BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134049.15 + phase: 0 /pseudo
(300 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86301 probable retroelement polyprotein [imported] - Arabi... 65 2e-09
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 64 5e-09
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 63 9e-09
gb|AAK51235.1| polyprotein [Arabidopsis thaliana] 63 9e-09
gb|AAT38799.1| putative gag-pol polyprotein [Solanum demissum] 63 1e-08
gb|AAD15534.1| putative retroelement pol polyprotein [Arabidopsi... 62 2e-08
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 62 2e-08
gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|A... 62 2e-08
gb|AAT39281.1| putative late blight resistance protein [Solanum ... 61 3e-08
gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|2... 61 5e-08
emb|CAB77897.1| putative reverse transcriptase [Arabidopsis thal... 61 5e-08
emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|30212... 61 5e-08
emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis th... 61 5e-08
gb|AAU89730.1| putative polyprotein [Solanum tuberosum] 61 5e-08
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 61 5e-08
ref|NP_194047.2| protein kinase family protein [Arabidopsis thal... 61 5e-08
ref|XP_474787.1| OSJNBb0026E15.10 [Oryza sativa (japonica cultiv... 60 6e-08
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 60 8e-08
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 60 8e-08
ref|XP_470025.1| putative polyprotein [Oryza sativa (japonica cu... 60 1e-07
>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989054|gb|AAG10817.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 65.1 bits (157), Expect = 2e-09
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYS-----HHALNQVYTDS*SLF 143
LL+A+A + L QLD+++ F++G LDE++YM +PP YS N V SL+
Sbjct: 1007 LLIAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLPPGYSPRQGDSFPPNAVCRLKKSLY 1066
Query: 144 MVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLIL 197
+ S + L S L +LG+ QS H+LFT+ ++ ++ +L++VD++I+
Sbjct: 1067 GLKQASRQWYLKFSES-LKALGFTQSSGDHTLFTR-KSKNSYMAVLVYVDDIII 1118
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301698|pir||C84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1501
Score = 63.9 bits (154), Expect = 5e-09
Identities = 41/119 (34%), Positives = 67/119 (55%), Gaps = 3/119 (2%)
Query: 83 LTGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SL 142
+T V LL +A Q+ ++Q+DV++ F+HG+L+E+VYM +PP + H ++V SL
Sbjct: 1079 MTTVRTLLRNVAANQW-EVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSL 1137
Query: 143 FMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ + + S L G+ QS +SLF+ N V LI+VD+L++ GND
Sbjct: 1138 YGLKQAPRCWFKKLSDSLL-RFGFVQSYEDYSLFSYTRNNIELRV-LIYVDDLLICGND 1194
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301674|pir||D84639 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1156
Score = 63.2 bits (152), Expect = 9e-09
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 83 LTGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SL 142
+T V LL +A Q+ ++Q+DVN+ F+HG+LDE+VYM +PP + H ++V SL
Sbjct: 726 MTTVRTLLRLVAANQW-EVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKVCRLRKSL 784
Query: 143 FMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ + + S L G+ Q +S F+ N V L++VD+L++ GND
Sbjct: 785 YGLKQAPRCWFKKL-SDALLRFGFVQGHEDYSFFSYTRNGIELRV-LVYVDDLLICGND 841
>gb|AAK51235.1| polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 63.2 bits (152), Expect = 9e-09
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 84 TGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SL 142
T + L+L +AT + ++ QLDV++ F+HGEL E VYM+ PP F + V + +L
Sbjct: 973 TATIRLVLDVATAKGWNIKQLDVSNAFLHGELKEPVYMLQPPGFVDQEKPSYVCRLTKAL 1032
Query: 143 FMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ + ++ S++L G++ S+S SLFT N K V+L++VD+++L G+D
Sbjct: 1033 YGLKQAPRAW-FDTISNYLLDFGFSCSKSDPSLFTYHKNGKTL-VLLLYVDDILLTGSD 1089
>gb|AAT38799.1| putative gag-pol polyprotein [Solanum demissum]
Length = 297
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/114 (33%), Positives = 64/114 (55%), Gaps = 2/114 (1%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMVSI 147
LL+++ + LHQLD+ + F+HGEL E+VYM PP F + N V SL+ +
Sbjct: 122 LLISLTVMYHWPLHQLDIKNAFLHGELAEEVYMEQPPGFVAQGESNLVCRLKRSLYGLK- 180
Query: 148 RSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+S SS + G +QS++ HS+F + + + ++++VDN+I+ G D
Sbjct: 181 QSLRARFGRISSVVQQFGMSQSKAYHSVFYRHNGPEKNMYLVVYVDNIIITGKD 234
>gb|AAD15534.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411300|pir||F84485 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1664
Score = 62.4 bits (150), Expect = 2e-08
Identities = 41/116 (35%), Positives = 72/116 (61%), Gaps = 7/116 (6%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMV-- 145
++L++ T L Q+DV + F+ GEL+EKVYM PP +A N+V+ +++ +
Sbjct: 984 VVLSLTTNLEWDLWQMDVKNAFLQGELEEKVYMKPPPGLEDINAPNKVFKLKKAIYGLKQ 1043
Query: 146 SIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
S R+ + L S+ L G+ +S++ ++LFT + +QK VIL++VD++I+ GND
Sbjct: 1044 SPRAWYHKL---STTLMGRGFKRSEADNTLFT-LPSQKGIVVILVYVDDIIISGND 1095
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|7444418|pir||T00499 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1496
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/112 (32%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 90 LLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIRS 149
+LA+A + +HQ+DV++ F+HG+L+E+VYM +PP + ++V SL+ +
Sbjct: 1080 ILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAP 1139
Query: 150 ASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ S+ L ++G+ QS +SLF+ + N +L++VD+LI+ GN+
Sbjct: 1140 RCWFSKL-STALRNIGFTQSYEDYSLFS-LKNGDTIIHVLVYVDDLIVAGNN 1189
>gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|AAM98191.1| unknown
protein [Arabidopsis thaliana]
Length = 776
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/112 (32%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 90 LLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIRS 149
+LA+A + +HQ+DV++ F+HG+L+E+VYM +PP + ++V SL+ +
Sbjct: 360 ILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAP 419
Query: 150 ASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ S+ L ++G+ QS +SLF+ + N +L++VD+LI+ GN+
Sbjct: 420 RCWFSKL-STALRNIGFTQSYEDYSLFS-LKNGDTIIHVLVYVDDLIVAGNN 469
>gb|AAT39281.1| putative late blight resistance protein [Solanum demissum]
Length = 1630
Score = 61.2 bits (147), Expect = 3e-08
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
L+L I T +HQ+DVN+ F+ G L+E+VYM PP + +L S + +
Sbjct: 930 LVLTIVTQYNWPIHQIDVNNAFLQGSLEEEVYMRQPPGFEDQSL--------STHVCKLN 981
Query: 149 SASYSLPCP--------SSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
Y L S+L ++G+ +SQS SLF +HN +LI+VD +I+ GN
Sbjct: 982 KVIYGLKQAPRAWYNELKSYLLTVGFVKSQSDSSLFI-LHNFGFTVYVLIYVDAIIITGN 1040
>gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|25301686|pir||F96610
probable polyprotein T8L23.26 [imported] - Arabidopsis
thaliana
Length = 1468
Score = 60.8 bits (146), Expect = 5e-08
Identities = 38/112 (33%), Positives = 64/112 (56%), Gaps = 2/112 (1%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
L L +A + H+HQ+DV++ F+HG+L E+VYM +P + ++V SL+ +
Sbjct: 1051 LFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQA 1110
Query: 149 SASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
+ SS L G+ QS S +SLF+ +N F +L++VD+LI+ G+
Sbjct: 1111 PRCWFSKL-SSALKQYGFTQSLSDYSLFS-YNNDGIFVHVLVYVDDLIISGS 1160
>emb|CAB77897.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|3377848|gb|AAC28230.1| contains similarity to reverse
transcriptases (Pfam: rvt.hmm, score: 12.22)
[Arabidopsis thaliana] gi|7487468|pir||T01810
hypothetical protein T27D20.7 - Arabidopsis thaliana
Length = 403
Score = 60.8 bits (146), Expect = 5e-08
Identities = 41/116 (35%), Positives = 72/116 (61%), Gaps = 7/116 (6%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMV-- 145
++L++AT L Q+DV + F+ GEL+E+VYM PP +A N+V+ +++ +
Sbjct: 69 VVLSLATNLEWDLWQMDVKNAFLQGELEEEVYMKPPPGLEVINAPNKVFKLKKAIYGLKQ 128
Query: 146 SIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
S R+ + L S+ L G+ S++ ++LFT + +QK VIL++VD++I+ GND
Sbjct: 129 SPRAWYHKL---STTLMGRGFKTSEADNTLFT-LPSQKGIVVILVYVDDIIISGND 180
>emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|3021268|emb|CAA18463.1|
putative protein [Arabidopsis thaliana]
gi|7485945|pir||T04833 hypothetical protein F21P8.50 -
Arabidopsis thaliana
Length = 1240
Score = 60.8 bits (146), Expect = 5e-08
Identities = 40/118 (33%), Positives = 65/118 (54%), Gaps = 7/118 (5%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHH-----ALNQVYTDS*SLF 143
L+LAI+ LHQLD+++ F++G+LDE++YM +PP Y+ N V S++
Sbjct: 178 LILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIY 237
Query: 144 MVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ S + L S L G+ QS S H+ F KI F +L++VD++I+ N+
Sbjct: 238 GLKQASRQWFLKF-SVTLIGFGFVQSHSDHTYFLKI-TATLFLCVLVYVDDIIICSNN 293
>emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|2961349|emb|CAA18107.1| LTR retrotransposon like
protein [Arabidopsis thaliana] gi|11358464|pir||T49111
hypothetical retrovirus-related pol polyprotein
AT4g22040 - Arabidopsis thaliana
Length = 1109
Score = 60.8 bits (146), Expect = 5e-08
Identities = 38/112 (33%), Positives = 64/112 (56%), Gaps = 2/112 (1%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
L L +A + H+HQ+DV++ F+HG+L E+VYM +P + ++V SL+ +
Sbjct: 692 LFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQA 751
Query: 149 SASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
+ SS L G+ QS S +SLF+ +N F +L++VD+LI+ G+
Sbjct: 752 PRCWFSKL-SSALKQYGFTQSLSDYSLFS-YNNDGVFVHVLVYVDDLIISGS 801
>gb|AAU89730.1| putative polyprotein [Solanum tuberosum]
Length = 1280
Score = 60.8 bits (146), Expect = 5e-08
Identities = 39/112 (34%), Positives = 63/112 (55%), Gaps = 2/112 (1%)
Query: 90 LLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIRS 149
LL IA + + QLDVN+ F+HGEL E+VYM PP + + N V SL+ + S
Sbjct: 821 LLTIAIKKGWRMSQLDVNNAFLHGELHEEVYMRFPPGFPPPSPNHVCLLRKSLYGLKQAS 880
Query: 150 ASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ + L GY+ S + +SLF K N ++++++VD+++L G+D
Sbjct: 881 RQWYARLAGA-LAYKGYSSSLNDYSLFFKT-NGALISILVVYVDDILLTGSD 930
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 60.8 bits (146), Expect = 5e-08
Identities = 38/112 (33%), Positives = 64/112 (56%), Gaps = 2/112 (1%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
L L +A + H+HQ+DV++ F+HG+L E+VYM +P + ++V SL+ +
Sbjct: 692 LFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQA 751
Query: 149 SASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
+ SS L G+ QS S +SLF+ +N F +L++VD+LI+ G+
Sbjct: 752 PRCWFSKL-SSALKQYGFTQSLSDYSLFS-YNNDGVFVHVLVYVDDLIISGS 801
>ref|NP_194047.2| protein kinase family protein [Arabidopsis thaliana]
Length = 1262
Score = 60.8 bits (146), Expect = 5e-08
Identities = 40/118 (33%), Positives = 65/118 (54%), Gaps = 7/118 (5%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHH-----ALNQVYTDS*SLF 143
L+LAI+ LHQLD+++ F++G+LDE++YM +PP Y+ N V S++
Sbjct: 178 LILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIY 237
Query: 144 MVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ S + L S L G+ QS S H+ F KI F +L++VD++I+ N+
Sbjct: 238 GLKQASRQWFLKF-SVTLIGFGFVQSHSDHTYFLKI-TATLFLCVLVYVDDIIICSNN 293
>ref|XP_474787.1| OSJNBb0026E15.10 [Oryza sativa (japonica cultivar-group)]
gi|38344222|emb|CAE03692.2| OSJNBb0026E15.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/113 (33%), Positives = 66/113 (57%), Gaps = 3/113 (2%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMVSI 147
LLLA+A Q +H +DV F++GEL E+VY+ PP F + N+VY +L+ +
Sbjct: 1026 LLLAVAAHQGWQVHHMDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLHKALYGLRQ 1085
Query: 148 RSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
+++ SS L SLG+ +S S H ++T+ + ++ ++VD+LI+ G+
Sbjct: 1086 APRAWNAKLDSSLL-SLGFHRSSSEHGVYTRTRGGRRL-MVGVYVDDLIITGD 1136
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301700|pir||G84542 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 60.1 bits (144), Expect = 8e-08
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 18/120 (15%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
L L +A + +HQ+DV++ F+HG+L E+VYM +PP + N+V +R
Sbjct: 916 LFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKV---------CRLR 966
Query: 149 SASYSLP----CPSSFLTS----LGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
A Y L C LT+ G+ QS + +SLFT + ILI+VD+LI+ GN
Sbjct: 967 KALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIK-ILIYVDDLIITGN 1025
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444421|pir||A71444 probable
LTR retrotransposon - Arabidopsis thaliana
Length = 1433
Score = 60.1 bits (144), Expect = 8e-08
Identities = 38/126 (30%), Positives = 73/126 (57%), Gaps = 14/126 (11%)
Query: 83 LTGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSH--------HALNQ 134
LT V +LL A ++ +HQLD+++ F++G+LDE++YM +PP Y+ HA+ +
Sbjct: 1004 LTSVRMMLLLAAKMKW-SVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICR 1062
Query: 135 VYTDS*SLFMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDN 194
++ S++ + S + L S+ L +G+ +S + H+LF K N +L++VD+
Sbjct: 1063 LHK---SIYGLKQASRQWYLKL-SNTLKGMGFQKSNADHTLFIKYANGV-LMGVLVYVDD 1117
Query: 195 LILPGN 200
+++ N
Sbjct: 1118 IMIVSN 1123
>ref|XP_470025.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30103001|gb|AAP21414.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1393
Score = 59.7 bits (143), Expect = 1e-07
Identities = 33/106 (31%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 101 LHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMVSIRSASYSLPCPSS 159
LHQLDV + F+HG+L E+VYM +PP F + + +V SL+ + +S
Sbjct: 988 LHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQTVGKVCKLKKSLYGLK-QSPRAWFDRFRH 1046
Query: 160 FLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND*QKL 205
+ +GY+Q H++F K H + T++ ++VD++++ G+D +++
Sbjct: 1047 AVCDMGYSQCNGDHTVFYK-HRGTHITILAVYVDDIVITGDDVEEI 1091
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.351 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,354,635
Number of Sequences: 2540612
Number of extensions: 15146533
Number of successful extensions: 44768
Number of sequences better than 10.0: 682
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 44027
Number of HSP's gapped (non-prelim): 719
length of query: 300
length of database: 863,360,394
effective HSP length: 127
effective length of query: 173
effective length of database: 540,702,670
effective search space: 93541561910
effective search space used: 93541561910
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 75 (33.5 bits)
Medicago: description of AC134049.15