BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134049.5 + phase: 0
(162 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 92 6e-18
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 91 1e-17
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 90 2e-17
gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cult... 89 3e-17
emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana] ... 89 5e-17
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 88 7e-17
ref|XP_470528.1| Putative retrovirus-related pol polyprotein [Or... 88 9e-17
emb|CAE01742.2| OSJNBb0056F09.5 [Oryza sativa (japonica cultivar... 87 2e-16
ref|NP_916849.1| retrovirus-related pol polyprotein from transpo... 86 5e-16
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 84 1e-15
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 82 5e-15
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 82 5e-15
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 80 2e-14
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 79 6e-14
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu... 78 7e-14
gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cult... 78 9e-14
gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis ... 77 2e-13
emb|CAA37918.1| unnamed protein product [Arabidopsis thaliana] g... 75 8e-13
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 74 1e-12
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 74 2e-12
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 91.7 bits (226), Expect = 6e-18
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 18/144 (12%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGK-EGTVTLEEVQAALRT 64
EF +I+ DLEN+ V + DED+AILLL ALP++F+ KDT+ Y + +TL+EV AA+ +
Sbjct: 139 EFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSILTLDEVAAAIYS 198
Query: 65 KEL----------TKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKL 114
KEL +++ L + NE + G G+G +G SK K C+ C +
Sbjct: 199 KELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKK----KPGCWTCGEE 254
Query: 115 GHFKRDCPEDNE---SSAQVVSEE 135
GHF+ CP N+ +QVV E
Sbjct: 255 GHFRSSCPNQNKPQFKQSQVVKGE 278
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25412027|pir||G84599 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 838
Score = 90.9 bits (224), Expect = 1e-17
Identities = 52/150 (34%), Positives = 87/150 (57%), Gaps = 10/150 (6%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + +F K++ DLEN++V + DED+AI+LL +LP+ F+ KDT+ YGK T+ L+E+ A
Sbjct: 132 ENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALDEITGA 190
Query: 62 LRTKEL---TKSKDLRADED-----NEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHK 113
+R+K L K L+ D + G S + R N+ S+S +++K C+ C K
Sbjct: 191 IRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSER-NKSQSRSKSREKKVCWVCGK 249
Query: 114 LGHFKRDCPEDNESSAQVVSEEYGDAGALV 143
GHFK+ C E + + + E G++ ++
Sbjct: 250 EGHFKKQCYVWKEKNKKGNNSEKGESSNVI 279
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 89.7 bits (221), Expect = 2e-17
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 8/151 (5%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
+ L FN ++ L N+ V++E+EDKAILLL +LP S+++ T+L+GK T+ L++V +
Sbjct: 119 LSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKT-TIELKDVTS 177
Query: 61 AL------RTKELTKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYK-CFKCHK 113
AL R K + + L + S N G G RG SK+ +K + + C+ C++
Sbjct: 178 ALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQ 237
Query: 114 LGHFKRDCPEDNESSAQVVSEEYGDAGALVV 144
GHFKRDCP + + ++ D A +V
Sbjct: 238 PGHFKRDCPNPRKGKGETSGQKNDDNTAAMV 268
>gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534554|ref|NP_921579.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 382
Score = 89.4 bits (220), Expect = 3e-17
Identities = 47/116 (40%), Positives = 76/116 (65%), Gaps = 3/116 (2%)
Query: 7 FNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKE 66
FN+++ DL ++V+L+DEDKAI+LLC+LP S+E T+ +GK+ TV EE+ ++L ++
Sbjct: 126 FNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKD-TVKTEEIISSLLARD 184
Query: 67 LTKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCP 122
L +SK A + ++G S+ + G SKS K +C+KCH+ GH +R+CP
Sbjct: 185 LRRSKKNEATKASQGKSLLVKDKHDH-EAGVSKSKEKGA-RCYKCHEFGHIRRNCP 238
>emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana]
gi|4539406|emb|CAB40039.1| putative retrotransposon
[Arabidopsis thaliana] gi|7444416|pir||T04181
hypothetical protein F7L13.40 - Arabidopsis thaliana
Length = 1230
Score = 88.6 bits (218), Expect = 5e-17
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 17/165 (10%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGK-EGTVTLEEVQAALRT 64
EF +++ DLEN V + DED+AILLL +LP+ F+ KDT+ YG T++++EV AA+ +
Sbjct: 137 EFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLSVDEVVAAIYS 196
Query: 65 KEL---TKSKDLRAD---------EDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCH 112
KEL + K +R + G+S K +GN+G S+S +K C+ C
Sbjct: 197 KELELGSNKKSIRGQAEGLYVKDKPETRGMSEQK----EKGNKGRSRSRSKGWKGCWICG 252
Query: 113 KLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDEGEGSHL 157
+ GHFK CP + + + G G EG G ++
Sbjct: 253 EEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYV 297
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 88.2 bits (217), Expect = 7e-17
Identities = 62/162 (38%), Positives = 91/162 (55%), Gaps = 21/162 (12%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + +F K++ DLEN++V + DED+AI+LL +LPR F+ K+T+ Y K T+ LEE+ +A
Sbjct: 140 ENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKT-TLHLEEITSA 198
Query: 62 LRTKEL---TKSKDLRADED-----NEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHK 113
+R+K L K L+ + D + G S ++G G + N+ SKS K C+ C K
Sbjct: 199 IRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNK-NKSRSKSKGAGK-TCWICGK 256
Query: 114 LGHFKRDCPEDNESSAQVVSEEYG----------DAGALVVS 145
GHFK+ C E + Q + E G DA ALVVS
Sbjct: 257 EGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVS 298
>ref|XP_470528.1| Putative retrovirus-related pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|27436748|gb|AAO13467.1| Putative
retrovirus-related pol polyprotein [Oryza sativa
(japonica cultivar-group)]
Length = 556
Score = 87.8 bits (216), Expect = 9e-17
Identities = 48/116 (41%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Query: 7 FNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKE 66
FN+++ DL ++V+L+DEDKAI+LLC+LP SFE T+ +GK+ TV EE+ ++L ++
Sbjct: 257 FNQLVVDLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTLTHGKD-TVKTEEIISSLLARD 315
Query: 67 LTKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCP 122
L +SK A E ++ S+ G SKS K +C+KCH+ GH +R+CP
Sbjct: 316 LRRSKKNEAMEASQAESLLV-KAKHDHEAGVSKSKEKGA-RCYKCHEFGHIRRNCP 369
>emb|CAE01742.2| OSJNBb0056F09.5 [Oryza sativa (japonica cultivar-group)]
gi|50922273|ref|XP_471497.1| OSJNBb0056F09.5 [Oryza
sativa (japonica cultivar-group)]
Length = 371
Score = 87.0 bits (214), Expect = 2e-16
Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 12/154 (7%)
Query: 7 FNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKE 66
FN+++ DL ++V+L+DEDKAI+LLC+LP S+E T+++GK+ T+ EE+ ++L ++
Sbjct: 146 FNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTTLMHGKD-TIKTEEIISSLLARD 204
Query: 67 LTKSKDLRADEDN--EGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCP-- 122
L +SK A E + E L V + G S + G +C+KCH+ GH +R+CP
Sbjct: 205 LRRSKKNEAMEASQAESLLVKAKHDHEAGVLKSKEKG----ARCYKCHEFGHIRRNCPLL 260
Query: 123 ---EDNESSAQVVSEEYGDAGALVVSCWEEDEGE 153
+D +S ++ + +++ E GE
Sbjct: 261 KKRKDGIASLAARGDDSDSSSHEILTVSNEKSGE 294
>ref|NP_916849.1| retrovirus-related pol polyprotein from transposon TNT 1-94-like
[Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 85.5 bits (210), Expect = 5e-16
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 7 FNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKE 66
FN+++ DL ++V L DEDKAI+LLC+LP S+E T+ +GK+ T+ EE+ ++L ++
Sbjct: 126 FNQLVVDLSKLDVNLYDEDKAIILLCSLPPSYEHVVTTLTHGKD-TIKTEEIISSLLARD 184
Query: 67 LTKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCP---- 122
L +SK A E ++ S+ G SKS K +C+KCH+ GH +R+CP
Sbjct: 185 LRRSKKNEAMEASQAESLLV-KAKHDHEAGVSKSNEKGA-RCYKCHEFGHIRRNCPLLKK 242
Query: 123 -EDNESSAQVVSEEYGDAGALVVSCWEEDEGE 153
+D +S ++ + +++ E GE
Sbjct: 243 RKDGIASLAARGDDSDSSSHEILTVSNEKSGE 274
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411934|pir||G84581 copia-like retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1137
Score = 84.0 bits (206), Expect = 1e-15
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 12/160 (7%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + EF K++ DL N+++Q+ DE +AIL+L ALP S++ K+T+ YG+EG + L++V +A
Sbjct: 105 ENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREG-IKLDDVISA 163
Query: 62 LRTKEL-TKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRD 120
++KEL + + EGL V +G RG+ G + + K C+ C K GHFKR
Sbjct: 164 AKSKELELRDSSGGSRPVGEGLYV-RGKSQARGSDGPKST--EGKKVCWICGKEGHFKRQ 220
Query: 121 C---PEDNESS----AQVVSEEYGDAGALVVSCWEEDEGE 153
C E N+++ +V ++ D LV S EG+
Sbjct: 221 CYKWLEKNKANGAGETALVKDDAQDLVGLVASEVNMSEGK 260
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 82.0 bits (201), Expect = 5e-15
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 8/151 (5%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
+ L N ++ L N+ V++E+EDK I+LL +LP S+++ T+L+GK+ ++ L++V +
Sbjct: 120 LSHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKD-SIQLKDVTS 178
Query: 61 ALRTKELTKSKDLRADE----DNEGLSV--SKGNGGGRGNRGSSKSGNKDKYK-CFKCHK 113
AL E + K + ++ G S S N G G RG SK +K K + C+ C +
Sbjct: 179 ALLLNEKMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQ 238
Query: 114 LGHFKRDCPEDNESSAQVVSEEYGDAGALVV 144
GHFKRDCP + ++ D A +V
Sbjct: 239 PGHFKRDCPNPKRGKGESSGQKNDDNTAAMV 269
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 82.0 bits (201), Expect = 5e-15
Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 30/172 (17%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F +I+ DLE++EV+ ++ED ++LLC+LP S+ +F+DT+LY ++ T+TL+EV
Sbjct: 325 MDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRD-TLTLKEVYD 383
Query: 61 ALRTKELTK----------------------SKDLRADEDNEGLSVSKGNGGGRGNRGSS 98
AL KE K K+ + ++ S +G RG S
Sbjct: 384 ALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSC 443
Query: 99 KSGNKDKYKCFKCHKL-------GHFKRDCPEDNESSAQVVSEEYGDAGALV 143
K +D + F+C KL G + ++ E A VV++E DA LV
Sbjct: 444 KYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLV 495
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 80.1 bits (196), Expect = 2e-14
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 19/134 (14%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTV-TLEEVQAALRT 64
EF I+ DLEN+ V + DED+AILLL +LP+ F+ KDT+ Y TV +L+EV AA+ +
Sbjct: 139 EFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTVLSLDEVAAAIYS 198
Query: 65 KEL---TKSKDLRAD---------EDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCH 112
+EL + K ++ +N G S K G G+ ++ SK G C+ C
Sbjct: 199 RELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKSKSKRG------CWICG 252
Query: 113 KLGHFKRDCPEDNE 126
+ GH K CP N+
Sbjct: 253 EDGHLKSTCPNKNK 266
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 78.6 bits (192), Expect = 6e-14
Identities = 54/172 (31%), Positives = 86/172 (49%), Gaps = 30/172 (17%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F +I+ DLE++EV+ +++D A++LLC+LP S+ +F+DT+LY ++ T+TL+EV
Sbjct: 118 MDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRD-TLTLKEVYD 176
Query: 61 ALRTKELTK----------------------SKDLRADEDNEGLSVSKGNGGGRGNRGSS 98
AL KE K K+ ++ S +G RG S
Sbjct: 177 ALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSC 236
Query: 99 KSGNKDKYKCFKCHKL-------GHFKRDCPEDNESSAQVVSEEYGDAGALV 143
K +D + KC KL G + ++ E A VV++E DA LV
Sbjct: 237 KYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLV 288
>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1211
Score = 78.2 bits (191), Expect = 7e-14
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 30/172 (17%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F KI+ DLE++EV+ ++ED ++LLC+LP S+ +F+DT+LY + T+TL+EV
Sbjct: 118 MDHLSAFKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRDTILYSCD-TLTLKEVYD 176
Query: 61 ALRTKELTK----------------------SKDLRADEDNEGLSVSKGNGGGRGNRGSS 98
AL KE K K+ + ++ S +G RG S
Sbjct: 177 ALHAKEKIKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKSSSSYRGRSKSRGRYKSC 236
Query: 99 KSGNKDKYKCFKCHKL-------GHFKRDCPEDNESSAQVVSEEYGDAGALV 143
K +D + +C KL G + ++ E A VV++E DA LV
Sbjct: 237 KYYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLV 288
>gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1241
Score = 77.8 bits (190), Expect = 9e-14
Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 32/173 (18%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F +I+ DLE++EV+ ++ED ++LLC+LP S+ +F+DT+LY ++ T+TL+EV
Sbjct: 27 MDHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRD-TLTLKEVYD 85
Query: 61 ALRTKELTKSKDLRADEDN---EGLSV-----SKGNGGGRGNRGSS----KSGNKDKYK- 107
AL KE K K + ++ N EGL V K ++ SS +S ++ +YK
Sbjct: 86 ALHAKEKMK-KMVPSEGSNSQAEGLVVRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYKS 144
Query: 108 CFKCHKLGHFKRDC-----------------PEDNESSAQVVSEEYGDAGALV 143
C C + GH +C ++ E A VV++E DA LV
Sbjct: 145 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLV 197
>gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
gi|25301707|pir||E86490 hypothetical protein F28L22.3 -
Arabidopsis thaliana
Length = 1356
Score = 76.6 bits (187), Expect = 2e-13
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 22/177 (12%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
+ + EF +I+ +L ++E+Q+++E +AIL+L +LP S K T+ YG + T+T+++V ++
Sbjct: 143 QNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNK-TLTVQDVTSS 201
Query: 62 LRT--KELTKSKDLRADE------DNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHK 113
++ +EL ++ DL + G + + N G +G S+S +K K C+ C K
Sbjct: 202 AKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTKVPCWYCKK 261
Query: 114 LGHFKRDC-------PEDNESSAQVVSEEYGDAGALVVS------CWEEDEGEGSHL 157
GH K+DC + + A V++E+ + AL V+ W D G SH+
Sbjct: 262 EGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEALSVNEQMVKDLWILDSGCTSHM 318
>emb|CAA37918.1| unnamed protein product [Arabidopsis thaliana] gi|99727|pir||S23313
hypothetical protein 1 - Arabidopsis thaliana
retrotransposon Ta1-2 (strain Kashmir) (fragment)
Length = 560
Score = 74.7 bits (182), Expect = 8e-13
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + EF KI+ +L ++E+ + +E +AIL L L + K T+ YG + ++L++V ++
Sbjct: 139 ENVNEFLKIVAELSSLEINVVEEVRAILFLNGLSSRYSQLKHTLKYGNKA-LSLQDVISS 197
Query: 62 LRT--KELTKSKD--------LRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKC 111
R+ +EL + K+ L +E L+ ++ G RG SKS + K C+ C
Sbjct: 198 ARSLERELDEQKETDKNTSTVLYTNERGRPLTRNQNQNKGGQGRGRSKSNSNAKLTCWYC 257
Query: 112 HKLGHFKRDC-------PEDNESSAQVVSEEYGDAGALVVS------CWEEDEGEGSHL 157
K GH K+DC +N A V++E+ + AL V+ WE D G SH+
Sbjct: 258 KKEGHVKKDCFARKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWELDSGCPSHM 316
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 74.3 bits (181), Expect = 1e-12
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 30/172 (17%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F +I+ DLE+IEV+ ++ED ++LLC+LP S+ +F+DT+LY + T+ L+EV
Sbjct: 153 MDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHD-TLILKEVYD 211
Query: 61 ALRTKELTK----------------------SKDLRADEDNEGLSVSKGNGGGRGNRGSS 98
AL KE K K+ + ++ S +G RG S
Sbjct: 212 ALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSC 271
Query: 99 KSGNKDKYKCFKCHKL-------GHFKRDCPEDNESSAQVVSEEYGDAGALV 143
K +D + +C KL G + ++ E A VV++E D LV
Sbjct: 272 KYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLV 323
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301702|pir||E84601 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 73.6 bits (179), Expect = 2e-12
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYG-KEGTVTLEEVQAALRT 64
EF +I+ DLEN V + DED+AILLL +LP+ F+ +DT+ YG T++L+EV AA+ +
Sbjct: 139 EFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEVVAAIYS 198
Query: 65 KELTKSKDLRADEDN-EGLSV-----SKGNGGGRGNRGS---SKSGNKDKYKCFKCHKLG 115
KEL + ++ + EGL V ++G RGN + S+S ++ K C+ C G
Sbjct: 199 KELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSRSKKGCWIC---G 255
Query: 116 HFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDEGEGSHL 157
+E++ VSE + W D G H+
Sbjct: 256 ESSNGSSNYSEANGLYVSEALSSTDIHLEDEWVMDTGCSYHM 297
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.310 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 290,157,464
Number of Sequences: 2540612
Number of extensions: 12511977
Number of successful extensions: 56480
Number of sequences better than 10.0: 1118
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 559
Number of HSP's that attempted gapping in prelim test: 54862
Number of HSP's gapped (non-prelim): 1768
length of query: 162
length of database: 863,360,394
effective HSP length: 118
effective length of query: 44
effective length of database: 563,568,178
effective search space: 24796999832
effective search space used: 24796999832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC134049.5