BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130807.9 + phase: 0 /pseudo
(311 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP52347.1| putative retroelement [Oryza sativa (japonica cul... 240 4e-62
gb|AAV43974.1| putative polyprotein [Oryza sativa (japonica cult... 240 4e-62
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 239 6e-62
gb|AAP52510.1| putative polyprotein [Oryza sativa (japonica cult... 239 8e-62
ref|XP_475471.1| putative polyprotein [Oryza sativa (japonica cu... 239 1e-61
ref|NP_908336.1| putative polyprotein [Oryza sativa (japonica cu... 239 1e-61
gb|AAP55099.1| putative polyprotein [Oryza sativa (japonica cult... 238 2e-61
gb|AAT94008.1| putative polyprotein [Oryza sativa (japonica cult... 238 2e-61
gb|AAX95471.1| Retrotransposon gag protein, putative [Oryza sati... 238 2e-61
gb|AAX95470.1| Retrotransposon gag protein, putative [Oryza sati... 238 2e-61
gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cul... 237 4e-61
gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cul... 237 4e-61
ref|XP_493959.1| Similar to Sorghum bicolor 22 kDa kafirin clust... 237 4e-61
gb|AAX95637.1| Reverse transcriptase (RNA-dependent DNA polymera... 236 5e-61
emb|CAD39354.2| OSJNBa0059H15.5 [Oryza sativa (japonica cultivar... 236 5e-61
ref|XP_475750.1| putative polyprotein [Oryza sativa (japonica cu... 236 5e-61
ref|XP_475728.1| putative polyprotein [Oryza sativa (japonica cu... 236 5e-61
ref|XP_474155.1| OSJNBa0060D06.14 [Oryza sativa (japonica cultiv... 236 5e-61
ref|NP_918216.1| putative Sorghum bicolor 22 kDa kafirin cluster... 236 5e-61
gb|AAP52183.1| putative polyprotein [Oryza sativa (japonica cult... 236 6e-61
>gb|AAP52347.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531516|ref|NP_920060.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671891|gb|AAM74253.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 240 bits (612), Expect = 4e-62
Identities = 122/319 (38%), Positives = 193/319 (60%), Gaps = 28/319 (8%)
Query: 4 IVCFNCNEEGHIGSQCKQPKR---APTTG---------RVFAMAGTQTENEDRLIRGTCY 51
++CFNC + GH +C +P+R APT RV +A + +N ++ GT
Sbjct: 180 VICFNCGDPGHYADKCPKPRRVKNAPTPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFP 239
Query: 52 INNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLS 111
+N+ P + D+GATH F++ S G+++ + ++V TP V ++ C +
Sbjct: 240 VNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGN-QVFSTQYCPSATIE 298
Query: 112 MFGHDFEMDLVCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQL 171
+ F L+ L +DVILGM+WL + I+C ++ V +S+ E+ + F+S+ +
Sbjct: 299 IEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGETVSFFVSSPKY 358
Query: 172 KQMERDGILMFSLMASLSIENQAMIDKL*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPR 231
G+++ NQ + ++ +V D+P+V P+++P MPPKR++EF IDLVP
Sbjct: 359 H-----GVIL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPG 403
Query: 232 TKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYR 291
T P+ PYRM+A+ELAE+K++++DLL+ ++RPS SPWGAPV V KKD + R+C+DYR
Sbjct: 404 TNPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYR 463
Query: 292 QLNKVTIKNRYPLPRIDDL 310
LN+VTIKN+YPLPRIDDL
Sbjct: 464 ALNEVTIKNKYPLPRIDDL 482
>gb|AAV43974.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1568
Score = 240 bits (612), Expect = 4e-62
Identities = 125/318 (39%), Positives = 191/318 (59%), Gaps = 28/318 (8%)
Query: 5 VCFNCNEEGHIGSQCKQPKR---APTTG---------RVFAMAGTQTENEDRLIRGTCYI 52
VCFNC + GH +C +P+R APT RV +A + +N ++ GT +
Sbjct: 480 VCFNCGDPGHYADKCPKPRRVKNAPTPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFPV 539
Query: 53 NNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSM 112
N+ P + D+GATH F++ S G+++ + ++V TP V ++ C + +
Sbjct: 540 NSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGN-QVFSTQYCPSVTIEI 598
Query: 113 FGHDFEMDLVCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLK 172
F L+ L +DVILGM+WL + I+C ++ V +S+ E+ + F+S+ +
Sbjct: 599 EEVPFPSSLILLECKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGETVSFFVSSPKYH 658
Query: 173 QMERDGILMFSLMASLSIENQAMIDKL*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRT 232
G+++ NQ + ++ +V D+P+V P+++P MPPKRE+EF IDLVP T
Sbjct: 659 -----GVIL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKREIEFRIDLVPGT 703
Query: 233 KPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQ 292
P PYRM+A+ELAE+KK+++DLL+ ++RPS SPWGAPV V KKD + R+C+DYR
Sbjct: 704 NPFHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYRA 763
Query: 293 LNKVTIKNRYPLPRIDDL 310
LN+VTIKN+YPLPRIDDL
Sbjct: 764 LNEVTIKNKYPLPRIDDL 781
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 239 bits (611), Expect = 6e-62
Identities = 122/319 (38%), Positives = 191/319 (59%), Gaps = 28/319 (8%)
Query: 4 IVCFNCNEEGHIGSQCKQPKR-----APTTGRVFA-------MAGTQTENEDRLIRGTCY 51
++CFNC + GH +C +P+R AP V A +A + +N ++ GT
Sbjct: 578 VICFNCGDPGHYADKCPKPRRVKNAPAPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFP 637
Query: 52 INNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLS 111
+N+ P + D+GATH F++ S G+++ + ++V TP V ++ C +
Sbjct: 638 VNSIPATVLFDSGATHSFLSKSFTSNHGMEVISLERPLLVNTPGN-QVFSTQYCPSATIE 696
Query: 112 MFGHDFEMDLVCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQL 171
+ F L+ L +DVILGM+WL + I+C ++ V +S+ E+ + F+S+ +
Sbjct: 697 IEEVPFPSSLILLESKDLDVILGMDWLSCHRGVIDCANRKVTLTSSNGETVSFFMSSPK- 755
Query: 172 KQMERDGILMFSLMASLSIENQAMIDKL*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPR 231
G+++ NQ + ++ +V D+P+V P+++P MPPKRE+EF IDLVP
Sbjct: 756 ----SHGVIL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKREIEFRIDLVPG 801
Query: 232 TKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYR 291
T P+ PYRM+A+EL E+K+++EDLL+ ++RPS SPWGAPV V KKD + R+C+DYR
Sbjct: 802 TNPIHKRPYRMAANELVEVKRQVEDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYR 861
Query: 292 QLNKVTIKNRYPLPRIDDL 310
LN+VTIKN+YPLPRIDDL
Sbjct: 862 ALNEVTIKNKYPLPRIDDL 880
>gb|AAP52510.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531842|ref|NP_920223.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22725995|gb|AAN04995.1| retrotransposon protein,
putative, Ty3-gypsy sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1413
Score = 239 bits (610), Expect = 8e-62
Identities = 132/316 (41%), Positives = 192/316 (59%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 329 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 388
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 389 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 447
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + T Q + GI
Sbjct: 448 ILLESKDLDVILGMDWLARHRGVIDCASRTIKLTNAKGE-----VVTSQSLVPRKPGI-- 500
Query: 182 FSLMASLSIENQAMIDKL*-------VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K+ +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 501 -SLNQAAGEEQEVAVEKITKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 559
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM A+ELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+CIDYR LN
Sbjct: 560 IHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCIDYRALN 619
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 620 EVTIKNKYPLPRIDDL 635
>ref|XP_475471.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50080316|gb|AAT69650.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1458
Score = 239 bits (609), Expect = 1e-61
Identities = 132/316 (41%), Positives = 192/316 (59%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 475
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + T Q + GI
Sbjct: 476 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSLVPRKPGI-- 528
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 529 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 587
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM ASELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 588 IHKRPYRMGASELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 647
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 648 EVTIKNKYPLPRIDDL 663
>ref|NP_908336.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|52353682|gb|AAU44248.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|52353613|gb|AAU44179.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20804440|dbj|BAB92137.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|15128451|dbj|BAB62635.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 239 bits (609), Expect = 1e-61
Identities = 132/316 (41%), Positives = 192/316 (59%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 475
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + T Q + GI
Sbjct: 476 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSLVPRKPGI-- 528
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 529 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 587
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM ASELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 588 IHKRPYRMGASELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 647
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 648 EVTIKNKYPLPRIDDL 663
>gb|AAP55099.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37537020|ref|NP_922812.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225016|gb|AAL86492.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 238 bits (607), Expect = 2e-61
Identities = 131/316 (41%), Positives = 192/316 (60%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 475
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + T Q + GI
Sbjct: 476 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSPVPRKPGI-- 528
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 529 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 587
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM A+ELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 588 IHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 647
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 648 EVTIKNKYPLPRIDDL 663
>gb|AAT94008.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|51038165|gb|AAT93968.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1500
Score = 238 bits (607), Expect = 2e-61
Identities = 131/316 (41%), Positives = 192/316 (60%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 333 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 392
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 393 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 451
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + T Q + GI
Sbjct: 452 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSPVPRKPGI-- 504
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 505 -SLNQAAGEEQEVAVEKTTKKLGDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 563
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM A+ELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 564 IHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 623
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 624 EVTIKNKYPLPRIDDL 639
>gb|AAX95471.1| Retrotransposon gag protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 1441
Score = 238 bits (606), Expect = 2e-61
Identities = 132/316 (41%), Positives = 192/316 (59%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 358 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 417
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 418 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 476
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + T Q + GI
Sbjct: 477 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSLVPRKPGI-- 529
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 530 -SLNQAGGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 588
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM ASELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 589 IHKRPYRMGASELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 648
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 649 EVTIKNKYPLPRIDDL 664
>gb|AAX95470.1| Retrotransposon gag protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 1441
Score = 238 bits (606), Expect = 2e-61
Identities = 132/316 (41%), Positives = 191/316 (59%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 358 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 417
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 418 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 476
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + T Q + GI
Sbjct: 477 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSLVPRKPGI-- 529
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 530 -SLNQVAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 588
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM ASELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 589 IHKRPYRMGASELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 648
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 649 EVTIKNKYPLPRIDDL 664
>gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531686|ref|NP_920145.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671935|gb|AAM74297.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 974
Score = 237 bits (604), Expect = 4e-61
Identities = 119/319 (37%), Positives = 189/319 (58%), Gaps = 28/319 (8%)
Query: 4 IVCFNCNEEGHIGSQCKQPKRAPTT------------GRVFAMAGTQTENEDRLIRGTCY 51
++CFNC + GH +C +P+R RV +A + +N ++ GT
Sbjct: 318 VICFNCGDPGHYADKCPKPRRVKNAPVPNNPNVPAPKARVNHVAAAEAQNAPDVVLGTFP 377
Query: 52 INNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLS 111
+N+ P + D+GATH F++ S G+++ + ++V TP V ++ C +
Sbjct: 378 VNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGN-QVFSTQYCPSVTIE 436
Query: 112 MFGHDFEMDLVCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQL 171
+ F L+ L +DVILGM+WL + I+C ++ V +++ E+ + F S+ +
Sbjct: 437 IEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETVSFFASSPK- 495
Query: 172 KQMERDGILMFSLMASLSIENQAMIDKL*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPR 231
G+++ NQ + ++ +V D+P+V P+++P MPPKR++EF IDLVP
Sbjct: 496 ----SHGVVL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPG 541
Query: 232 TKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYR 291
T P+ PYRM+A+ELAE+KK+++DLL+ ++RPS SPWGAPV V KKD + R+C+DYR
Sbjct: 542 TNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYR 601
Query: 292 QLNKVTIKNRYPLPRIDDL 310
LN+VTIKN+YPLPRIDDL
Sbjct: 602 ALNEVTIKNKYPLPRIDDL 620
>gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531590|ref|NP_920097.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881768|gb|AAM01169.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 237 bits (604), Expect = 4e-61
Identities = 118/319 (36%), Positives = 189/319 (58%), Gaps = 28/319 (8%)
Query: 4 IVCFNCNEEGHIGSQCKQPKRAPTT------------GRVFAMAGTQTENEDRLIRGTCY 51
++CFNC + GH +C +P+ RV +A + +N ++ GT
Sbjct: 286 VICFNCGDPGHYADKCPKPRHVKNVPVPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFP 345
Query: 52 INNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLS 111
+N+ P + D+GATH F++ + G+++ + ++V TP V ++ C +
Sbjct: 346 VNSIPATVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPGN-QVFSTRYCPSVTIE 404
Query: 112 MFGHDFEMDLVCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQL 171
+ G F L+ L +DVILGM+WL + I+C ++ V +++ E+ + F S+ +
Sbjct: 405 IEGVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETVSFFASSPK- 463
Query: 172 KQMERDGILMFSLMASLSIENQAMIDKL*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPR 231
G+++ NQ + ++ +V D+P+V P+++P MPPKR++EF IDLVP
Sbjct: 464 ----SHGVVL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPG 509
Query: 232 TKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYR 291
T P+ PYRM+A+ELAE+KK+++DLL+ ++RPS SPWGAPV V KKD + R+C+DYR
Sbjct: 510 TNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYR 569
Query: 292 QLNKVTIKNRYPLPRIDDL 310
LN+VTIKN+YPLPRIDDL
Sbjct: 570 ALNEVTIKNKYPLPRIDDL 588
>ref|XP_493959.1| Similar to Sorghum bicolor 22 kDa kafirin cluster; polyprotein.
(AF061282) [Oryza sativa (japonica cultivar-group)]
Length = 1524
Score = 237 bits (604), Expect = 4e-61
Identities = 130/316 (41%), Positives = 191/316 (60%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 475
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E T Q + G+
Sbjct: 476 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEE-----VTFQSLVPRKPGV-- 528
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 529 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 587
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM A+ELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 588 IHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 647
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 648 EVTIKNKYPLPRIDDL 663
>gb|AAX95637.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa (japonica cultivar-group)]
gi|50918021|ref|XP_469407.1| putative gag-pol
polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28273360|gb|AAO38446.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1229
Score = 236 bits (603), Expect = 5e-61
Identities = 130/316 (41%), Positives = 192/316 (60%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 62 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 121
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 122 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 180
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + Q ++ GI
Sbjct: 181 ILLESKDLDVILGMDWLARHRGVIDCASRTIKLTNAKGE-----VVIFQSPVPQKPGI-- 233
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 234 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 292
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM A+ELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 293 IHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 352
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 353 EVTIKNKYPLPRIDDL 368
>emb|CAD39354.2| OSJNBa0059H15.5 [Oryza sativa (japonica cultivar-group)]
gi|50921657|ref|XP_471189.1| OSJNBa0059H15.5 [Oryza
sativa (japonica cultivar-group)]
Length = 1466
Score = 236 bits (603), Expect = 5e-61
Identities = 131/316 (41%), Positives = 192/316 (60%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCNE GH +C +P+RA RV + + ++ +I GT +++TP +
Sbjct: 395 LCFNCNEPGHTVGRCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVDSTPAKILF 454
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 455 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGMIFPANL 513
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + T Q + + GI
Sbjct: 514 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSQVPRKLGI-- 566
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 567 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 625
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM ASELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 626 IHKRPYRMGASELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 685
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 686 EVTIKNKYPLPRIDDL 701
>ref|XP_475750.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48843822|gb|AAT47081.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 236 bits (603), Expect = 5e-61
Identities = 130/316 (41%), Positives = 192/316 (60%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGSIFPANL 475
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + T Q ++ I
Sbjct: 476 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSPVPQKPRI-- 528
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 529 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 587
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM A+ELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 588 IHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 647
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 648 EVTIKNKYPLPRIDDL 663
>ref|XP_475728.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50080333|gb|AAT69667.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 236 bits (603), Expect = 5e-61
Identities = 130/316 (41%), Positives = 192/316 (60%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 475
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + Q ++ GI
Sbjct: 476 ILLESKDLDVILGMDWLARHRGVIDCASRTIKLTNAKGE-----VVIFQSPVPQKPGI-- 528
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 529 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 587
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM A+ELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 588 IHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 647
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 648 EVTIKNKYPLPRIDDL 663
>ref|XP_474155.1| OSJNBa0060D06.14 [Oryza sativa (japonica cultivar-group)]
gi|38345904|emb|CAE03548.2| OSJNBa0060D06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1458
Score = 236 bits (603), Expect = 5e-61
Identities = 130/316 (41%), Positives = 192/316 (60%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 475
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + Q ++ GI
Sbjct: 476 ILLESKDLDVILGMDWLARHRGVIDCASRTIKLTNAKGE-----VVIFQSPVPQKPGI-- 528
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 529 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 587
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM A+ELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 588 IHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 647
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 648 EVTIKNKYPLPRIDDL 663
>ref|NP_918216.1| putative Sorghum bicolor 22 kDa kafirin cluster polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 236 bits (603), Expect = 5e-61
Identities = 130/316 (41%), Positives = 192/316 (60%), Gaps = 19/316 (6%)
Query: 5 VCFNCNEEGHIGSQCKQPKRAP---TTGRVFAMAGTQTENEDRLIRGTCYINNTPLVAII 61
+CFNCN+ GH +C +P+RA RV + + ++ +I GT +N+TP V +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 62 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDL 121
D+GATH FI+ A GL L + M V TP G +TT+ C + + G F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPANL 475
Query: 122 VCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQLKQMERDGILM 181
+ L +DVILGM+WL + I+C S+++ ++A+ E + Q ++ GI
Sbjct: 476 ILLESKDLDVILGMDWLARHRGVIDCASRTIKLTNAKGE-----VVIFQSPVPQKPGI-- 528
Query: 182 FSLMASLSIENQAMIDK-------L*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKP 234
SL + E + ++K + +V ++PEV PD++ MPPKR++EF IDLVP T P
Sbjct: 529 -SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAP 587
Query: 235 VSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLN 294
+ PYRM A+ELAE+KK++++ L+ ++RPS SPWGAPV V KKD + R+C+DYR LN
Sbjct: 588 IHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN 647
Query: 295 KVTIKNRYPLPRIDDL 310
+VTIKN+YPLPRIDDL
Sbjct: 648 EVTIKNKYPLPRIDDL 663
>gb|AAP52183.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531188|ref|NP_919896.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20177638|gb|AAM14693.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1630
Score = 236 bits (602), Expect = 6e-61
Identities = 122/319 (38%), Positives = 191/319 (59%), Gaps = 28/319 (8%)
Query: 4 IVCFNCNEEGHIGSQCKQPKR-----APTTGRVFA-------MAGTQTENEDRLIRGTCY 51
+VCFNC + GH +C +P+R AP V A +A + +N ++ GT
Sbjct: 543 VVCFNCGDPGHYADKCPKPRRVKNAPAPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFP 602
Query: 52 INNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLS 111
+N+ P + D+GATH F++ S G+++ + ++V TP V ++ C +
Sbjct: 603 VNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGN-QVFSTQYCPSVTIE 661
Query: 112 MFGHDFEMDLVCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSSAEEESGA*FLSTKQL 171
+ F L+ L +DVILGM+WL + I+C ++ V +S+ E+ + F+S+ +
Sbjct: 662 IEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGETVSFFVSSPK- 720
Query: 172 KQMERDGILMFSLMASLSIENQAMIDKL*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPR 231
G+++ NQ + ++ +V D+P+V P+++P MPPKR++EF IDLVP
Sbjct: 721 ----SHGVIL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPG 766
Query: 232 TKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYR 291
T P+ PYRM+A+ELAE+KK+++DLL+ ++RPS SPWGAPV V KKD + R+C+DYR
Sbjct: 767 TNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYR 826
Query: 292 QLNKVTIKNRYPLPRIDDL 310
L +VTIKN+YPLPRIDDL
Sbjct: 827 ALIEVTIKNKYPLPRIDDL 845
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.140 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,985,646
Number of Sequences: 2540612
Number of extensions: 21686075
Number of successful extensions: 113502
Number of sequences better than 10.0: 6370
Number of HSP's better than 10.0 without gapping: 4122
Number of HSP's successfully gapped in prelim test: 2248
Number of HSP's that attempted gapping in prelim test: 105777
Number of HSP's gapped (non-prelim): 7883
length of query: 311
length of database: 863,360,394
effective HSP length: 127
effective length of query: 184
effective length of database: 540,702,670
effective search space: 99489291280
effective search space used: 99489291280
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)
Medicago: description of AC130807.9