BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130807.5 + phase: 0 /pseudo
(1454 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD22153.1| polyprotein [Sorghum bicolor] 217 3e-54
gb|AAT73694.1| putative polyprotein [Oryza sativa (japonica cult... 214 2e-53
gb|AAP52849.1| putative retroelement [Oryza sativa (japonica cul... 213 5e-53
gb|AAP52683.1| putative polyprotein [Oryza sativa (japonica cult... 213 5e-53
gb|AAV31371.1| putative polyprotein [Oryza sativa (japonica cult... 211 1e-52
gb|AAV31366.1| putative polyprotein [Oryza sativa (japonica cult... 211 1e-52
gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cul... 209 7e-52
ref|XP_471161.1| OSJNBb0080H08.12 [Oryza sativa (japonica cultiv... 207 2e-51
gb|AAQ56471.1| putative polyprotein [Oryza sativa (japonica cult... 207 2e-51
emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa (japonica cultiva... 207 3e-51
ref|XP_476280.1| putative polyprotein [Oryza sativa (japonica cu... 206 5e-51
ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cu... 206 6e-51
gb|AAQ56531.1| putative polyprotein [Oryza sativa (japonica cult... 206 6e-51
emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar... 204 1e-50
gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cult... 204 2e-50
emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar... 204 2e-50
gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cult... 204 2e-50
emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa (japonica cultiva... 204 2e-50
gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cult... 203 3e-50
gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cult... 203 4e-50
>gb|AAD22153.1| polyprotein [Sorghum bicolor]
Length = 1484
Score = 217 bits (552), Expect = 3e-54
Identities = 149/569 (26%), Positives = 252/569 (44%), Gaps = 87/569 (15%)
Query: 13 LEAIAQAVEQQPQASNGEVRMLET---FLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQ 69
+ Q ++QQP + + + + F++ PP F DP A WL+ VER Q
Sbjct: 47 MHVFMQHLQQQPPPTPPPIHVRDKRGEFMKGRPPVFTHSADPMEADDWLRAVERQLNIAQ 106
Query: 70 CSEVKKVRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEI 129
C++++KV + + L A WW S + + VTW F R+F R+ E V K+
Sbjct: 107 CNDLEKVLYASGQLQGAAQTWWESYQAARPNNASPVTWLEFCRDFRARHINEGVMELKQE 166
Query: 130 EFLELK*GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIR 189
EF L+ G ++V EY F +LA++ P+ E A+ + F GL ++ +
Sbjct: 167 EFRSLRMGSMTVAEYHDTFEQLARYAPNDVREDADKQRL--FMKGLYYELRLQLAGNTYP 224
Query: 190 IFSDLVSRCRICEEDTKAHYK---VMSERRGK-----------------------GRQSR 223
F LV+R + + K+ K ++++ G R +
Sbjct: 225 TFQALVNRAIVLDNMRKSQDKKRRMLAQGSGSNNRQRFSSHQGHQQRFQGPVSQWNRNQQ 284
Query: 224 PKPYSAPADKGKQRLNDERRPNRRDASAEIVCFKCGEKGHKSNVCTK-----DEKKCFRC 278
P+ + + G QR ++R + + + + G+ + TK +CFRC
Sbjct: 285 PQRFQNQSQSGNQRPPFQQRNHNQQQHGQ----QAPRPGNPNANSTKRSASNTPTRCFRC 340
Query: 279 GQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDRTGGKVFALTGTQTTNEDRLIRGT 338
G++GH+ DC + Q + KV + ++ GT
Sbjct: 341 GKEGHMSYDCPE------------KFNPQYNDRRSTPNSAKVNNVAAETVQEGPEIMMGT 388
Query: 339 CFFNSTPLIAIIDTGATHCFIALESAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCP 398
NS P + D+GA+H FI+ L + M M+V +P G++ SL C
Sbjct: 389 FSINSIPATVLFDSGASHTFISQAFVRVHSLPLVAMNTPMLVNSPG-GTIPVSLRCPSAS 447
Query: 399 TSMFGRDFVVDLVCLPLTGMDVIFGMNWLEYNRVHINCFSKTMHFSSAEEE--------- 449
S+ G DF + + + +G+DVI G++W++ + +INC + + ++ + E
Sbjct: 448 LSLRGVDFPISPMVMRTSGIDVILGLDWMKQHATNINCKERVVVLTTPKGERISVDVTMQ 507
Query: 450 -------------------------EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYR 484
+VFPDE+P +PP+R++EF I+L+PGT P++ PYR
Sbjct: 508 APLAAKVNQLTDDVDPQNLVVDEFPDVFPDELPGMPPDRDIEFIIELLPGTAPIAKRPYR 567
Query: 485 MSSSELAELKKQLED*LDKKFVRPNVSPW 513
M EL ELKKQ+++ DK F+RP+ SPW
Sbjct: 568 MGVKELEELKKQIKELQDKGFIRPSSSPW 596
Score = 132 bits (333), Expect = 7e-29
Identities = 58/112 (51%), Positives = 83/112 (73%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ G +WD LP EF+YNN Y S+ MAPFEALYG++C
Sbjct: 1231 QTDGQTERINQILEDMLRACALQYGTSWDKSLPYAEFSYNNSYQQSLKMAPFEALYGRKC 1290
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GE V G ++++ ++V+ I++ ++V+ SRQKSY D RR++L
Sbjct: 1291 RTPLFWNQTGETQVFGTDVLRHAEQQVRTIRDNLRVAQSRQKSYADTRRREL 1342
>gb|AAT73694.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1778
Score = 214 bits (545), Expect = 2e-53
Identities = 149/521 (28%), Positives = 235/521 (44%), Gaps = 45/521 (8%)
Query: 34 LETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 361 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 419
Query: 94 LLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK*GDISVVEYAAKFVELAK 153
+ + +TW F F + V K+ EF ELK G+ SV+EY +F LA+
Sbjct: 420 HFQAAQPEGQPITWTRFTAAFRRTHVPAGVVALKKKEFRELKQGNRSVMEYLHEFNNLAR 479
Query: 154 FYPHYTAETAEFSKCIKFENGLRANIKRAI---GYQQIRIFSDLVSRCRICEEDTKAHYK 210
+ P E E K KF G+ + + Y + D R ++ ++H +
Sbjct: 480 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 537
Query: 211 VMSERRGKGRQSRPKPYSAPADKGK--QRLNDERRPNRRDASAEIVCFKCGEKGHKSNVC 268
++ R + ++ Y+ P G Q+ +++ R + V ++ ++
Sbjct: 538 RLANIRNQQGANQRVRYTNPYPGGSSSQQQQQQQQQPRSAPRPQFVVRVPQQQPQQNQQG 597
Query: 269 TKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPK--------------KD 314
T+ + GQ D +C+NC E GH + +C +P+ KD
Sbjct: 598 TRAPRPPTPAGQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKD 657
Query: 315 RTGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALESAYKLGLIVSDM 374
G+V +T +I GT +S P + D+GA+H FI++ K L V +
Sbjct: 658 VIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGKNQLGVERL 717
Query: 375 KGEMVVETPAKGSVTTSLVCLRCPTSMFGRDFVVDLVCLPLTGMDVIFGMNWLEYNRVHI 434
+ +++ TP G +T P + G F DL+ L +DVI GMNWL + +
Sbjct: 718 RNPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 776
Query: 435 NCFSKTM----------------------HFSSAEEEEVFPDEIPDVPPEREVEFSIDLV 472
+C +T+ E E+FP+E+P +PP+RE+EF IDL
Sbjct: 777 DCARRTVTLYRGPEQPVVFFAPPTSVRSSELHQIESSEIFPEELPGMPPKREIEFRIDLA 836
Query: 473 PGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPNVSPW 513
PGT P+ PYRM+++ELAE+KKQLE+ +K ++RP+ SPW
Sbjct: 837 PGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 877
Score = 141 bits (356), Expect = 1e-31
Identities = 65/113 (57%), Positives = 86/113 (75%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR CVL+ G TWD LP EF+YNN Y +SI MAP+EALYG++C
Sbjct: 1514 QTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKC 1573
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDLE 1454
RTPL W + GE V G +I+++ KV++I++ +KV+ SRQKSY D RR+DLE
Sbjct: 1574 RTPLLWDQVGESQVFGTDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLE 1626
>gb|AAP52849.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532520|ref|NP_920562.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|13992687|gb|AAK51581.1| Putative retroelement [Oryza
sativa]
Length = 959
Score = 213 bits (541), Expect = 5e-53
Identities = 149/529 (28%), Positives = 237/529 (44%), Gaps = 53/529 (10%)
Query: 34 LETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 327 LVEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 385
Query: 94 LLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK*GDISVVEYAAKFVELAK 153
+ + +TWA F F + V K+ EF ELK G+ SV+EY +F LA+
Sbjct: 386 HFQATQPEGQPITWARFTAAFRRTHVPAGVMALKKREFRELKQGNRSVMEYLHEFNNLAR 445
Query: 154 FYPHYTAETAEFSKCIKFENGLRANIKRAI---GYQQIRIFSDLVSRCRICEEDTKAHYK 210
+ P E E K KF G+ + + Y + D R +++ ++H +
Sbjct: 446 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKQKELESHKR 503
Query: 211 VMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVCFKCGE-KGHKSNVCT 269
++ R + ++ Y+ P G +++ R A + + + +S T
Sbjct: 504 RLASFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQLQQQQSQQGT 563
Query: 270 KDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPK--------------KDR 315
+ Q G + D + +C+NC E GH + +C +P+ KD
Sbjct: 564 RAPCPPTPAAQSGQVRRDVQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 623
Query: 316 TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALESAYKLGLIVSDMK 375
G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 624 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 683
Query: 376 GEMVVETPAKGSVTTSLVCLRCPTSMFGRDFVVDLVCLPLTGMDVIFGMNWLEYNRVHIN 435
+++ TP G +T P + G F DL+ L +DVI GMNWL + ++
Sbjct: 684 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 742
Query: 436 CFSKTMHFSSAEEE-------------------------------EVFPDEIPDVPPERE 464
C +T+ E+ +VFP+E+P +PP+RE
Sbjct: 743 CARRTVTLYRGPEQPVVFFAPPTSVSSSELHQIGLSEIPIFREFGDVFPEELPGMPPKRE 802
Query: 465 VEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPNVSPW 513
+EF IDL PGT P+ PYRM+++ELAE+KKQLE+ +K ++RP+ SPW
Sbjct: 803 IEFRIDLAPGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 851
>gb|AAP52683.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532188|ref|NP_920396.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20451036|gb|AAM22007.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1229
Score = 213 bits (541), Expect = 5e-53
Identities = 149/529 (28%), Positives = 236/529 (44%), Gaps = 53/529 (10%)
Query: 34 LETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 397 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 455
Query: 94 LLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK*GDISVVEYAAKFVELAK 153
+ + +TWA F F + V K+ EF ELK G+ SV+EY +F LA+
Sbjct: 456 HFQATQPEGQPITWARFTAAFRRTHVPVGVVSLKKREFRELKQGNRSVMEYLHEFNNLAR 515
Query: 154 FYPHYTAETAEFSKCIKFENGLRANIKRAI---GYQQIRIFSDLVSRCRICEEDTKAHYK 210
+ P E E K KF G+ + + Y + D R ++ ++H +
Sbjct: 516 YTPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 573
Query: 211 VMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVCFKCGEKGHKSN-VCT 269
++ R + ++ Y+ P G +++ R A + + + N T
Sbjct: 574 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 633
Query: 270 KDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPK--------------KDR 315
+ + Q G D + +C+NC E GH + +C +P+ KD
Sbjct: 634 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGAKDV 693
Query: 316 TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALESAYKLGLIVSDMK 375
G+V +T +I GT +S P + D+GA+H F+++ + L V ++
Sbjct: 694 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFVSVPFVGRNQLGVERLR 753
Query: 376 GEMVVETPAKGSVTTSLVCLRCPTSMFGRDFVVDLVCLPLTGMDVIFGMNWLEYNRVHIN 435
+++ TP G +T P + G F DL+ L +DVI GMNWL +V ++
Sbjct: 754 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQVVVD 812
Query: 436 CFSKTMHFSSAEEE-------------------------------EVFPDEIPDVPPERE 464
C +T+ E+ +VFP+E+P +PP+RE
Sbjct: 813 CARRTVTLYRGPEQPVVFFAPPTSVSSSELHQIGLSEIPIVREFGDVFPEELPGMPPKRE 872
Query: 465 VEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPNVSPW 513
+EF IDL PGT P+ PYRM+++ELAE+KKQLE+ +K ++RP+ SPW
Sbjct: 873 IEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 921
>gb|AAV31371.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1820
Score = 211 bits (538), Expect = 1e-52
Identities = 149/529 (28%), Positives = 235/529 (44%), Gaps = 53/529 (10%)
Query: 34 LETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 395 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 453
Query: 94 LLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK*GDISVVEYAAKFVELAK 153
+ + +TWA F F + V K+ EF ELK G+ SV+EY +F LA+
Sbjct: 454 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 513
Query: 154 FYPHYTAETAEFSKCIKFENGLRANIKRAI---GYQQIRIFSDLVSRCRICEEDTKAHYK 210
+ P E E K KF G+ + + Y + D + R ++ ++H +
Sbjct: 514 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKIIRLEAKHKELESHKR 571
Query: 211 VMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVCFKCGEKGHKSN-VCT 269
+ R + ++ Y+ P G +++ R A + + + N T
Sbjct: 572 RLVNFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 631
Query: 270 KDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPK--------------KDR 315
+ + Q G D + +C+NC E GH + +C +P+ KD
Sbjct: 632 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 691
Query: 316 TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALESAYKLGLIVSDMK 375
G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 692 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 751
Query: 376 GEMVVETPAKGSVTTSLVCLRCPTSMFGRDFVVDLVCLPLTGMDVIFGMNWLEYNRVHIN 435
+++ TP G +T P + G F DL+ L +DVI GMNWL + ++
Sbjct: 752 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 810
Query: 436 CFSKTMHFSSAEEE-------------------------------EVFPDEIPDVPPERE 464
C +T+ E+ +VFP+E+P +PP+RE
Sbjct: 811 CARRTVTLYRGPEQPVVFFAPPTSASSSELHQIGLSEIPIVREFGDVFPEELPGMPPKRE 870
Query: 465 VEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPNVSPW 513
+EF IDL PGT P+ PYRM+++ELAE+KKQLE+ +K ++RP+ SPW
Sbjct: 871 IEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 919
Score = 140 bits (352), Expect = 4e-31
Identities = 64/113 (56%), Positives = 86/113 (75%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR CVL+ G TWD LP EF+YNN Y +SI MAP+EALYG++C
Sbjct: 1556 QTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKC 1615
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDLE 1454
RTPL W + GE V G +I+++ KV++I++ +KV+ S+QKSY D RR+DLE
Sbjct: 1616 RTPLLWDQVGESQVFGTDILREAEAKVRIIRDNLKVAQSQQKSYADNRRRDLE 1668
>gb|AAV31366.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1826
Score = 211 bits (538), Expect = 1e-52
Identities = 150/529 (28%), Positives = 235/529 (44%), Gaps = 53/529 (10%)
Query: 34 LETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 424 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVVFAAHQLQGPASLWW-D 482
Query: 94 LLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK*GDISVVEYAAKFVELAK 153
+ + +TWA F F + V K+ EF ELK G+ SV+EY +F LA+
Sbjct: 483 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 542
Query: 154 FYPHYTAETAEFSKCIKFENGLRANIKRAI---GYQQIRIFSDLVSRCRICEEDTKAHYK 210
+ P E E K KF GL + + Y + D R ++ ++H +
Sbjct: 543 YAPEDVREDEE--KQEKFLAGLDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 600
Query: 211 VMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVCFKCGEKGHKSN-VCT 269
++ R + ++ Y+ P G +++ R A + + + N T
Sbjct: 601 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 660
Query: 270 KDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPK--------------KDR 315
+ + Q G D + +C+NC E GH + +C +P+ KD
Sbjct: 661 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 720
Query: 316 TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALESAYKLGLIVSDMK 375
G+V +T +I GT +S P + D+GA+H FI++ + L V ++
Sbjct: 721 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 780
Query: 376 GEMVVETPAKGSVTTSLVCLRCPTSMFGRDFVVDLVCLPLTGMDVIFGMNWLEYNRVHIN 435
+++ TP G +T P + G F DL+ L +DVI GMNWL + ++
Sbjct: 781 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 839
Query: 436 CFSKTMHFSSAEEE-------------------------------EVFPDEIPDVPPERE 464
C +T+ E+ +VFP+E+P +PP+RE
Sbjct: 840 CARRTVTLYRGPEQPVVFFAPPTSVSSSELHQIGLSEIPIVREFIDVFPEELPGMPPKRE 899
Query: 465 VEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPNVSPW 513
+EF IDL PGT P+ PYRM+++ELAE+KKQLE+ +K ++RP+ SPW
Sbjct: 900 IEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 948
Score = 141 bits (356), Expect = 1e-31
Identities = 65/113 (57%), Positives = 86/113 (75%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR CVL+ G TWD LP EF+YNN Y +SI MAP+EALYG++C
Sbjct: 1562 QTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKC 1621
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDLE 1454
RTPL W + GE V G +I+++ KV++I++ +KV+ SRQKSY D RR+DLE
Sbjct: 1622 RTPLLWDQVGESQVFGTDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLE 1674
>gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533104|ref|NP_920854.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22539088|gb|AAN01260.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1683
Score = 209 bits (531), Expect = 7e-52
Identities = 152/544 (27%), Positives = 246/544 (44%), Gaps = 61/544 (11%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 317 QFQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEK 376
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 377 VSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLS 435
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 436 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYPDFQKLV 493
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M +R K R + K K + L + P +S
Sbjct: 494 DKA-IRQEDK---YNCMEQR--KRRIAHFKAQQGSNQKPRLTLGPQSMPQGGSSSVVRPQ 547
Query: 256 FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDR 315
+ +N+ + + Q+ + VVC+NC + GH + +C +P++ +
Sbjct: 548 RQFFNNNVGNNIRNQAPRPVAAPAQQQPAKREQGNKPVVCFNCGDPGHYADKCPKPRRVK 607
Query: 316 ------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALES 363
+ +V + + + +I GT NS P + D+GATH F+++
Sbjct: 608 VVPAQNNSAVSASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSF 667
Query: 364 AYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLTGMDV 420
A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L +DV
Sbjct: 668 AGNHGMEVEDLRRPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESKDLDV 723
Query: 421 IFGMNWLEYNRVHINCFSK------------TMHFSSAEE-------------------E 449
I GM+WL ++ I+C ++ T+H S+E
Sbjct: 724 ILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESLRSRLNQITLEEIPIVREYP 783
Query: 450 EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPN 509
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K ++RP+
Sbjct: 784 DVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPS 843
Query: 510 VSPW 513
SPW
Sbjct: 844 SSPW 847
Score = 144 bits (363), Expect = 2e-32
Identities = 64/112 (57%), Positives = 88/112 (78%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+EALYG++C
Sbjct: 1419 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKC 1478
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1479 RTPLLWDQTGERQVFRTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1530
>ref|XP_471161.1| OSJNBb0080H08.12 [Oryza sativa (japonica cultivar-group)]
gi|38344420|emb|CAE02386.2| OSJNBb0080H08.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1666
Score = 207 bits (527), Expect = 2e-51
Identities = 152/544 (27%), Positives = 247/544 (44%), Gaps = 61/544 (11%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 296 QFQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEK 355
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 356 VSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLT 414
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 415 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYPDFQKLV 472
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M ++ K R ++ K K + L + P +S
Sbjct: 473 DKA-IRQEDK---YNRMEQK--KRRIAQFKTQQGNNQKPRLTLGPQSMPQGGSSSVVRPQ 526
Query: 256 FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDR 315
+ +N+ K + Q+ + VVC+NC + GH + +C +P++ +
Sbjct: 527 RQFFNNNAGNNIRNKAPRPVAAPVQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVK 586
Query: 316 ------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALES 363
+ +V + + + +I GT NS P + D+GATH F+++
Sbjct: 587 VVPAQSNSAVPVSKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSF 646
Query: 364 AYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLTGMDV 420
A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L +DV
Sbjct: 647 AGNHGMEVEDLRRPLMVSTPSNQALSLQ----RSPSVRIEIKGVPFLANLILLESKDLDV 702
Query: 421 IFGMNWLEYNRVHINCFSK------------TMHFSSAEE-------------------E 449
I GM+WL ++ I+C ++ T+H S+E
Sbjct: 703 ILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESLRSRLNQITLEEIPIVREYS 762
Query: 450 EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPN 509
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K ++RP+
Sbjct: 763 DVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPS 822
Query: 510 VSPW 513
SPW
Sbjct: 823 SSPW 826
Score = 149 bits (375), Expect = 9e-34
Identities = 67/120 (55%), Positives = 91/120 (75%)
Query: 1334 LKEVERIFRTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPF 1393
L +V TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+
Sbjct: 1394 LTKVAHFIPTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPY 1453
Query: 1394 EALYGQRCRTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
EALYG++CRTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1454 EALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1513
>gb|AAQ56471.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|34015262|gb|AAQ56454.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1735
Score = 207 bits (527), Expect = 2e-51
Identities = 154/544 (28%), Positives = 246/544 (44%), Gaps = 61/544 (11%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 304 QLQNQQNQGNNHAPPQNKLAEFLRVRPPIFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEK 363
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 364 VSFASHQLHGSASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSRVVSLKKKEFRSLT 422
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 423 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYPDFQKLV 480
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M +R K R + K K + L + P +S
Sbjct: 481 DKA-IRQEDK---YNCMEQR--KRRIAHFKAQQGSNQKPRFTLGPQSMPQGGSSSVVRPQ 534
Query: 256 FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDR 315
+ +N+ + + Q+ + VVC+NC + GH + +C +P++ +
Sbjct: 535 RQFFNNNAGNNIRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVK 594
Query: 316 ------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALES 363
+ +V + + + +I GT NS P + D+GATH F+++
Sbjct: 595 VVPAQSNSAVPASKARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSF 654
Query: 364 AYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLTGMDV 420
A G+ V D++ ++V TP+ +++ R P+ + G FV +L+ L +DV
Sbjct: 655 AGNHGMEVEDLRHPLMVSTPSNQALSLQ----RSPSVRIEIKGVPFVANLILLESKDLDV 710
Query: 421 IFGMNWLEYNRVHINCFSK------------TMHFSSAEE-------------------E 449
I GM+WL +R I+C ++ T+H S+E
Sbjct: 711 ILGMDWLARHRGVIDCANRKVTLTSNDGRVVTVHALSSESLRSRLNQITLEEIPIVREYP 770
Query: 450 EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPN 509
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K ++RP+
Sbjct: 771 DVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPS 830
Query: 510 VSPW 513
SPW
Sbjct: 831 SSPW 834
Score = 147 bits (371), Expect = 3e-33
Identities = 65/112 (58%), Positives = 89/112 (79%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+EALYG++C
Sbjct: 1471 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKC 1530
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1531 RTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1582
>emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa (japonica cultivar-group)]
Length = 1412
Score = 207 bits (526), Expect = 3e-51
Identities = 154/548 (28%), Positives = 252/548 (45%), Gaps = 69/548 (12%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 42 QFQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEK 101
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 102 VSFASHQLHGPASEWW-DHFRLNRITAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLT 160
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 161 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYPDFQKLV 218
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M +++ + Q + + + K RL +P + S+ +V
Sbjct: 219 DKA-IRQEDK---YNRMEQKKRRIAQFKTQQ----GNNQKPRLTLGPQPMPQGGSSSVVR 270
Query: 256 ----FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQP 311
F G+ N+ + + Q+ + VVC+NC + GH + +C +P
Sbjct: 271 PQRQFFNNNAGN--NIRNQAPRPVAAPAQQQPAKREQGNKPVVCFNCGDPGHYADKCPKP 328
Query: 312 KKDR------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFI 359
++ + + +V + + + +I GT NS P + D+GATH F+
Sbjct: 329 RRVKVVPVQNNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFL 388
Query: 360 ALESAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLT 416
++ A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L
Sbjct: 389 SMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESK 444
Query: 417 GMDVIFGMNWLEYNRVHINCFSK------------TMHFSSAEE---------------- 448
+DVI GM+WL ++ I+C +K T+H S+E
Sbjct: 445 DLDVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTVHALSSESLRSRLNQITLEEIPIV 504
Query: 449 ---EEVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKF 505
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K +
Sbjct: 505 REYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGY 564
Query: 506 VRPNVSPW 513
+RP+ SPW
Sbjct: 565 IRPSSSPW 572
Score = 149 bits (375), Expect = 9e-34
Identities = 67/120 (55%), Positives = 91/120 (75%)
Query: 1334 LKEVERIFRTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPF 1393
L +V TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+
Sbjct: 1140 LTKVAHFIPTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPY 1199
Query: 1394 EALYGQRCRTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
EALYG++CRTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1200 EALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1259
>ref|XP_476280.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46485886|gb|AAS98511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1678
Score = 206 bits (524), Expect = 5e-51
Identities = 155/548 (28%), Positives = 254/548 (46%), Gaps = 69/548 (12%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 247 QFQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEK 306
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 307 VSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLS 365
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 366 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYPDFQKLV 423
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M +++ + Q + + + K RL +P + S+ +V
Sbjct: 424 DKA-IRQEDK---YNRMEQKKRRIAQFKTQQ----GNNQKPRLTLGPQPMPQGGSSSVVR 475
Query: 256 ----FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQP 311
F G+ N+ + + Q+ + VVC+NC + GH + +C +P
Sbjct: 476 PQRQFFNNNAGN--NIRNQAPRPVAAPTQQQPAKREQGNKPVVCFNCGDPGHYADKCPKP 533
Query: 312 KKDR------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFI 359
++ + + +V + + + +I GT NS P + D+GATH F+
Sbjct: 534 RRVKVVPAQSNSTVSASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFL 593
Query: 360 ALESAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLT 416
++ A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L
Sbjct: 594 SMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESK 649
Query: 417 GMDVIFGMNWLEYNRVHINCFSK------------TMHFSSAE-----------EE---- 449
+DVI GM+WL ++ I+C ++ T+H S+E EE
Sbjct: 650 DLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSEFLRSRLNQITLEEIPIV 709
Query: 450 ----EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKF 505
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K +
Sbjct: 710 REYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHTRPYRMAANELAEVKRQVDDLLQKGY 769
Query: 506 VRPNVSPW 513
+RP+ SPW
Sbjct: 770 IRPSSSPW 777
Score = 146 bits (369), Expect = 4e-33
Identities = 65/112 (58%), Positives = 88/112 (78%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF YNN Y +S+ MAP+EALYG++C
Sbjct: 1414 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFLYNNSYQASLQMAPYEALYGRKC 1473
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1474 RTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1525
>ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 206 bits (523), Expect = 6e-51
Identities = 151/544 (27%), Positives = 247/544 (44%), Gaps = 61/544 (11%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 44 QFQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEK 103
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 104 VSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLT 162
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 163 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYPDFQKLV 220
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M ++ K R ++ K K + L + P +S
Sbjct: 221 DKA-IRQEDK---YNRMEQK--KRRIAQFKTQQGNNQKPRLTLGPQSMPQGCSSSVVRPQ 274
Query: 256 FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDR 315
+ +N+ + + Q+ + VVC+NC + GH + +C +P++ +
Sbjct: 275 RQFFNNNAGNNIRNQAPRPVAVPAQQQPAKREQGNKPVVCFNCGDPGHYADKCPKPRRVK 334
Query: 316 ------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALES 363
+ +V + + + +I GT NS P + D+GATH F+++
Sbjct: 335 VVPAQNNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSF 394
Query: 364 AYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLTGMDV 420
A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L +DV
Sbjct: 395 AGNHGMEVEDLRRPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESKDLDV 450
Query: 421 IFGMNWLEYNRVHINCFSK------------TMHFSSAEE-------------------E 449
I GM+WL ++ I+C ++ T+H S+E
Sbjct: 451 ILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESLRSRLNQITLEEIPIVREYP 510
Query: 450 EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPN 509
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K ++RP+
Sbjct: 511 DVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPS 570
Query: 510 VSPW 513
SPW
Sbjct: 571 SSPW 574
Score = 147 bits (371), Expect = 3e-33
Identities = 65/112 (58%), Positives = 89/112 (79%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+EALYG++C
Sbjct: 1211 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKC 1270
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1271 RTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1322
>gb|AAQ56531.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1289
Score = 206 bits (523), Expect = 6e-51
Identities = 153/544 (28%), Positives = 245/544 (44%), Gaps = 61/544 (11%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 42 QLQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEK 101
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 102 VSFASHQLHGSAFEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLT 160
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 161 QGSRSVTEYLHEFNRLARYAPEDVRNDEEHQE--KFLGGLNDELSYPLMVGDYPDFQKLV 218
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M +R K R + K K + L + P +S
Sbjct: 219 DKA-IRQEDK---YNCMEQR--KRRIAHFKAQQGSNQKPRFTLGPQSMPQGGSSSVVRPQ 272
Query: 256 FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDR 315
+ +N+ + + Q+ + VVC+NC + GH + +C +P++ +
Sbjct: 273 RQFFNNNAGNNIRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVK 332
Query: 316 ------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALES 363
+ +V + + + +I GT NS P + D+GATH F+++
Sbjct: 333 VVPAQSNSAVPASKARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSF 392
Query: 364 AYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLTGMDV 420
A G+ V D++ ++V TP +++ R P+ + G F+ +L+ L +DV
Sbjct: 393 AGNHGMEVEDLRHPLMVSTPRNQALSLQ----RSPSVRIEIKGVPFLANLILLESKDLDV 448
Query: 421 IFGMNWLEYNRVHINCFSK------------TMHFSSAEE-------------------E 449
I GM+WL +R I+C ++ T+H S+E
Sbjct: 449 ILGMDWLARHRGVIDCANRKVTLTSNDGRVVTVHALSSESLRSRLNQITLEEIPIVREYP 508
Query: 450 EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPN 509
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K ++RP+
Sbjct: 509 DVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPS 568
Query: 510 VSPW 513
SPW
Sbjct: 569 SSPW 572
Score = 144 bits (362), Expect = 3e-32
Identities = 65/120 (54%), Positives = 89/120 (74%)
Query: 1334 LKEVERIFRTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPF 1393
L +V TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+
Sbjct: 1055 LTKVAHFIPTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPY 1114
Query: 1394 EALYGQRCRTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
EALYG++CRTPL W ++GER V G +I+++ EKVK+IQE+++V+ S KSY D R +DL
Sbjct: 1115 EALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSHHKSYADNRCRDL 1174
>emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar-group)]
gi|50930145|ref|XP_474600.1| OSJNBb0115I21.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1779
Score = 204 bits (520), Expect = 1e-50
Identities = 151/544 (27%), Positives = 245/544 (44%), Gaps = 61/544 (11%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ K
Sbjct: 348 QFQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQDK 407
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 408 VSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLT 466
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 467 QGSRSVTEYLHEFNRLARYAPEDVRNDEECQE--KFLGGLNDELSYPLMVGDYPDFQKLV 524
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M ++ K R ++ K K + L + P +S
Sbjct: 525 DKA-IRQEDK---YNRMEQK--KRRIAQFKTQQGNNQKPRLTLGPQSVPQGGSSSVVRPQ 578
Query: 256 FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDR 315
+ +N+ + + Q+ + VVC+NC + GH + +C +P++ +
Sbjct: 579 RQFFNNNAGNNIRNQAPRPVAVPAQQQPAKREQGNKPVVCFNCGDPGHYADKCPKPRRVK 638
Query: 316 ------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALES 363
+ +V + + +I GT NS P + D+GATH F+++
Sbjct: 639 VVPAQNNSAVPASKARVNHVAAAEAQGAPDVILGTFLVNSVPATVLFDSGATHSFLSMSF 698
Query: 364 AYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLTGMDV 420
A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L +DV
Sbjct: 699 AGNHGMEVEDLRRPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLKSKDLDV 754
Query: 421 IFGMNWLEYNRVHINCFSK------------TMHFSSAEE-------------------E 449
I GM+WL ++ I+C ++ T+H S+E
Sbjct: 755 ILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESLRSRLNQITLEEIPIVREYP 814
Query: 450 EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPN 509
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K ++RP+
Sbjct: 815 DVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPS 874
Query: 510 VSPW 513
SPW
Sbjct: 875 SSPW 878
Score = 147 bits (371), Expect = 3e-33
Identities = 65/112 (58%), Positives = 89/112 (79%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+EALYG++C
Sbjct: 1515 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKC 1574
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1575 RTPLLWDQTGERQVFGTDILREAEEKVKVIQERLRVAQSRHKSYADNRRRDL 1626
>gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531192|ref|NP_919898.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20177640|gb|AAM14695.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1680
Score = 204 bits (519), Expect = 2e-50
Identities = 152/544 (27%), Positives = 248/544 (44%), Gaps = 61/544 (11%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 249 QLQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEK 308
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 309 VSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLT 367
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + + F LV
Sbjct: 368 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLEGLNDELSYPLMTEDYSDFQKLV 425
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M ++ K R + K K + L + P+ +S
Sbjct: 426 DKA-IHQEDK---YNRMEQK--KRRIAHFKAQQGNNQKPRLTLGPQSMPHGGSSSVVRPQ 479
Query: 256 FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDR 315
+ +N+ + + Q+ + VVC+NC + GH + +C +P+ +
Sbjct: 480 HQFFNNNAGNNIRNQAPRPVAASTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRHVK 539
Query: 316 ------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALES 363
+ +V + + + +I GT NS P + D+GATH F+++
Sbjct: 540 VVPAQSNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSF 599
Query: 364 AYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLTGMDV 420
A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L +DV
Sbjct: 600 AGNHGMEVEDLRCPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESKDLDV 655
Query: 421 IFGMNWLEYNRVHINCFSK------------TMHFSSAE-----------EE-------- 449
I GM+WL ++ I+C ++ T+H S+E EE
Sbjct: 656 ILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEFLRSRLNQITLEEIPIVRGYP 715
Query: 450 EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPN 509
+VFPD++P +PP+R++EF DLVPGT P+ PYRM+++ELAE+K+Q++D L K ++RP+
Sbjct: 716 DVFPDDLPGMPPKRDIEFRKDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPS 775
Query: 510 VSPW 513
SPW
Sbjct: 776 SSPW 779
Score = 147 bits (371), Expect = 3e-33
Identities = 65/112 (58%), Positives = 89/112 (79%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+EALYG++C
Sbjct: 1416 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKC 1475
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1476 RTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1527
>emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar-group)]
gi|50921971|ref|XP_471346.1| OSJNBa0017P10.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1752
Score = 204 bits (519), Expect = 2e-50
Identities = 152/548 (27%), Positives = 252/548 (45%), Gaps = 69/548 (12%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 322 QLQNQQNQGNNHAPPQNKLAEFLRVRPPIFSSTTNPVEAGDWLHTIEKKLDLLQCTDQEK 381
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 382 VSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLT 440
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 441 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLEGLNDELSYPLMTGDYHDFQKLV 498
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M +++ + Q + + + + RL +P + S+ +V
Sbjct: 499 DKA-IRQEDK---YNRMEQKKRRIAQFKVRQ----GNNQRPRLTLGPQPMPQGGSSSVVH 550
Query: 256 ----FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQP 311
F G+ N+ + + Q+ + + VVC+NC + GH + +C +P
Sbjct: 551 PQRQFFNNNAGN--NIRNQAPRPVAAPTQQQPVKREQGSKPVVCFNCGDPGHYADKCPKP 608
Query: 312 KKDRT------------GGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFI 359
++ + +V + + + +I GT NS P + D+GATH F+
Sbjct: 609 RRVKVVPAQSNSTVPAPKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFL 668
Query: 360 ALESAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLT 416
++ A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L
Sbjct: 669 SMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESK 724
Query: 417 GMDVIFGMNWLEYNRVHINCFSK------------TMHFSSAEE---------------- 448
+DVI GM+WL ++ I+C ++ T+H S+E
Sbjct: 725 DLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESLRSRLNQITLEEIPVV 784
Query: 449 ---EEVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKF 505
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K +
Sbjct: 785 REYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGY 844
Query: 506 VRPNVSPW 513
+RP+ SPW
Sbjct: 845 IRPSSSPW 852
Score = 147 bits (371), Expect = 3e-33
Identities = 65/112 (58%), Positives = 89/112 (79%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+EALYG++C
Sbjct: 1488 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKC 1547
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1548 RTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1599
>gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531782|ref|NP_920193.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657010|gb|AAL78097.1| Putative polyprotein [Oryza
sativa]
Length = 1473
Score = 204 bits (518), Expect = 2e-50
Identities = 153/548 (27%), Positives = 251/548 (44%), Gaps = 69/548 (12%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC+ +K
Sbjct: 42 QFQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTNQEK 101
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 102 VSFASHQLHGPASEWW-DHFRLNRITAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLT 160
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F LV
Sbjct: 161 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYPDFQKLV 218
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M +++ + Q + + + K RL +P + S+ +V
Sbjct: 219 DKA-IRQEDK---YNRMEQKKRRIAQFKTQQ----GNNQKPRLTLGPQPMPQGGSSSVVR 270
Query: 256 ----FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQP 311
F G+ N+ + + Q+ + VVC+NC + GH + +C +P
Sbjct: 271 PQRQFFNNNAGN--NIRNQAPRPVAAPAQQQPAKREQGSKPVVCFNCGDPGHYADKCPKP 328
Query: 312 KKDR------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFI 359
++ + + +V + + + +I GT NS P + D+GATH F+
Sbjct: 329 RRVKVVPVQNNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFL 388
Query: 360 ALESAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLT 416
++ A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L
Sbjct: 389 SMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQ----RSPSVRIEIKGVPFLANLILLESK 444
Query: 417 GMDVIFGMNWLEYNRVHINCFSK------------TMHFSSAEE---------------- 448
+DVI GM+WL ++ I+C ++ T+H S+E
Sbjct: 445 DLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESLRSRLNQVTLEEIPIV 504
Query: 449 ---EEVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKF 505
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K +
Sbjct: 505 REYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGY 564
Query: 506 VRPNVSPW 513
+RP+ SPW
Sbjct: 565 IRPSSSPW 572
Score = 147 bits (371), Expect = 3e-33
Identities = 65/112 (58%), Positives = 89/112 (79%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+EALYG++C
Sbjct: 1209 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKC 1268
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1269 RTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1320
>emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa (japonica cultivar-group)]
gi|50928613|ref|XP_473834.1| OSJNBa0060N03.17 [Oryza
sativa (japonica cultivar-group)]
Length = 1634
Score = 204 bits (518), Expect = 2e-50
Identities = 146/526 (27%), Positives = 240/526 (44%), Gaps = 59/526 (11%)
Query: 34 LETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKKVRFGTHMLAEEADDWWVS 93
L FLR PP F +P A WL +E+ +QC++ +KV F +H L A +WW
Sbjct: 297 LAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDH 356
Query: 94 LLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK*GDISVVEYAAKFVELAK 153
E ++ W F F + V K+ EF L G SV EY +F LA+
Sbjct: 357 FRLNRTTAEPII-WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLAR 415
Query: 154 FYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLVSRCRICEEDTKAHYKVMS 213
+ P E + KF GL + + F LV + I +ED Y M
Sbjct: 416 YAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYPDFQKLVDKA-IRQEDK---YNRME 469
Query: 214 ERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVCFKCGEKGHKSNVCTKDEK 273
++ K R ++ K K L + P +S + +N+ + +
Sbjct: 470 QK--KRRIAQFKTQQGNNQKPHLTLGPQPMPQGGSSSVVRPQRQFFNNNAGNNIRNQGPR 527
Query: 274 KCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDR------------TGGKVF 321
Q+ + + VVC+NC + GH + +C +P++ + + +V
Sbjct: 528 PVAAPAQQQPVKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAVPASKARVN 587
Query: 322 ALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALESAYKLGLIVSDMKGEMVVE 381
+ + + +I GT NS P + D+GATH F+++ G+ V D++ ++V
Sbjct: 588 HVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVS 647
Query: 382 TPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLTGMDVIFGMNWLEYNRVHINCFS 438
TP+ +++ R P+ + G F+ +L+ L +DVI GM+WL ++ I+C +
Sbjct: 648 TPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCAN 703
Query: 439 K------------TMHFSSAEE-------------------EEVFPDEIPDVPPEREVEF 467
K T+H S+E +VFPD++P +PP+R++EF
Sbjct: 704 KKVTLTSYDGRVVTVHALSSESLRSRLNQITLEEISIVREYPDVFPDDLPGMPPKRDIEF 763
Query: 468 SIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPNVSPW 513
IDLVPGT P+ PYRM+++ELAE+K+Q++D L K ++RP+ SPW
Sbjct: 764 RIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPW 809
Score = 144 bits (363), Expect = 2e-32
Identities = 64/112 (57%), Positives = 88/112 (78%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MA +EALYG++C
Sbjct: 1446 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMASYEALYGRKC 1505
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1506 RTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1557
>gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|54287530|gb|AAV31274.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1400
Score = 203 bits (517), Expect = 3e-50
Identities = 150/544 (27%), Positives = 246/544 (44%), Gaps = 61/544 (11%)
Query: 18 QAVEQQPQASNGEV--RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQCSEVKK 75
Q QQ Q +N L FLR PP F +P A WL +E+ +QC++ +K
Sbjct: 42 QLQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEK 101
Query: 76 VRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEIEFLELK 135
V F +H L A +WW + +TW F F + V K+ EF L
Sbjct: 102 VSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLT 160
Query: 136 *GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIRIFSDLV 195
G SV EY +F LA++ P E + KF GL + + F L+
Sbjct: 161 QGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLEGLNDELSYPLMTGDYSDFQKLM 218
Query: 196 SRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDASAEIVC 255
+ I +ED Y M ++ K R + K K + L + P +S
Sbjct: 219 DKA-IRQEDK---YNRMEQK--KRRIAHFKAQQGSNQKPRLTLGPQSMPQGGSSSVVRPQ 272
Query: 256 FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHISTQCTQPKKDR 315
+ +N+ + + Q+ + VVC+NC + GH + +C +P++ +
Sbjct: 273 RQFFNNNAGNNIRNQAPRPVAAPTQQQPAKREPGSKPVVCFNCGDPGHYADKCPKPRRVK 332
Query: 316 ------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALES 363
+ +V + + + +I GT NS P + D+GATH F+++
Sbjct: 333 VVPAQSNSTAPASKARVNHVAAAEAQDAPDVILGTFSVNSVPATVLFDSGATHSFLSMSF 392
Query: 364 AYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDLVCLPLTGMDV 420
A G+ V D++ ++V TP+ +++ R P+ + G F+ +L+ L +DV
Sbjct: 393 AGNHGMEVEDLRRPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESKDLDV 448
Query: 421 IFGMNWLEYNRVHINCFSK------------TMHFSSAEE-------------------E 449
I GM+WL ++ I+C ++ T+H S+E
Sbjct: 449 ILGMDWLARHKGVIDCANRKVTLISNDGRVVTVHALSSESLRSRLNQITLEEIPIVREYP 508
Query: 450 EVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED*LDKKFVRPN 509
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D L K ++RP+
Sbjct: 509 DVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPS 568
Query: 510 VSPW 513
SPW
Sbjct: 569 SSPW 572
Score = 148 bits (373), Expect = 2e-33
Identities = 66/112 (58%), Positives = 89/112 (78%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +SI MAP+EALYG++C
Sbjct: 1209 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASIQMAPYEALYGRKC 1268
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1269 RTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1320
>gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531994|ref|NP_920299.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1715
Score = 203 bits (516), Expect = 4e-50
Identities = 151/554 (27%), Positives = 251/554 (45%), Gaps = 70/554 (12%)
Query: 13 LEAIAQAVEQQPQASNGEV---RMLETFLRNHPPAFKGMYDPDGAQSWLKEVERIFRAMQ 69
+ + Q + Q N V L FLR PP F +P A WL +E+ +Q
Sbjct: 278 MNMMMQQFQNQQNQGNNHVPPQNKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQ 337
Query: 70 CSEVKKVRFGTHMLAEEADDWWVSLLPVLEQDEAVVTWAVFRREFLNRYFLEDV*GRKEI 129
C++ +KV F +H L A +WW + +TW F F + V K+
Sbjct: 338 CTDQEKVSFASHQLHGPASEWW-DHFRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKK 396
Query: 130 EFLELK*GDISVVEYAAKFVELAKFYPHYTAETAEFSKCIKFENGLRANIKRAIGYQQIR 189
EF L G SV EY +F LA++ P E + KF GL + +
Sbjct: 397 EFRSLSQGSRSVTEYLHEFNRLARYAPEDVRNDEERQE--KFLGGLNDELSYPLMVGDYP 454
Query: 190 IFSDLVSRCRICEEDTKAHYKVMSERRGKGRQSRPKPYSAPADKGKQRLNDERRPNRRDA 249
F LV + I +ED Y M +++ + Q + + + K RL +P +
Sbjct: 455 DFQKLVDKA-IRQEDK---YNRMEQKKRRIAQFKTQQ----GNNQKPRLTLGPQPMPQGG 506
Query: 250 SAEIVC----FKCGEKGHKSNVCTKDEKKCFRCGQKGHLLADCKRGDVVCYNCNEEGHIS 305
S+ +V F G+ N+ + Q+ + VVC+NC + GH +
Sbjct: 507 SSSVVRPQRQFFNNNAGN--NIRNLAPRPVAVPAQQQPAKREQGNKPVVCFNCGDPGHYA 564
Query: 306 TQCTQPKKDR------------TGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTG 353
+C +P++ + + +V + + + +I G NS P + D+G
Sbjct: 565 DKCPKPRRVKVVPAQNNSAVPTSKARVNHVAAAEAQDAPDVILGMFLVNSVPATVLFDSG 624
Query: 354 ATHCFIALESAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPT---SMFGRDFVVDL 410
ATH F+++ A G+ V D++ ++V TP+ +++ R P+ + G F+ +L
Sbjct: 625 ATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANL 680
Query: 411 VCLPLTGMDVIFGMNWLEYNRVHINCFSK------------TMHFSSAEE---------- 448
+ L +DVI GM+WL ++ I+C ++ T+H S+E
Sbjct: 681 ILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESLRSRLNQITL 740
Query: 449 ---------EEVFPDEIPDVPPEREVEFSIDLVPGTKPMSMAPYRMSSSELAELKKQLED 499
+VFPD++P +PP+R++EF IDLVPGT P+ PYRM+++ELAE+K+Q++D
Sbjct: 741 EEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDD 800
Query: 500 *LDKKFVRPNVSPW 513
L K ++RP+ SPW
Sbjct: 801 LLQKGYIRPSSSPW 814
Score = 147 bits (371), Expect = 3e-33
Identities = 65/112 (58%), Positives = 89/112 (79%)
Query: 1342 RTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPLIEFTYNNGYHSSIGMAPFEALYGQRC 1401
+TDGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNN Y +S+ MAP+EALYG++C
Sbjct: 1451 QTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKC 1510
Query: 1402 RTPLCWFESGERVVLGPEIVQQTTEKVKMIQEKMKVSHSRQKSYHDKRRKDL 1453
RTPL W ++GER V G +I+++ EKVK+IQE+++V+ SR KSY D RR+DL
Sbjct: 1511 RTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1562
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.351 0.154 0.543
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,155,810,596
Number of Sequences: 2540612
Number of extensions: 82718129
Number of successful extensions: 355008
Number of sequences better than 10.0: 4728
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 3617
Number of HSP's that attempted gapping in prelim test: 330715
Number of HSP's gapped (non-prelim): 19626
length of query: 1454
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1313
effective length of database: 505,134,102
effective search space: 663241075926
effective search space used: 663241075926
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 82 (36.2 bits)
Medicago: description of AC130807.5