPGN---WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSC 167
E + + + +P +Q IW L V PK+ + LW CL L + ++
Sbjct: 1029 MTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAR 1088
Query: 168 PTNCESCGADHEDLNHLLFECPFSIHVW-------NSAGIWHDVQHAAIHSDSAANTIFS 220
+C C + E +NHLLF+CPF+ W G W + +H + S
Sbjct: 1089 EKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHH------VLS 1142
Query: 221 ILQNLSRNIKQR--FAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQP 278
+ ++ W LWK+RN +++ + + QV+ +A + W QP
Sbjct: 1143 VHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQP 1202
Query: 279 ATFLQEDVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNV 338
Q+ + + V KW PPS G KCN
Sbjct: 1203 -----------------QVTSSTRDRCV------------------KWQPPSHGWVKCNT 1227
Query: 339 DAAFSAQFQRTGIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDN 398
D A+S G+G +R+ + + + V E L A+ + +
Sbjct: 1228 DGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRR 1287
Query: 399 IDFELDSK 406
+ FE DS+
Sbjct: 1288 VIFESDSQ 1295
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 112 bits (281), Expect = 2e-23
Identities = 90/419 (21%), Positives = 173/419 (40%), Gaps = 39/419 (9%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
RSIL R ++ G +G+G +I + WL + I D V +L+
Sbjct: 757 RSILHGRDLLCRGLVKRVGNGKSIRVWIDYWLDDNGLRAPWIKNPIINVDLLVSDLIDYE 816
Query: 61 GKSWN-EPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEE-- 117
+ W + L +Q F +D+ + + P+ +D +WK ++G YSV+ Y L +
Sbjct: 817 KRDWRLDKLEEQFFPDDVVKIRENRPVVS--LDDFWIWKHNKSGDYSVKLGYWLASNQNL 874
Query: 118 -LIDVSHLRRPGNWQ---HIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCES 173
+ + + +P +W L+ PK+K LW + G +P L +G+ + C++
Sbjct: 875 GQVAIEAMMQPSLNDLKTQVWKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQT 934
Query: 174 CGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSR-----N 228
CG + E + H+LF C F VW + I V S ++ L N
Sbjct: 935 CGCEGESIQHVLFSCSFPRQVWAMSNI--HVPLLGFECGSVYANLYHFLINRDNLKWPVE 992
Query: 229 IKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQ 288
+++ F W +WK+RNL +E ++ + + R + DW A ++ +
Sbjct: 993 LRRSFPWIIWRIWKNRNLFFFEGKRFTVLETILKVRKDVEDWFAAQVVEKERRAEVGQSD 1052
Query: 289 Q*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQR 348
Q Q+ + S V ++W PP + KCNV ++S + +
Sbjct: 1053 Q------QVFSPRNVSPV-----------------VRWLPPPTDWVKCNVGLSWSRRNRL 1089
Query: 349 TGIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDNIDFELDSKI 407
G+ +R+D ++ F + + L + A++ M + + + F +++ +
Sbjct: 1090 AGVAWVLRNDRGNVLMHSRRAFSNISSFLEAQFLSIVWAVESMVSHHVNRVVFGVEAAV 1148
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 110 bits (274), Expect = 1e-22
Identities = 98/365 (26%), Positives = 155/365 (41%), Gaps = 30/365 (8%)
Query: 9 IVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQHGKSWNEPL 68
+++ G W IG+G ++ I PWL S G+ + V LLS++G +W+E
Sbjct: 428 LLKEGIIWRIGNGKSVRIWRDPWLPRDFSRRPITRKGNCRLKW-VSELLSENG-AWDETR 485
Query: 69 VQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLY-----VEELIDVSH 123
V Q+F AEAI + + +D + W +++G +SVRSAY L +E S
Sbjct: 486 VNQVFLPVDAEAICSIRVSSRQEDDFVAWHPDKHGKFSVRSAYGLACNLVNMETSSSSSS 545
Query: 124 LRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCGADHEDLNH 183
R W IW KV+ W CL T + + C CG + ED H
Sbjct: 546 ARCKRMWNLIWQTNAPQKVRIFAWRAATNCLATMENKAKRKLEQSDICLVCGLEKEDTKH 605
Query: 184 LLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANT---IFSILQNLSRNIKQRFAATCWSL 240
+L CP + ++W G + + +++ + N IF L+ L + F W +
Sbjct: 606 VLCRCPDARNLW---GAMCEAGNISLNGGNLCNDPGWIFDQLEILLDYERTVFLLILWRI 662
Query: 241 WKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ*PAVPLQLHAQ 300
W RN E V ++ ++ + + +++ L+ Q +V++ +
Sbjct: 663 WFVRN----EIVHGKQPPPIEASKRFLESYVKSL-LEIRQHPQANVEK----------GK 707
Query: 301 HQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQRTGIGVCIRDDS* 360
H S V + RP N KW P G K NVD +F AQ GIGV +RD S
Sbjct: 708 HVISFV--NGKTNPARRPPEDKNQKWRKPCEGWMKVNVDGSFDAQTGSGGIGVVMRDWSG 765
Query: 361 TFVLA 365
+ A
Sbjct: 766 KVIFA 770
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411640|pir||H84529 hypothetical protein
At2g15510 [imported] - Arabidopsis thaliana
Length = 1138
Score = 104 bits (260), Expect = 4e-21
Identities = 87/376 (23%), Positives = 164/376 (43%), Gaps = 49/376 (13%)
Query: 2 SILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIH---DFTVQNLLS 58
SIL R ++ G R +G+G ++ + PW+ + I +P + D V +L++
Sbjct: 686 SILFGRELLAKGLRKEVGNGKSLNVWMDPWIFD---IAPRLPLQRHFSVNLDLKVNDLIN 742
Query: 59 QHGKSWNEPLVQQMF-SNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVE- 116
+ W L++++F D+ P+ + +D VW + G YSV+S Y L +
Sbjct: 743 FEDRCWKRDLLEELFYPTDVELITKRNPVVNM--DDFWVWLHAKTGEYSVKSGYWLAFQS 800
Query: 117 ---ELIDVSHLRRPGNW--QHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNC 171
+LI ++L N + +W K SPK+K LW + LP ++ +G+S C
Sbjct: 801 NKLDLIQQANLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRC 860
Query: 172 ESCGADHEDLNHLLFECPFSIHVWNSAGI---WHDVQHAAIHSDSAANTIFSILQNLSRN 228
+ CG + E NH+LF C + VW +G+ Q+A+I ++ + +
Sbjct: 861 QICGDEGESTNHVLFTCSMARQVWALSGVPTPEFGFQNASIFANIQFLFELKKMILVPDL 920
Query: 229 IKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQ 288
+K+ + W LWK+RN ++ + + + + + +W +A Q ++
Sbjct: 921 VKRSWPWVLWRLWKNRNKLFFDGITFCPLNSIVKIQEDTLEWFQA---------QSQIRV 971
Query: 289 Q*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQR 348
++ Q +P H+ W PP G KCN+ +A+S + +
Sbjct: 972 S--------ESEEGQRVIPF-THS-------------WEPPPEGWVKCNIGSAWSGKKKV 1009
Query: 349 TGIGVCIRDDS*TFVL 364
G +RD+ + +L
Sbjct: 1010 CGGAWVLRDEHGSVIL 1025
>gb|AAP52527.1| putative reverse transcriptase. [Oryza sativa (japonica
cultivar-group)] gi|37531876|ref|NP_920240.1| putative
reverse transcriptase. [Oryza sativa (japonica
cultivar-group)]
Length = 493
Score = 103 bits (257), Expect = 1e-20
Identities = 80/313 (25%), Positives = 134/313 (42%), Gaps = 35/313 (11%)
Query: 60 HGK---SWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVE 116
HG+ SW+ P + Q F N AE IL+ + + D + W ++NG +SVRSAYRL
Sbjct: 75 HGRALISWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRL-AA 133
Query: 117 ELIDVSHLRRPGN------WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTN 170
+L+++ G W+ IW KV KVK W + CL T V + + +
Sbjct: 134 QLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDM 193
Query: 171 CESCGADHEDLNHLLFECPFSIHVWN----SAGIWHDVQHAAIHSDSAANTIFSILQNLS 226
C+ C ++ED H L C + +W+ S + D++ + + +F L+ +
Sbjct: 194 CQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVL----GRFWLFDCLEKIP 249
Query: 227 RNIKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDV 286
+ F T W W RN E + S + ++ I + + + Q Q D+
Sbjct: 250 EYEQAMFLMTLWRNWYVRN----ELIHGKSAPPTETSQRFIQSYVD-LLFQIRQAPQADL 304
Query: 287 QQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQF 346
+ +H VPL+ + R + W P G K NVD +F A
Sbjct: 305 ----------VKGKHVVRTVPLKGGPKY--RVLNNHQPCWERPKDGWMKLNVDGSFDASS 352
Query: 347 QRTGIGVCIRDDS 359
+ G+G+ +R+ +
Sbjct: 353 GKGGLGMILRNSA 365
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 103 bits (256), Expect = 1e-20
Identities = 90/361 (24%), Positives = 143/361 (38%), Gaps = 58/361 (16%)
Query: 2 SILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHD-----FTVQNL 56
S+L ++R G R+ IG G TI + +++ + P + D ++ NL
Sbjct: 531 SLLSGIALLRKGTRYVIGDGKTIRL-------GIDNVVDSHPPRPLLTDEQHNGLSLDNL 583
Query: 57 LSQHGKS--WNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLY 114
G S W+ +Q + I L + D L+W G Y+VRS Y L
Sbjct: 584 FQHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGYWLS 643
Query: 115 VEELID-VSHLRRPGNW----QHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPT 169
+ + + + +P IW L + PK+K+ LW + LPT RL +G+
Sbjct: 644 THDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDP 703
Query: 170 NCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSI---LQNLS 226
C C ++E +NH LF CPF+ W + + ++I S++ + I +I LQN +
Sbjct: 704 GCPRCRRENESINHALFTCPFATMAWRLSDT--PLYRSSILSNNIEDNISNILLLLQNTT 761
Query: 227 RNIKQRFAA--TCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQE 284
Q+ W +WK RN ++ N+ E+ V RA+ +W A Q L +
Sbjct: 762 ITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPK 821
Query: 285 DVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSA 344
R GN W P KCN DA+F+
Sbjct: 822 --------------------------------RTTAAGNTTWVKPQMPYIKCNFDASFNV 849
Query: 345 Q 345
Q
Sbjct: 850 Q 850
>ref|NP_914307.1| reverse transcriptase -like protein [Oryza sativa (japonica
cultivar-group)]
Length = 727
Score = 103 bits (256), Expect = 1e-20
Identities = 95/378 (25%), Positives = 154/378 (40%), Gaps = 57/378 (15%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
RSI+R ++ G W +G+G++I I + PW+ G + P + + V +L+
Sbjct: 352 RSIIRGLSALKAGRIWRVGNGSSIDIWEDPWIPAGVTRRPITPRRGTVLN-KVADLIDPA 410
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELID 120
W++PLV+++F A IL P+ TND + W + G YSV+SAY + +E+ +
Sbjct: 411 TGWWDKPLVEEIFWESDARNILAIPVRLD-TNDFVAWHFDTRGMYSVKSAYHV-LEDQRE 468
Query: 121 VSHLRRPGN------------WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCP 168
S ++ G W IW L+ PKVK +W + LP + ++ +
Sbjct: 469 RSAKKQEGGSSSGAVNQRNFEWDKIWSLQCIPKVKQFIWRLAHNSLPLKLNIKRRVPDAE 528
Query: 169 TNCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSRN 228
T C C E+ H +C W + D++ + SA + + +IL+ L +
Sbjct: 529 TLCPVCKRFDENGGHCFLQCKPMKLCWRILCL-EDIRLSLTQLVSARDVVQTILK-LEND 586
Query: 229 IKQRFAATCWSLWKHRNLKIWENVDENSV-QVVDRARNLIADWEEAITLQPATFLQEDVQ 287
+ W W RN K+ D V +VV + + LI D +L+ + +VQ
Sbjct: 587 RRMEVFFLLWVWWYARN-KVNSGEDVIRVEEVVHKVKQLICD---HASLRKGKHPKVNVQ 642
Query: 288 QQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQ 347
+ KW PP G K N D AF A +
Sbjct: 643 RN-----------------------------------KWVPPVDGNLKLNFDGAFRAVNK 667
Query: 348 RTGIGVCIRDDS*TFVLA 365
G +RD VLA
Sbjct: 668 SGGYDFLVRDHRGCAVLA 685
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 102 bits (254), Expect = 2e-20
Identities = 86/370 (23%), Positives = 156/370 (41%), Gaps = 47/370 (12%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
RSIL R ++ G R +G+G++ + PW+ + + S D V +L++
Sbjct: 911 RSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDPRLPLQKHFSVNLDLRVHDLINVE 970
Query: 61 GKSWNEPLVQQMF-SNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVE--- 116
+ ++++F DI + P+ +D VW ++G YSV+S Y L +
Sbjct: 971 DRCRRRDRLEELFYPADIEIIVKRNPVVSM--DDFWVWLHSKSGEYSVKSGYWLAFQTNK 1028
Query: 117 -ELIDVSHLRRPGNW--QHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCES 173
ELI + ++ N + IW SPK+K LW + LP ++ +G+ C+
Sbjct: 1029 PELIREARVQPSTNGLKEKIWSTLTSPKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQV 1088
Query: 174 CGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQ-----NLSRN 228
CG + E +NH+LF C + VW +G+ + S I +L+ +
Sbjct: 1089 CGEEGESINHVLFTCSLARQVWALSGV--PTSQFGFQNSSIFANIQYLLELKGKGLIPEQ 1146
Query: 229 IKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQ 288
IK+ + W LWK+R+ +E + ++ +++ R+ + +W FL +
Sbjct: 1147 IKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRDDVQEW----------FLAQ---- 1192
Query: 289 Q*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQR 348
A+ + A + P + W PP G KCN+ +S + +
Sbjct: 1193 ---ALVASVDAGETVCSAPCPS--------------SWEPPPLGWVKCNISGVWSGKKRV 1235
Query: 349 TGIGVCIRDD 358
G +RDD
Sbjct: 1236 CGGAWVLRDD 1245
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 102 bits (253), Expect = 3e-20
Identities = 82/288 (28%), Positives = 118/288 (40%), Gaps = 30/288 (10%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
R IL R ++R G WSIG G +I + WL+ P D +V +L+
Sbjct: 844 RGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHD 903
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLY-DQVTN---------DCLVWKAERNGCYSVRSA 110
KSWN +++ H P Y DQ+ D LVW ++G Y+ ++
Sbjct: 904 VKSWNVEAIRK-----------HLPQYEDQIRKITINALPLQDSLVWLPVKSGEYTTKTG 952
Query: 111 YRLYVEELIDVSHLRRPGNWQ-HIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPT 169
Y L S L NWQ +IW + SPKVK+ LW +G LP L + +
Sbjct: 953 YALAKLNSFPASQL--DFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEV 1010
Query: 170 NCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTI----FSILQNL 225
C+ CG L HL+ CP++ VW A + + A HS A + L
Sbjct: 1011 TCKRCGQTESSL-HLMLLCPYAKKVWELAPVLFNPSEAT-HSSVALLLVDAKRMVALPPT 1068
Query: 226 SRNIKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEA 273
+ W LWK RN I++N + +V +A W EA
Sbjct: 1069 GLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARAWMEA 1116
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411644|pir||C84530 hypothetical protein
At2g15540 [imported] - Arabidopsis thaliana
Length = 1225
Score = 92.8 bits (229), Expect = 2e-17
Identities = 76/294 (25%), Positives = 128/294 (42%), Gaps = 20/294 (6%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLAN-----GESINGNIPGGSYIHDFTVQN 55
RSI+ ++ ++ G R +IGSG + + PW+ + +SI Y++D
Sbjct: 789 RSIMAAKPLLLSGLRRTIGSGMLTRVWEDPWIPSFPPRPAKSILNIRDTHLYVND----- 843
Query: 56 LLSQHGKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYV 115
L+ K W +Q++ IL +D W ++G Y+V+S Y
Sbjct: 844 LIDPVTKQWKLGRLQELVDPSDIPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGYWAAR 903
Query: 116 EELIDVSHLRRPGN-----WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTN 170
+ L G +W +K + K K+ W GCL T RL + +
Sbjct: 904 DLSRPTCDLPFQGPSVSALQAQVWKIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKV 963
Query: 171 CESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQ----NLS 226
C CGA+ E +NHLLF CP S +W + I ++ + N F + + +++
Sbjct: 964 CPRCGAEEESINHLLFLCPPSRQIWALSPI-PSSEYIFPRNSLFYNFDFLLSRGKEFDIA 1022
Query: 227 RNIKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPAT 280
+I + F W +WK RN I+ENV E+ ++D A W++A + + AT
Sbjct: 1023 EDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQANSKEVAT 1076
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 92.8 bits (229), Expect = 2e-17
Identities = 68/291 (23%), Positives = 113/291 (38%), Gaps = 62/291 (21%)
Query: 64 WNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELIDVSH 123
WN L+ Q+ S D +++ L V D LVW +G Y+
Sbjct: 1319 WNAHLISQLVSPDDHRFVMNHHLSRIVHQDKLVWNYSSSGDYT----------------- 1361
Query: 124 LRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCGADHEDLNH 183
+W L + PK+K +LW LPT RL +G+ +C C + E +NH
Sbjct: 1362 ---------LWKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINH 1412
Query: 184 LLFECPFSIHVWNSAGI-WHDVQHAAIHSDSAANTIFSILQNLSRNIKQRFAA--TCWSL 240
+LF CP++ +W + W + ++ + + + N + N +QR A W L
Sbjct: 1413 VLFTCPYAASIWGLSNFPWLPGHTFSQDTEENISFLINSFSNNTLNTEQRLAPFWLIWRL 1472
Query: 241 WKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ*PAVPLQLHAQ 300
WK RN ++ E+ +VV + + +W +++
Sbjct: 1473 WKARNNLVFNKFSESCSRVVTQTEAEVNEWLQSV-------------------------N 1507
Query: 301 HQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSA-QFQRTG 350
++ A L +H N++W P KCN DA F+ Q TG
Sbjct: 1508 RREDASVLTRSSH-------RANVRWKKPVFPLVKCNFDAGFTGNNTQSTG 1551
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.138 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 751,749,310
Number of Sequences: 2540612
Number of extensions: 31803213
Number of successful extensions: 116983
Number of sequences better than 10.0: 275
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 116409
Number of HSP's gapped (non-prelim): 376
length of query: 413
length of database: 863,360,394
effective HSP length: 130
effective length of query: 283
effective length of database: 533,080,834
effective search space: 150861876022
effective search space used: 150861876022
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 76 (33.9 bits)
Medicago: description of AC134322.1