BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133571.7 + phase: 0
(79 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D84644 hypothetical protein At2g25110 [imported] - Arabidop... 129 3e-29
gb|AAN28761.1| At2g25110/F13D4.70 [Arabidopsis thaliana] gi|1620... 129 3e-29
gb|AAM65625.1| unknown [Arabidopsis thaliana] 124 8e-28
ref|XP_482616.1| putative stromal cell-derived factor 2 precurso... 116 2e-25
ref|XP_481233.1| Stromal cell-derived factor 2-like protein [Ory... 115 3e-25
dbj|BAD94595.1| hypothetical protein [Arabidopsis thaliana] 112 2e-24
gb|AAP05882.1| similar to GenBank Accession Number AE003603 CG11... 55 6e-07
ref|XP_321335.2| ENSANGP00000013320 [Anopheles gambiae str. PEST... 50 1e-05
gb|AAM50667.1| GH21273p [Drosophila melanogaster] gi|7296765|gb|... 47 2e-04
dbj|BAB18278.1| SDF2 like protein 1 [Mus musculus] 47 2e-04
ref|XP_425406.1| PREDICTED: similar to Stromal cell-derived fact... 46 2e-04
ref|NP_071719.1| stromal cell-derived factor 2-like 1 [Mus muscu... 46 3e-04
gb|EAL28544.1| GA11321-PA [Drosophila pseudoobscura] 46 3e-04
emb|CAE66741.1| Hypothetical protein CBG12091 [Caenorhabditis br... 45 4e-04
dbj|BAB18277.1| SDF2 like protein 1 [Homo sapiens] 45 4e-04
dbj|BAA09313.1| SDF2 [Mus musculus] 45 5e-04
ref|XP_638372.1| hypothetical protein DDB0186222 [Dictyostelium ... 45 6e-04
gb|AAH87463.1| LOC496057 protein [Xenopus laevis] 44 8e-04
gb|AAP35590.1| dihydropyrimidinase-like 2 [Homo sapiens] gi|6136... 44 0.001
ref|NP_033169.2| stromal cell derived factor 2 [Mus musculus] gi... 44 0.001
>pir||D84644 hypothetical protein At2g25110 [imported] - Arabidopsis thaliana
Length = 173
Score = 129 bits (323), Expect = 3e-29
Identities = 57/68 (83%), Positives = 63/68 (91%)
Query: 10 EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
EGSGKTWKQDQR RLQHIDTSGY +SHDKKY RIAGGQQEVCG+REK+ADN+WLAAEGVY
Sbjct: 106 EGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVY 165
Query: 70 LPVTESKQ 77
LP+ ES +
Sbjct: 166 LPLNESSK 173
>gb|AAN28761.1| At2g25110/F13D4.70 [Arabidopsis thaliana]
gi|16209645|gb|AAL14383.1| At2g25110/F13D4.70
[Arabidopsis thaliana] gi|18400721|ref|NP_565585.1| MIR
domain-containing protein [Arabidopsis thaliana]
gi|24212393|sp|Q93ZE8|SDF2_ARATH Stromal cell-derived
factor 2-like protein precursor (SDF2-like protein)
Length = 218
Score = 129 bits (323), Expect = 3e-29
Identities = 57/68 (83%), Positives = 63/68 (91%)
Query: 10 EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
EGSGKTWKQDQR RLQHIDTSGY +SHDKKY RIAGGQQEVCG+REK+ADN+WLAAEGVY
Sbjct: 151 EGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVY 210
Query: 70 LPVTESKQ 77
LP+ ES +
Sbjct: 211 LPLNESSK 218
>gb|AAM65625.1| unknown [Arabidopsis thaliana]
Length = 218
Score = 124 bits (310), Expect = 8e-28
Identities = 56/68 (82%), Positives = 62/68 (90%)
Query: 10 EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
EGSGKTWKQDQR RLQHIDTSGY +SHDKKY RIAGGQQEVCG+REK+ADN+ LAAEGVY
Sbjct: 151 EGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNICLAAEGVY 210
Query: 70 LPVTESKQ 77
LP+ ES +
Sbjct: 211 LPLNESSK 218
>ref|XP_482616.1| putative stromal cell-derived factor 2 precursor [Oryza sativa
(japonica cultivar-group)] gi|42408689|dbj|BAD09908.1|
putative stromal cell-derived factor 2 precursor [Oryza
sativa (japonica cultivar-group)]
gi|42408674|dbj|BAD09894.1| putative stromal
cell-derived factor 2 precursor [Oryza sativa (japonica
cultivar-group)]
Length = 217
Score = 116 bits (290), Expect = 2e-25
Identities = 49/67 (73%), Positives = 59/67 (87%)
Query: 10 EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
EG GK WKQDQ+ RL+H+DT GY +SH+KKY+R+ GGQQEVCGVREKRA+N+WLA EGVY
Sbjct: 151 EGGGKLWKQDQKVRLRHVDTGGYLHSHNKKYNRLGGGQQEVCGVREKRAENIWLATEGVY 210
Query: 70 LPVTESK 76
LPV +SK
Sbjct: 211 LPVNKSK 217
>ref|XP_481233.1| Stromal cell-derived factor 2-like protein [Oryza sativa (japonica
cultivar-group)] gi|37806069|dbj|BAC99520.1| Stromal
cell-derived factor 2-like protein [Oryza sativa
(japonica cultivar-group)] gi|37805903|dbj|BAC99752.1|
Stromal cell-derived factor 2-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 217
Score = 115 bits (288), Expect = 3e-25
Identities = 49/67 (73%), Positives = 60/67 (89%)
Query: 10 EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
EGSGK+W+Q+Q+ RL+H+DT GY +SHD+KY+RIAGGQQEVCGV +KR DNVWLAAEGVY
Sbjct: 151 EGSGKSWRQNQKIRLRHVDTGGYLHSHDRKYTRIAGGQQEVCGVGDKRPDNVWLAAEGVY 210
Query: 70 LPVTESK 76
LPV + K
Sbjct: 211 LPVNQQK 217
>dbj|BAD94595.1| hypothetical protein [Arabidopsis thaliana]
Length = 61
Score = 112 bits (281), Expect = 2e-24
Identities = 50/61 (81%), Positives = 56/61 (90%)
Query: 17 KQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK 76
KQDQR RLQHIDTSGY +SHDKKY RIAGGQQEVCG+REK+ADN+WLAAEGVYLP+ ES
Sbjct: 1 KQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNESS 60
Query: 77 Q 77
+
Sbjct: 61 K 61
>gb|AAP05882.1| similar to GenBank Accession Number AE003603 CG11999 gene product
in Drosophila melanogaster [Schistosoma japonicum]
Length = 216
Score = 54.7 bits (130), Expect = 6e-07
Identities = 26/58 (44%), Positives = 31/58 (52%)
Query: 13 GKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYL 70
G WKQ RL+HI T GY + K+YSR GQ EV + W AAEGVY+
Sbjct: 140 GAYWKQSSNIRLKHISTEGYLHLSGKRYSRPISGQYEVSSTPKLTNAITWTAAEGVYI 197
>ref|XP_321335.2| ENSANGP00000013320 [Anopheles gambiae str. PEST]
gi|55233604|gb|EAA00948.2| ENSANGP00000013320 [Anopheles
gambiae str. PEST]
Length = 196
Score = 50.1 bits (118), Expect = 1e-05
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLP 71
SG +W + RLQHIDT Y + + R GQ EV G+ + W+AAEG+++
Sbjct: 123 SGDSWVRTNPVRLQHIDTDMYLGVSGRTFGRPINGQMEVIGLPNPYSGTEWIAAEGLFIH 182
Query: 72 VTE 74
TE
Sbjct: 183 PTE 185
>gb|AAM50667.1| GH21273p [Drosophila melanogaster] gi|7296765|gb|AAF52043.1|
CG11999-PA [Drosophila melanogaster]
gi|24644197|ref|NP_649527.1| CG11999-PA [Drosophila
melanogaster]
Length = 216
Score = 46.6 bits (109), Expect = 2e-04
Identities = 20/59 (33%), Positives = 30/59 (49%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYL 70
S + W + RL+HIDT Y + Y R GQ E+ GV + + W AEG+++
Sbjct: 141 SNENWMRSAHVRLRHIDTGMYLGMSGRSYGRPISGQMEIVGVHKPQHGTRWTTAEGLFI 199
>dbj|BAB18278.1| SDF2 like protein 1 [Mus musculus]
Length = 221
Score = 46.6 bits (109), Expect = 2e-04
Identities = 20/59 (33%), Positives = 32/59 (53%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYL 70
SG+ W+++ R QH+ TS + ++Y GQ EV G+ A N W A EG+++
Sbjct: 150 SGQXWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHNTWKAMEGIFI 208
>ref|XP_425406.1| PREDICTED: similar to Stromal cell-derived factor 2 precursor
(SDF-2) [Gallus gallus]
Length = 192
Score = 46.2 bits (108), Expect = 2e-04
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLP 71
SG W +D R QH T + ++Y R GQ+EV G+ +N W EG+++
Sbjct: 119 SGTYWARDSEVRFQHASTDVFLSVTGEQYGRPINGQREVHGMATSSQNNYWKVMEGIFMQ 178
Query: 72 VTESKQAE 79
E +AE
Sbjct: 179 PGEMFKAE 186
>ref|NP_071719.1| stromal cell-derived factor 2-like 1 [Mus musculus]
gi|31419686|gb|AAH53438.1| Stromal cell-derived factor
2-like 1 [Mus musculus] gi|31418258|gb|AAH53425.1|
Stromal cell-derived factor 2-like 1 [Mus musculus]
gi|21542246|sp|Q9ESP1|SDF2L_MOUSE Stromal cell-derived
factor 2-like protein 1 precursor (SDF2 like protein 1)
gi|11275387|dbj|BAB18276.1| SDF2 like protein 1 [Mus
musculus]
Length = 221
Score = 45.8 bits (107), Expect = 3e-04
Identities = 20/59 (33%), Positives = 32/59 (53%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYL 70
SG+ W+++ R QH+ TS + ++Y GQ EV G+ A N W A EG+++
Sbjct: 150 SGQHWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHNTWKAMEGIFI 208
>gb|EAL28544.1| GA11321-PA [Drosophila pseudoobscura]
Length = 216
Score = 45.8 bits (107), Expect = 3e-04
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 16 WKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYL 70
W +D RL+HIDT Y + Y R GQ E+ G+ + W AEG+++
Sbjct: 145 WMRDAHIRLRHIDTGMYLGMSGRSYGRPISGQMEIVGLHRPQHGTRWTTAEGLFI 199
>emb|CAE66741.1| Hypothetical protein CBG12091 [Caenorhabditis briggsae]
Length = 206
Score = 45.4 bits (106), Expect = 4e-04
Identities = 18/59 (30%), Positives = 32/59 (53%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYL 70
+G W + ++F+L+H+ T Y +++ R GQ+EV G + W AEG+Y+
Sbjct: 141 NGDEWLESEQFKLRHVVTGSYLSLSGQQFGRPIHGQREVVGTDSITGGSAWKVAEGIYI 199
>dbj|BAB18277.1| SDF2 like protein 1 [Homo sapiens]
Length = 221
Score = 45.4 bits (106), Expect = 4e-04
Identities = 20/59 (33%), Positives = 32/59 (53%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYL 70
SG+ W+++ RLQH+ TS + ++Y GQ EV G+ N W A EG+++
Sbjct: 150 SGQHWEREAAVRLQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHNTWKAMEGIFI 208
>dbj|BAA09313.1| SDF2 [Mus musculus]
Length = 211
Score = 45.1 bits (105), Expect = 5e-04
Identities = 22/67 (32%), Positives = 34/67 (49%)
Query: 13 GKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLPV 72
G W +D R +H T ++Y R GQQEV G+ + +N W A EG+++
Sbjct: 139 GPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQQEVHGMAQPSQNNYWKAMEGIFMKP 198
Query: 73 TESKQAE 79
+E +AE
Sbjct: 199 SELLRAE 205
>ref|XP_638372.1| hypothetical protein DDB0186222 [Dictyostelium discoideum]
gi|60466970|gb|EAL65013.1| hypothetical protein
DDB0186222 [Dictyostelium discoideum]
Length = 212
Score = 44.7 bits (104), Expect = 6e-04
Identities = 22/59 (37%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDK-KYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
SGK W + Q R +H DT Y + + KY GQ E+ G + K D W EG+Y
Sbjct: 150 SGKEWMRGQVVRFKHADTKTYLQAIESAKYQNPIPGQIEISGGKSKNEDTKWRTEEGIY 208
>gb|AAH87463.1| LOC496057 protein [Xenopus laevis]
Length = 218
Score = 44.3 bits (103), Expect = 8e-04
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 16 WKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYL 70
W+++ R +HI T+ Y ++Y GQ+EV G+ A N W A EGV+L
Sbjct: 150 WEREDTVRFKHIGTNVYLTITGEQYGHPIRGQREVHGITNPNAHNYWKAMEGVFL 204
>gb|AAP35590.1| dihydropyrimidinase-like 2 [Homo sapiens]
gi|61362298|gb|AAX42196.1| stromal cell-derived factor
2-like 1 [synthetic construct]
gi|61362292|gb|AAX42195.1| stromal cell-derived factor
2-like 1 [synthetic construct]
Length = 619
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYL 70
SG+ W+++ R QH+ TS + ++Y GQ EV G+ N W A EG+++
Sbjct: 548 SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHNTWKAMEGIFI 606
>ref|NP_033169.2| stromal cell derived factor 2 [Mus musculus]
gi|56206006|emb|CAI24322.1| stromal cell derived factor
2 [Mus musculus] gi|37590160|gb|AAH58798.1| Stromal cell
derived factor 2 [Mus musculus]
gi|21542244|sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived
factor 2 precursor (SDF-2)
Length = 211
Score = 43.9 bits (102), Expect = 0.001
Identities = 21/68 (30%), Positives = 35/68 (50%)
Query: 12 SGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLP 71
+G W +D R +H T ++Y R GQ+EV G+ + +N W A EG+++
Sbjct: 138 NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMK 197
Query: 72 VTESKQAE 79
+E +AE
Sbjct: 198 PSELLRAE 205
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.131 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,470,271
Number of Sequences: 2540612
Number of extensions: 5466456
Number of successful extensions: 6787
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6723
Number of HSP's gapped (non-prelim): 67
length of query: 79
length of database: 863,360,394
effective HSP length: 55
effective length of query: 24
effective length of database: 723,626,734
effective search space: 17367041616
effective search space used: 17367041616
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC133571.7