BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133780.7 + phase: 0
(192 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08282.1| unnamed protein product [Arabidopsis thaliana] 246 2e-64
gb|AAM62841.1| unknown [Arabidopsis thaliana] gi|22136544|gb|AAM... 241 6e-63
ref|NP_908342.1| P0672D08.29 [Oryza sativa (japonica cultivar-gr... 229 3e-59
ref|XP_549819.1| unknown protein [Oryza sativa (japonica cultiva... 224 1e-57
ref|XP_493875.1| rice EST BE041002 corresponds to a region of th... 219 4e-56
ref|NP_001003269.1| signal sequence receptor beta subunit [Canis... 64 3e-09
ref|NP_001006561.1| similar to glycoprotein 25H [Gallus gallus] ... 60 3e-08
ref|NP_001015533.1| signal sequence receptor, beta (translocon-a... 60 4e-08
gb|AAH74550.1| MGC69435 protein [Xenopus tropicalis] gi|52345504... 60 4e-08
gb|AAH75915.1| Signal sequence receptor, beta [Danio rerio] gi|5... 60 4e-08
gb|AAK61351.1| translocon-associated protein beta [Danio rerio] 60 4e-08
emb|CAF90806.1| unnamed protein product [Tetraodon nigroviridis] 60 4e-08
gb|AAH46938.1| MGC53499 protein [Xenopus laevis] gi|13194764|gb|... 59 6e-08
emb|CAH89317.1| TRAP beta protein [Gallus gallus] 58 2e-07
gb|AAH00341.1| SSR2 protein [Homo sapiens] 57 2e-07
sp|P43308|SSRB_HUMAN Translocon-associated protein beta subunit ... 57 2e-07
emb|CAH72632.1| signal sequence receptor, beta (translocon-assoc... 57 2e-07
emb|CAH72631.1| signal sequence receptor, beta (translocon-assoc... 57 2e-07
ref|XP_513870.1| PREDICTED: hypothetical protein XP_513870 [Pan ... 57 2e-07
emb|CAE46211.1| hypothetical protein [Homo sapiens] 57 2e-07
>dbj|BAB08282.1| unnamed protein product [Arabidopsis thaliana]
Length = 193
Score = 246 bits (629), Expect = 2e-64
Identities = 118/192 (61%), Positives = 155/192 (80%)
Query: 1 MADPISKPLIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGT 60
MA ++K LI+ + + + S A+S+VPF+V HKKA+LNRLK+GAERVSV+ DIYNQG+
Sbjct: 1 MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60
Query: 61 STAYDVSLSDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIK 120
S+AYDV+L+D+SW F V++G TSK+WE+LDAGG+LSH+ ELEAK KGVF G PA++
Sbjct: 61 SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120
Query: 121 FRVPTSAALQEAYSTPILPLDVLADRAPEKKFEWRLLAKYGSLISVISIIVMFVYLVATP 180
FR+PT ALQEAYSTP+LPLD+LAD+ P K + RLLAKYGSL+SVIS++V F+YLVATP
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVRLLAKYGSLVSVISMVVCFIYLVATP 180
Query: 181 SKSGAKGSKKKR 192
+ +K S KK+
Sbjct: 181 KSNVSKASSKKK 192
>gb|AAM62841.1| unknown [Arabidopsis thaliana] gi|22136544|gb|AAM91058.1|
AT5g14030/MUA22_2 [Arabidopsis thaliana]
gi|18417271|ref|NP_568293.1| translocon-associated
protein beta (TRAPB) family protein [Arabidopsis
thaliana] gi|14517446|gb|AAK62613.1| AT5g14030/MUA22_2
[Arabidopsis thaliana]
Length = 195
Score = 241 bits (616), Expect = 6e-63
Identities = 118/194 (60%), Positives = 155/194 (79%), Gaps = 2/194 (1%)
Query: 1 MADPISKPLIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGT 60
MA ++K LI+ + + + S A+S+VPF+V HKKA+LNRLK+GAERVSV+ DIYNQG+
Sbjct: 1 MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60
Query: 61 STAYDVSLSDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIK 120
S+AYDV+L+D+SW F V++G TSK+WE+LDAGG+LSH+ ELEAK KGVF G PA++
Sbjct: 61 SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120
Query: 121 FRVPTSAALQEAYSTPILPLDVLADRAPEKKFE--WRLLAKYGSLISVISIIVMFVYLVA 178
FR+PT ALQEAYSTP+LPLD+LAD+ P K + RLLAKYGSL+SVIS++V F+YLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180
Query: 179 TPSKSGAKGSKKKR 192
TP + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194
>ref|NP_908342.1| P0672D08.29 [Oryza sativa (japonica cultivar-group)]
gi|20804445|dbj|BAB92142.1| contains ESTs
AU069042(C51821),D23969(R0687),AU031707(R0687)~similar
to Oryza sativa chromosome 5, AAG03105.1~unknown protein
[Oryza sativa (japonica cultivar-group)]
gi|15128456|dbj|BAB62640.1| contains ESTs
AU069042(C51821),D23969(R0687),AU031707(R0687)~similar
to Oryza sativa chromosome 5, AAG03105.1~unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 188
Score = 229 bits (584), Expect = 3e-59
Identities = 112/189 (59%), Positives = 150/189 (79%), Gaps = 4/189 (2%)
Query: 5 ISKPLIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAY 64
+++ ++ LL+A+ + AS+D PF+VAHKK SL+R K G ER++V++D+YNQG++TAY
Sbjct: 3 MARSILLLLLLAA---AASASADAPFLVAHKKVSLSRPKPGVERLAVSLDLYNQGSATAY 59
Query: 65 DVSLSDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVP 124
DVS++DD+W + F ++SG SKT E+LD G SH F LE K +G F G PA+I +RVP
Sbjct: 60 DVSINDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVP 119
Query: 125 TSAALQEAYSTPILPLDVLADRAPEKKFEWRLLAKYGSLISVISIIVMFVYLVATPSK-S 183
T AALQEAYSTPIL LDVLA+R PEKKFEWRL+AKYGSL+SV+ ++ +F+YLVA+PSK S
Sbjct: 120 TKAALQEAYSTPILALDVLAERPPEKKFEWRLVAKYGSLVSVVGLVGVFIYLVASPSKSS 179
Query: 184 GAKGSKKKR 192
GAK SKK+R
Sbjct: 180 GAKASKKRR 188
>ref|XP_549819.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|52076608|dbj|BAD45510.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 190
Score = 224 bits (571), Expect = 1e-57
Identities = 112/191 (58%), Positives = 150/191 (77%), Gaps = 6/191 (3%)
Query: 5 ISKPLIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAY 64
+++ ++ LL+A+ + AS+D PF+VAHKK SL+R K G ER++V++D+YNQG++TAY
Sbjct: 3 MARSILLLLLLAA---AASASADAPFLVAHKKVSLSRPKPGVERLAVSLDLYNQGSATAY 59
Query: 65 DVSLSDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVP 124
DVS++DD+W + F ++SG SKT E+LD G SH F LE K +G F G PA+I +RVP
Sbjct: 60 DVSINDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVP 119
Query: 125 TSAALQEAYSTPILPLDVLADRAPEKKFEW--RLLAKYGSLISVISIIVMFVYLVATPSK 182
T AALQEAYSTPIL LDVLA+R PEKKFEW RL+AKYGSL+SV+ ++ +F+YLVA+PSK
Sbjct: 120 TKAALQEAYSTPILALDVLAERPPEKKFEWVKRLVAKYGSLVSVVGLVGVFIYLVASPSK 179
Query: 183 -SGAKGSKKKR 192
SGAK SKK+R
Sbjct: 180 SSGAKASKKRR 190
>ref|XP_493875.1| rice EST BE041002 corresponds to a region of the predicated gene;
unknown protein [Oryza sativa]
Length = 192
Score = 219 bits (557), Expect = 4e-56
Identities = 109/187 (58%), Positives = 141/187 (75%), Gaps = 1/187 (0%)
Query: 7 KPLIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDV 66
+ L+ LL+ + A D PF+VA KK +L+R G ER++VT+++YNQG++TAYDV
Sbjct: 6 RSLLFLLLLLLVPFAAAAGQDAPFVVAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDV 65
Query: 67 SLSDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVPTS 126
SL+DDSW + F +ISGTTSK EKLD G SH F LE K +G F G PAII +RVPT
Sbjct: 66 SLNDDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITYRVPTK 125
Query: 127 AALQEAYSTPILPLDVLADRAPEKKFEWRLLAKYGSLISVISIIVMFVYLVATPSKS-GA 185
AALQEAYSTP+ PLD+LA+R P++KFE RL+ KYGSL+SV+S + +F+YLVA+PSKS A
Sbjct: 126 AALQEAYSTPMFPLDILAERPPQQKFELRLVGKYGSLVSVVSFVGVFIYLVASPSKSTAA 185
Query: 186 KGSKKKR 192
KGSKK+R
Sbjct: 186 KGSKKRR 192
>ref|NP_001003269.1| signal sequence receptor beta subunit [Canis familiaris]
gi|108075|pir||A36679 signal sequence receptor beta
chain precursor - dog gi|846|emb|CAA37661.1|
glycoprotein 25H [Canis familiaris]
gi|937|emb|CAA37609.1| signal sequence receptor beta
subunit [Canis familiaris]
gi|134931|sp|P23438|SSRB_CANFA Translocon-associated
protein, beta subunit precursor (TRAP-beta) (Signal
sequence receptor beta subunit) (SSR-beta) (GP25H)
gi|227468|prf||1704250A signal sequence receptor beta
Length = 183
Score = 63.5 bits (153), Expect = 3e-09
Identities = 49/184 (26%), Positives = 89/184 (47%), Gaps = 6/184 (3%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L+A +L+A F + SHA + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 3 LLASVLLALFAV-SHAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAA 128
SDDS+ + F ++SG + W+++ +SHT L G F A + +
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGP 119
Query: 129 LQEAYSTPILPLDVLADRAPEKKFEWRLL--AKYGSLISVISIIVMFVYLVATPSKSGAK 186
+ +++ +LA R +++F L A +G ++++ SI + + ++ K
Sbjct: 120 VVIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFG-VMTLPSIGIPLLLWYSSKRKYDTP 178
Query: 187 GSKK 190
SKK
Sbjct: 179 KSKK 182
>ref|NP_001006561.1| similar to glycoprotein 25H [Gallus gallus]
gi|53128131|emb|CAG31274.1| hypothetical protein [Gallus
gallus]
Length = 183
Score = 60.1 bits (144), Expect = 3e-08
Identities = 37/140 (26%), Positives = 68/140 (48%)
Query: 13 LLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDS 72
+++A+F L A + + K+ LNR + +++ +IYN G+S A DV LSDDS
Sbjct: 4 VILAAFALFYVARCEEGARLLASKSLLNRYAVEGKDLTLQYNIYNVGSSAALDVELSDDS 63
Query: 73 WTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAALQEA 132
+ + F ++SG + W+++ +SHT L G F A I + +
Sbjct: 64 FPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEGGQVVVG 123
Query: 133 YSTPILPLDVLADRAPEKKF 152
+++ +LA R +++F
Sbjct: 124 FTSAPGQGGILAQREFDRRF 143
>ref|NP_001015533.1| signal sequence receptor, beta (translocon-associated protein beta)
[Bos taurus] gi|59858317|gb|AAX08993.1| signal sequence
receptor, beta precursor [Bos taurus]
Length = 183
Score = 59.7 bits (143), Expect = 4e-08
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 6/184 (3%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L+AF ++A F + + A + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 3 LLAFAVLALFAV-TQAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAA 128
SDDS+ + F ++SG + W+++ +SHT L G F A + +
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGP 119
Query: 129 LQEAYSTPILPLDVLADRAPEKKFEWRLL--AKYGSLISVISIIVMFVYLVATPSKSGAK 186
+ +++ +LA R +++F L A +G ++++ SI V + ++ K
Sbjct: 120 VVIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFG-VMTLPSIGVPLLLWYSSKRKYDTP 178
Query: 187 GSKK 190
+KK
Sbjct: 179 KTKK 182
>gb|AAH74550.1| MGC69435 protein [Xenopus tropicalis]
gi|52345504|ref|NP_001004800.1| MGC69435 protein
[Xenopus tropicalis]
Length = 183
Score = 59.7 bits (143), Expect = 4e-08
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 36 KASLNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDSWTSDLFSVISGTTSKTWEKLDAG 95
K+ LNR + +++ +IYN G+S A +V LSDDS+ + F ++SG S W+++
Sbjct: 27 KSLLNRYAVEGKDLTLQYNIYNVGSSAALEVELSDDSFPPEDFGIVSGMLSVKWDRIAPA 86
Query: 96 GVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAALQEAYSTPILPLDVLADRAPEKKF 152
+SHT L G F A I + + Y++ +LA R +++F
Sbjct: 87 SNVSHTVVLRPLKAGYFNFTSATISYLAQEGGQVVVGYTSAPGQGGILAQREFDRRF 143
>gb|AAH75915.1| Signal sequence receptor, beta [Danio rerio]
gi|58801260|ref|NP_001001399.1| signal sequence
receptor, beta [Danio rerio]
Length = 184
Score = 59.7 bits (143), Expect = 4e-08
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 36 KASLNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDSWTSDLFSVISGTTSKTWEKLDAG 95
K+ LNR +++ IYN GTS A +V LSDDS+ + F ++SG + W+++
Sbjct: 28 KSLLNRYAVEGRDLTLQYSIYNVGTSAALEVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 87
Query: 96 GVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAALQEAYSTPILPLDVLADRAPEKKFEWR 155
+SHT L G F A + + + Y++ +LA R +++F
Sbjct: 88 SNVSHTVVLRPLKAGYFNFTSASVSYLAQEGGQVVVGYTSAPGQGGILAQREFDRRFSPH 147
Query: 156 LL--AKYGSLISVISIIVMFVYLVATPSKSGAKGSKK 190
L A +G ++++ SI + + ++ K + SKK
Sbjct: 148 YLDWAAFG-VMTLPSIGIPLLLWYSSKRKYDSPKSKK 183
>gb|AAK61351.1| translocon-associated protein beta [Danio rerio]
Length = 183
Score = 59.7 bits (143), Expect = 4e-08
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 36 KASLNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDSWTSDLFSVISGTTSKTWEKLDAG 95
K+ LNR +++ IYN GTS A +V LSDDS+ + F ++SG + W+++
Sbjct: 27 KSLLNRYAVEGRDLTLQYSIYNVGTSAALEVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86
Query: 96 GVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAALQEAYSTPILPLDVLADRAPEKKFEWR 155
+SHT L G F A + + + Y++ +LA R +++F
Sbjct: 87 SNVSHTVVLRPLKAGYFNFTSASVSYLAQEGGQVVVGYTSAPGQGGILAQREFDRRFSPH 146
Query: 156 LL--AKYGSLISVISIIVMFVYLVATPSKSGAKGSKK 190
L A +G ++++ SI + + ++ K + SKK
Sbjct: 147 YLDWAAFG-VMTLPSIGIPLLLWYSSKRKYDSPKSKK 182
>emb|CAF90806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 149
Score = 59.7 bits (143), Expect = 4e-08
Identities = 41/148 (27%), Positives = 74/148 (49%), Gaps = 3/148 (2%)
Query: 5 ISKPLIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAY 64
+SK + F+L+A LL A+ + ++A K+ LNR +++ +IYN G+S A
Sbjct: 1 MSKDVHVFVLLA--LLGLSAAEEGARLLA-SKSLLNRYAVEGRDLTLQYNIYNVGSSAAL 57
Query: 65 DVSLSDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVP 124
+V LSDDS+ + F ++SG + WE++ +SHT L G F A + +
Sbjct: 58 EVELSDDSFPPEDFGIVSGMLNVKWERIAPASNVSHTVVLRPLKAGYFNFTSASVSYVAQ 117
Query: 125 TSAALQEAYSTPILPLDVLADRAPEKKF 152
+ +++ +LA R +++F
Sbjct: 118 EGGEVVVGFTSAPGQGGILAQREFDRRF 145
>gb|AAH46938.1| MGC53499 protein [Xenopus laevis] gi|13194764|gb|AAK15544.1| signal
sequence receptor beta subunit [Xenopus laevis]
Length = 183
Score = 59.3 bits (142), Expect = 6e-08
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 36 KASLNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDSWTSDLFSVISGTTSKTWEKLDAG 95
K+ LNR + +++ +IYN G+S A +V LSDDS+ + F ++SG S W+++
Sbjct: 27 KSLLNRFAVEGKDLTLQYNIYNVGSSAALEVELSDDSFPPEDFGIVSGMLSVKWDRIAPA 86
Query: 96 GVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAALQEAYSTPILPLDVLADRAPEKKF 152
+SHT L G F A + + + Y++ +LA R +++F
Sbjct: 87 SNVSHTVVLRPLKAGYFNFTSATVAYLAQEGGEVVVGYTSAPGQGGILAQREFDRRF 143
>emb|CAH89317.1| TRAP beta protein [Gallus gallus]
Length = 183
Score = 57.8 bits (138), Expect = 2e-07
Identities = 36/140 (25%), Positives = 67/140 (47%)
Query: 13 LLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDS 72
+++A+F L A + + K+ LNR + +++ +IYN G+S A DV LSDDS
Sbjct: 4 VILAAFALFYVARCEEGARLLASKSLLNRYAVEGKDLTLQYNIYNVGSSAALDVELSDDS 63
Query: 73 WTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAALQEA 132
+ + F ++SG + W+++ +SHT L F A I + +
Sbjct: 64 FPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAAYFNFTSATITYLAQEGGQVVVG 123
Query: 133 YSTPILPLDVLADRAPEKKF 152
+++ +LA R +++F
Sbjct: 124 FTSAPGQGGILAQREFDRRF 143
>gb|AAH00341.1| SSR2 protein [Homo sapiens]
Length = 186
Score = 57.4 bits (137), Expect = 2e-07
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L++F+++A F + + A + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 6 LLSFVVLALFAV-TQAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 62
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKF 121
SDDS+ + F ++SG + W+++ +SHT L G F A I +
Sbjct: 63 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 115
>sp|P43308|SSRB_HUMAN Translocon-associated protein beta subunit precursor (TRAP-beta)
(Signal sequence receptor beta subunit) (SSR-beta)
gi|37955221|gb|AAP20059.1| HSD25 [Homo sapiens]
gi|4507239|ref|NP_003136.1| signal sequence receptor,
beta precursor [Homo sapiens] gi|452757|emb|CAA52207.1|
translocon-associated protein [Homo sapiens]
gi|48146063|emb|CAG33254.1| SSR2 [Homo sapiens]
gi|1736880|dbj|BAA07206.1| beta-signal sequence receptor
[Homo sapiens]
Length = 183
Score = 57.4 bits (137), Expect = 2e-07
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L++F+++A F + + A + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 3 LLSFVVLALFAV-TQAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKF 121
SDDS+ + F ++SG + W+++ +SHT L G F A I +
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112
>emb|CAH72632.1| signal sequence receptor, beta (translocon-associated protein beta)
[Homo sapiens]
Length = 146
Score = 57.4 bits (137), Expect = 2e-07
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L++F+++A F + + A + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 22 LLSFVVLALFAV-TQAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 78
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKF 121
SDDS+ + F ++SG + W+++ +SHT L G F A I +
Sbjct: 79 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 131
>emb|CAH72631.1| signal sequence receptor, beta (translocon-associated protein beta)
[Homo sapiens]
Length = 202
Score = 57.4 bits (137), Expect = 2e-07
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L++F+++A F + + A + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 22 LLSFVVLALFAV-TQAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 78
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKF 121
SDDS+ + F ++SG + W+++ +SHT L G F A I +
Sbjct: 79 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 131
>ref|XP_513870.1| PREDICTED: hypothetical protein XP_513870 [Pan troglodytes]
Length = 163
Score = 57.4 bits (137), Expect = 2e-07
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L++F+++A F + + A + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 6 LLSFVVLALFAV-TQAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 62
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKF 121
SDDS+ + F ++SG + W+++ +SHT L G F A I +
Sbjct: 63 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 115
>emb|CAE46211.1| hypothetical protein [Homo sapiens]
Length = 143
Score = 57.4 bits (137), Expect = 2e-07
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L++F+++A F + + A + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 24 LLSFVVLALFAV-TQAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 80
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKF 121
SDDS+ + F ++SG + W+++ +SHT L G F A I +
Sbjct: 81 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 133
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 308,847,085
Number of Sequences: 2540612
Number of extensions: 11709981
Number of successful extensions: 31697
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 31634
Number of HSP's gapped (non-prelim): 72
length of query: 192
length of database: 863,360,394
effective HSP length: 121
effective length of query: 71
effective length of database: 555,946,342
effective search space: 39472190282
effective search space used: 39472190282
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)
Medicago: description of AC133780.7